View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12081_high_16 (Length: 245)
Name: NF12081_high_16
Description: NF12081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12081_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 51223084 - 51223296
Alignment:
| Q |
17 |
cagttacttgtagaagaagttatcagtgagtgaagcttgtgtagattcaggaacacattagataggtggacattagtgtgaaaatatgcatttaaacgcg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51223084 |
cagttacttgtagaagaagttatcagtgagtgaagcttgtgtagattcaggaacacattagataggtggacattagtgtgaaaatatgcatttaaacgcg |
51223183 |
T |
|
| Q |
117 |
acgataagtgttcaacattgttcagagcaaagtttatgtaagtggtggtttcaaatgtgaaggcaaggaagaccatgaaattcggctttaaaagttgctt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
51223184 |
acgataagtgttcaacattgttcagagcaaagtttatgtaagtggtggtttcaaatgtgaaggcaaggaagaccatgaaattcagctttaaaagttgctt |
51223283 |
T |
|
| Q |
217 |
caattgttaaatt |
229 |
Q |
| |
|
||||||||||||| |
|
|
| T |
51223284 |
caattgttaaatt |
51223296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University