View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12081_high_9 (Length: 315)
Name: NF12081_high_9
Description: NF12081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12081_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 2685186 - 2685487
Alignment:
| Q |
1 |
atacgaaatattaattaattaaagtaccaaaa-tgaaaacgttaaataagttaagagaccaattatctaatttaacaaataaatgttataataagaaaaa |
99 |
Q |
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| T |
2685186 |
atacgaaatattaattaattaaagtaccaaaaatgaaaacgttaaataagttaagagactaattatctaatttaacaaataaattttataataagaaaaa |
2685285 |
T |
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| Q |
100 |
acaaagactagatacattataatattttattaaaatttagtccacattattagcgactggtttgtgcaacatgattaaaacagtacttaattgaagtaga |
199 |
Q |
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| T |
2685286 |
acaaagactagatatattataatattttattaaaatttagtccacattattagcgactggtttgtgcaacatgattaaaaaagtacttaattgaagtaga |
2685385 |
T |
|
| Q |
200 |
ttttattttgggtgcaggacttcatggctggtaaactccctgcttttcagggtcaattgccaacactcagagattgggaaaatcatctctcaataatata |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2685386 |
ttttattttgggtgcaggacttcatggctggtaaactccctgcttttcagggtcaattgccaacactcagagattgggaaaatcatctctcaacaatata |
2685485 |
T |
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| Q |
300 |
tc |
301 |
Q |
| |
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|| |
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| T |
2685486 |
tc |
2685487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 2693088 - 2693174
Alignment:
| Q |
212 |
tgcaggacttcatggctggtaaactccctgcttttcagggtcaattgccaacactcagagattgggaaaatcatctctcaataatat |
298 |
Q |
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|||||||||||||||| |||||||||||||| ||| |||||| |||||||| |||| |||||||| ||||| ||| ||| ||||| |
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| T |
2693088 |
tgcaggacttcatggccggtaaactccctgccattcgaggtcaagtgccaacaatcagtgattgggagaatcacctcacaacaatat |
2693174 |
T |
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