View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12081_high_13 (Length: 266)

Name: NF12081_high_13
Description: NF12081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12081_high_13
NF12081_high_13
[»] chr6 (2 HSPs)
chr6 (1-249)||(33585141-33585389)
chr6 (159-223)||(21112687-21112751)
[»] chr7 (7 HSPs)
chr7 (66-118)||(7679104-7679156)
chr7 (159-223)||(15042684-15042748)
chr7 (159-223)||(22293434-22293498)
chr7 (151-223)||(40819346-40819418)
chr7 (158-223)||(22204745-22204810)
chr7 (158-223)||(22229929-22229994)
chr7 (159-223)||(26279368-26279432)
[»] chr2 (2 HSPs)
chr2 (159-217)||(14811873-14811931)
chr2 (160-217)||(29081653-29081710)
[»] chr5 (2 HSPs)
chr5 (166-223)||(6666287-6666344)
chr5 (151-223)||(8871835-8871907)
[»] chr4 (1 HSPs)
chr4 (142-223)||(26261772-26261853)
[»] chr8 (3 HSPs)
chr8 (159-223)||(29055156-29055220)
chr8 (149-223)||(3046185-3046259)
chr8 (159-223)||(10861230-10861294)
[»] chr3 (2 HSPs)
chr3 (159-223)||(29360332-29360396)
chr3 (166-223)||(39580484-39580541)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 33585389 - 33585141
Alignment:
Q  1 ttaataatttgaagaggcataccgctgatatatactggaatcaaataaattatgactgatgaagacttaacaggttttattgctttgaaagataaaaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  33585389 ttaataatttgaagaggcataccgctgatatatactggaatcaaataaattatgattgatgaagacttaacaggttttattgctttgaaagacaaaaatt 33585290  T
Q  101 gtaaagtagataaacatgacaacctatgaagctaggataccggatacaatacgatattgatacgagaaattttttaaaatttccgatacgatacaacatt 200  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||    
T  33585289 gtaaagtagataaacattacaacctatgaagttaggataccggatacaatacgatattgatacgagaaatttttcaaaacttccgatacgatacgacatt 33585190  T
Q  201 gatacgttattaaaaaataaaatcatcatcagtatcatttataactata 249  Q
    || ||||||||||||||| ||||||||||||||||||||||||||||||    
T  33585189 gaaacgttattaaaaaattaaatcatcatcagtatcatttataactata 33585141  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 21112751 - 21112687
Alignment:
Q  159 gatacgagaaattttttaaaatttccgatacgatacaacattgatacgttattaaaaaataaaat 223  Q
    |||||| |||| |||| |||||||||||||||||||  | | |||||||||||||||||| ||||    
T  21112751 gatacgggaaaattttcaaaatttccgatacgatacggcctcgatacgttattaaaaaattaaat 21112687  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 7679104 - 7679156
Alignment:
Q  66 cttaacaggttttattgctttgaaagataaaaattgtaaagtagataaacatg 118  Q
    ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||    
T  7679104 cttaacaggttttattgctttaaaagacaaaaattttaaagtagataaacatg 7679156  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 15042684 - 15042748
Alignment:
Q  159 gatacgagaaattttttaaaatttccgatacgatacaacattgatacgttattaaaaaataaaat 223  Q
    |||||||||||||||| |||| | |||||||||||| || | ||||||||||| |||||| ||||    
T  15042684 gatacgagaaatttttcaaaactcccgatacgatacgacctcgatacgttattcaaaaattaaat 15042748  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 22293498 - 22293434
Alignment:
Q  159 gatacgagaaattttttaaaatttccgatacgatacaacattgatacgttattaaaaaataaaat 223  Q
    |||| ||||||||||| |||||||||||||| |||| |  | |||||||||||||||||| ||||    
T  22293498 gatatgagaaatttttcaaaatttccgatacaatacgaactcgatacgttattaaaaaattaaat 22293434  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 40819346 - 40819418
Alignment:
Q  151 acgatattgatacgagaaattttttaaaatttccgatacgatacaacattgatacgttattaaaaaataaaat 223  Q
    ||||||| |||||| |||| |||| |||||| ||||||| ||||| | | |||||||||||||||||| ||||    
T  40819346 acgatatcgatacgggaaaattttcaaaattcccgatacaatacagcctcgatacgttattaaaaaattaaat 40819418  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 22204745 - 22204810
Alignment:
Q  158 tgatacgagaaattttttaaaatttccgatacgatacaacattgatacgttattaaaaaataaaat 223  Q
    ||||||| ||||||||| |||||||| ||||||||||    | |||||||||||||||||| ||||    
T  22204745 tgatacgtgaaatttttcaaaatttctgatacgatacggtctcgatacgttattaaaaaattaaat 22204810  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 22229994 - 22229929
Alignment:
Q  158 tgatacgagaaattttttaaaatttccgatacgatacaacattgatacgttattaaaaaataaaat 223  Q
    ||||||| ||||||||| |||||||| ||||||||||    | |||||||||||||||||| ||||    
T  22229994 tgatacgtgaaatttttcaaaatttctgatacgatacggtctcgatacgttattaaaaaattaaat 22229929  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 26279368 - 26279432
Alignment:
Q  159 gatacgagaaattttttaaaatttccgatacgatacaacattgatacgttattaaaaaataaaat 223  Q
    |||||| ||| ||||| ||||||||||||||||||   | | |||||||||||||||||| ||||    
T  26279368 gatacgggaattttttcaaaatttccgatacgatagggcctcgatacgttattaaaaaattaaat 26279432  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 14811931 - 14811873
Alignment:
Q  159 gatacgagaaattttttaaaatttccgatacgatacaacattgatacgttattaaaaaa 217  Q
    |||||| |||| |||| ||||||||||||||||||| || | |||||||||||||||||    
T  14811931 gatacgggaaaattttcaaaatttccgatacgatacgacctcgatacgttattaaaaaa 14811873  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 29081710 - 29081653
Alignment:
Q  160 atacgagaaattttttaaaatttccgatacgatacaacattgatacgttattaaaaaa 217  Q
    ||||||||||||||||||||||| |||||||| ||    | |||||||||||||||||    
T  29081710 atacgagaaattttttaaaattttcgatacgacacgtactcgatacgttattaaaaaa 29081653  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 6666344 - 6666287
Alignment:
Q  166 gaaattttttaaaatttccgatacgatacaacattgatacgttattaaaaaataaaat 223  Q
    |||||||||||||||| ||||||||||||  | | |||||||||||||||||| ||||    
T  6666344 gaaattttttaaaattcccgatacgatacggcctcgatacgttattaaaaaattaaat 6666287  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 8871907 - 8871835
Alignment:
Q  151 acgatattgatacgagaaattttttaaaatttccgatacgatacaacattgatacgttattaaaaaataaaat 223  Q
    |||||| ||||||| |||| |||| |||||| ||||||||||||  | | |||||||||||||||||| ||||    
T  8871907 acgatactgatacgggaaaattttcaaaattcccgatacgatacggcctcgatacgttattaaaaaattaaat 8871835  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 26261853 - 26261772
Alignment:
Q  142 ggatacaatacgatattgatacgagaaattttttaaaatttccgatacgatacaacattgatacgttattaaaaaataaaat 223  Q
    |||||||||| |||  ||||||| ||||||||| |||||| |||||||||||   | | |||||||||||||||||| ||||    
T  26261853 ggatacaatatgatgctgatacgggaaatttttcaaaattcccgatacgatatggcctcgatacgttattaaaaaattaaat 26261772  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 29055220 - 29055156
Alignment:
Q  159 gatacgagaaattttttaaaatttccgatacgatacaacattgatacgttattaaaaaataaaat 223  Q
    |||||| |||| |||| |||||| ||||||||||||  | |||||||||||||||||||| ||||    
T  29055220 gatacgggaaaattttcaaaattcccgatacgatacggccttgatacgttattaaaaaattaaat 29055156  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 223
Target Start/End: Original strand, 3046185 - 3046259
Alignment:
Q  149 atacgatattgatacgagaaattttttaaaatttccgatacgatacaacattgatacgttattaaaaaataaaat 223  Q
    ||||||||| |||||| | || |||| ||||||||||||||||||   | | |||||||||||||||||| ||||    
T  3046185 atacgatatcgatacgggcaaattttcaaaatttccgatacgatatggcctcgatacgttattaaaaaattaaat 3046259  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 10861230 - 10861294
Alignment:
Q  159 gatacgagaaattttttaaaatttccgatacgatacaacattgatacgttattaaaaaataaaat 223  Q
    |||||| |||| |||| ||||||||| |||||||||  | | |||||||||||||||||| ||||    
T  10861230 gatacgggaaaattttcaaaatttccaatacgatacggcctcgatacgttattaaaaaattaaat 10861294  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 29360396 - 29360332
Alignment:
Q  159 gatacgagaaattttttaaaatttccgatacgatacaacattgatacgttattaaaaaataaaat 223  Q
    |||||| ||||||||| |||||| ||||||||||||    |||||||||||||||||||| ||||    
T  29360396 gatacgggaaatttttcaaaattcccgatacgatactgtcttgatacgttattaaaaaattaaat 29360332  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 39580541 - 39580484
Alignment:
Q  166 gaaattttttaaaatttccgatacgatacaacattgatacgttattaaaaaataaaat 223  Q
    |||| |||| |||||||||||||||||||  | | |||||||||||||||||| ||||    
T  39580541 gaaaattttcaaaatttccgatacgatacggcctcgatacgttattaaaaaattaaat 39580484  T

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