View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12081_high_7 (Length: 328)
Name: NF12081_high_7
Description: NF12081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12081_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 6 - 318
Target Start/End: Complemental strand, 48074538 - 48074229
Alignment:
| Q |
6 |
attatatactgataaggtcaggcatgttgaggccattggagaagcgtccagtggcacggtgagttggataatcaatgccataagggtaagaatcagcacg |
105 |
Q |
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| T |
48074538 |
attatatactgataaggtcaggcatgttgaggccattggagaagcgtccagtggcacggtgagttggataatcaatgccataagggtaagaatcagcacg |
48074439 |
T |
|
| Q |
106 |
agcagtggttgctaagtagttattgttgccattgtcaacaagtgaatcaccnnnnnnnnnnnntgctcgagcctcaacttgtggaacaacagtgttgaaa |
205 |
Q |
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| T |
48074438 |
agcagtggttgctaagtagttattgttgccattgtcaacaagtgaatcaccaaaaacaaaaaatgctcgagcctcaacttgtggaacaacagtgttgaaa |
48074339 |
T |
|
| Q |
206 |
tttaccaacaagcatattaacatacaagaaacaaaaactactctttggttgttttggtccatggatattgga-tagtgcctctaaacaaattaatggaga |
304 |
Q |
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| T |
48074338 |
tttaccaacaagcatattaacatacaagaaacaaaaactactctttggttgttttggtccatggatattggattagtgcctctaaaca----aatggaga |
48074243 |
T |
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| Q |
305 |
gagactaccctttg |
318 |
Q |
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| T |
48074242 |
gagactaccctttg |
48074229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 48091587 - 48091444
Alignment:
| Q |
13 |
actgataaggtcaggcatgttgaggccattggagaagcgtccagtggcacggtgagttggataatcaatgccataagggtaagaatcagcacgagcagtg |
112 |
Q |
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| T |
48091587 |
actgatgaagtcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccataaggaggagcatcagctcgagcagta |
48091488 |
T |
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| Q |
113 |
gttgctaagtagttattgttgccattgtcaacaagtgaatcacc |
156 |
Q |
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| T |
48091487 |
gttgctaagtaattattgttaccattatcaacaagagaatcacc |
48091444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 156
Target Start/End: Complemental strand, 48100437 - 48100352
Alignment:
| Q |
71 |
ggataatcaatgccataagggtaagaatcagcacgagcagtggttgctaagtagttattgttgccattgtcaacaagtgaatcacc |
156 |
Q |
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| T |
48100437 |
ggataatcaattccataaggaggagaatcagccctagcagtagttaccaaataattgttgttgccactgtcaacaagtgaatcacc |
48100352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 1807340 - 1807295
Alignment:
| Q |
66 |
gagttggataatcaatgccataagggtaagaatcagcacgagcagt |
111 |
Q |
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| T |
1807340 |
gagttggataatcaattccataaggaggagaatcagcacgagcagt |
1807295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 6343051 - 6343187
Alignment:
| Q |
20 |
aggtcaggcatgttgaggccattggagaagcgtccagtggcacggtgagttggataatcaatgccataagggtaagaatcagcacgagcagtggttgcta |
119 |
Q |
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| T |
6343051 |
aggtcaggcatgttgaggccattggagaaacgaccagaagctctatgagtttgagaatcaattccataaggatatgaatcagcacgagcagtagtggcta |
6343150 |
T |
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| Q |
120 |
agtagttattgttgccattgtcaacaagtgaatcacc |
156 |
Q |
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| T |
6343151 |
ggaagttattatttccattatccacaagagaatcacc |
6343187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 29769698 - 29769838
Alignment:
| Q |
16 |
gataaggtcaggcatgttgaggccattggagaagcgtccagtggcacggtgagttggataatcaatgccataagggtaagaatcagcacgagcagtggtt |
115 |
Q |
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| T |
29769698 |
gataaggtcagggaggttgacaccattggagaagcgaccggtgggacgatgaccgggataatcgatgccataaggaggagagtcggcacgtgccgtggtt |
29769797 |
T |
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| Q |
116 |
gctaagtagttattgttgccattgtcaacaagtgaatcacc |
156 |
Q |
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| T |
29769798 |
agcaaataattattgttgccactgtcaacaagtgagtcacc |
29769838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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