View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12081_low_1 (Length: 995)

Name: NF12081_low_1
Description: NF12081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12081_low_1
NF12081_low_1
[»] chr1 (13 HSPs)
chr1 (508-985)||(51221726-51222203)
chr1 (1-447)||(51222404-51222836)
chr1 (662-815)||(51382145-51382298)
chr1 (663-811)||(51857801-51857949)
chr1 (1-151)||(51220275-51220424)
chr1 (662-829)||(51781990-51782157)
chr1 (212-267)||(51220073-51220128)
chr1 (684-834)||(51828969-51829120)
chr1 (662-769)||(51763681-51763786)
chr1 (663-811)||(51831604-51831752)
chr1 (714-761)||(25869453-25869500)
chr1 (721-804)||(45693600-45693683)
chr1 (326-379)||(51219999-51220052)
[»] chr6 (2 HSPs)
chr6 (707-815)||(4183711-4183819)
chr6 (714-815)||(4744550-4744650)


Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 508 - 985
Target Start/End: Complemental strand, 51222203 - 51221726
Alignment:
Q  508 ggttagtgtgaaccctagcctccatcaggttaactagaatcctaactaacatcagtcacccacagagaaatcttaacaaccgacatgaacttgcagctat 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  51222203 ggttagtgtgaaccctagcctccatcaggttaactagaatcctaactaacatcagtcacccacagaaaaatcctaacaaccgacatgaacttgcagctat 51222104  T
Q  608 tgacatcactctcttcctcctccgaaactcccaccaattcacttcaccctccttctcttccgttccatctcgttgaagaaatcctgtgccggctgcccat 707  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  51222103 tgatatcactctcttcctcctccgaaactcccaccaattcacttcaccctccttctcttccgttccatctcgttgaagaaatcctgtgccggctgcccgt 51222004  T
Q  708 gaaacacctcattcaactccgctgcatctgcaagtcatggaattctcttatctctcttgatttcaattttgccaagaagcaacttcgcttgtcaaccttc 807  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  51222003 gaaacacctcattcaactccgctgcatctgcaagtcatggaattctcttatctctcatgatttaaattttgccaagaagcaacttcgcttgtcaaccttc 51221904  T
Q  808 aaccacgatttccaacacctcaatataagctgtatgaactcctcaagtgagttacttcaatttgatttctcaatctcctctattttcacctctgcctcca 907  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  51221903 aaccacgatttccaacacctcaatataagctgtacgaactcctcaagtgagttacttcaatttgatttctcaatctcctctattttcacctctgcatcca 51221804  T
Q  908 caactgtccaatctcctccatttacttggcgtcgagactatgatctcgaggtttccacttgtgatggcatcctctgtg 985  Q
    |||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  51221803 caactaaccaatctcctccatttacttgtcgtcgagactatgatctcgaggtttccacttgtgatggcatcctctgtg 51221726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 51222836 - 51222404
Alignment:
Q  1 cacaccaaaattcttgtgaatcagattgaagcttctaacccaacttgaggacggacgcttcattcatgatgtctaaacttctaagatcaactcccccaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  51222836 cacaccaaaattcttgtgaatcagattgaagcttctaacccaacttgaagacggacgcttcattcatgatgtctaaacttctaagatcaagtcccccaaa 51222737  T
Q  101 tgttataagcctagtcaccatctcccaaacctaaaacgtggtacttcctttccgtaatggtctcccactcccacagatgaatttcctttacattctttgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||| |||||||||||||    
T  51222736 tgttataagcctagtcaccatctcccaaacctaaaacgtggtacttcctttccgtaatggtctc------ccacagatgaatttccattacattctttgg 51222643  T
Q  201 atatataggagttacatattggtaatcatttctccttggcattctcccagccataggcactccaagatatcttccaagaacatgagnnnnnnnaaatcca 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||       |||||||    
T  51222642 atatataggagttacatattggtaatcatttctccttggcattctcccagtcataggcactccaagatatcttccaagaacatgagtttctttaaatcca 51222543  T
Q  301 taaatttgcgtcaagccgtcaacctatcacgttttcctctatcaatattcttagagaaaagaatgttcgttttttcttgactgacttcatgtcccgaaac 400  Q
    ||||||||        | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  51222542 taaatttg--------catcaacctatcacgttttcctctatcaatattcttagagaaaagaatgttcgttttttcttgactgacttcatgtcccgaaat 51222451  T
Q  401 tctacacagtttctaaagaatgttgataacacaattcatttgagctt 447  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  51222450 tctacaaagtttctaaagaatgttgataacacaattcatttgagctt 51222404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 662 - 815
Target Start/End: Complemental strand, 51382298 - 51382145
Alignment:
Q  662 ctcttccgttccatctcgttgaagaaatcctgtgccggctgcccatgaaacacctcattcaactccgctgcatctgcaagtcatggaattctcttatctc 761  Q
    ||||||||||| |||| || | |||||||||||||| ||| ||| ||||||||||| |||||||||| ||| |||||||||||||||||| |||||||||    
T  51382298 ctcttccgttcgatctggtggcagaaatcctgtgcctgctccccgtgaaacacctccttcaactccgttgcgtctgcaagtcatggaattatcttatctc 51382199  T
Q  762 tcttgatttcaattttgccaagaagcaacttcgcttgtcaaccttcaaccacga 815  Q
    || ||||| |||||| ||||||||||||||||| |||||||||| |||||||||    
T  51382198 tcatgattccaatttcgccaagaagcaacttcgtttgtcaacctccaaccacga 51382145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 663 - 811
Target Start/End: Original strand, 51857801 - 51857949
Alignment:
Q  663 tcttccgttccatctcgttgaagaaatcctgtgccggctgcccatgaaacacctcattcaactccgctgcatctgcaagtcatggaattctcttatctct 762  Q
    |||| ||||| |||||||   |||||| ||||||| ||| ||| ||||| | ||| |||||||||| |||||||||||||||||||||||||||||||||    
T  51857801 tctttcgttcgatctcgtgacagaaattctgtgccagctccccgtgaaaaatctccttcaactccgttgcatctgcaagtcatggaattctcttatctct 51857900  T
Q  763 cttgatttcaattttgccaagaagcaacttcgcttgtcaaccttcaacc 811  Q
    | ||||| | | ||  | | |||||| |||||||||||||||| |||||    
T  51857901 catgattccgaattcactatgaagcaccttcgcttgtcaacctccaacc 51857949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 51220424 - 51220275
Alignment:
Q  1 cacaccaaaattcttgtgaatcagattgaagctt-ctaacccaacttgaggacggacgcttcattcatgatgtctaaacttctaagatcaactcccccaa 99  Q
    |||| ||||| ||||||||||||||||||||||| ||| || ||||||| || | || ||||||||||||| ||||| ||| | ||| ||| ||||||||    
T  51220424 cacatcaaaaatcttgtgaatcagattgaagcttcctacccaaacttgaagatgtacacttcattcatgatttctaatcttttcagaccaagtcccccaa 51220325  T
Q  100 atgttataagcctagtcaccatctcccaaacctaaaacgtggtacttccttt 151  Q
    ||||| |  |||||||||||||||||| |||||| ||| |||||||||||||    
T  51220324 atgtt-ttggcctagtcaccatctccc-aacctacaacatggtacttccttt 51220275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 662 - 829
Target Start/End: Original strand, 51781990 - 51782157
Alignment:
Q  662 ctcttccgttccatctcgttgaagaaatcctgtgccggctgcccatgaaacacctcattcaactccgctgcatctgcaagtcatggaattctcttatctc 761  Q
    ||||||||||| |||| |||| |||||||||||| | ||| ||| ||||||| |||||| |||||||| |  |||| |||||||||||||||||||||||    
T  51781990 ctcttccgttcgatctggttgcagaaatcctgtgtctgctccccgtgaaacatctcattaaactccgccgtgtctgtaagtcatggaattctcttatctc 51782089  T
Q  762 tcttgatttcaattttgccaagaagcaacttcgcttgtcaaccttcaaccacgatttccaacacctca 829  Q
     | |||||  || || || || || ||  |||||||||||||||  |||||||||  ||| |||||||    
T  51782090 ccatgattctaaattcgctaaaaaacactttcgcttgtcaacctctaaccacgatcgccaccacctca 51782157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 212 - 267
Target Start/End: Complemental strand, 51220128 - 51220073
Alignment:
Q  212 ttacatattggtaatcatttctccttggcattctcccagccataggcactccaaga 267  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  51220128 ttacatattggtaatcatttctccttggcattctcccagtcataggcattccaaga 51220073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 684 - 834
Target Start/End: Original strand, 51828969 - 51829120
Alignment:
Q  684 agaaatcctgtgccggctgcccatgaaacacctcattcaactccgctgcatctgc-aagtcatggaattctcttatctctcttgatttcaattttgccaa 782  Q
    |||||| ||||||| ||| ||| |||||||||||||||||||||| ||  ||||| ||||||||||||||||||||| ||   |||| |||||||||||     
T  51828969 agaaatactgtgcctgctccccgtgaaacacctcattcaactccgttgtgtctgcaaagtcatggaattctcttatccctgaggattccaattttgccag 51829068  T
Q  783 gaagcaacttcgcttgtcaaccttcaaccacgatttccaacacctcaatata 834  Q
    ||| || |||| ||| ||||||| | ||||| |   ||| ||||||||||||    
T  51829069 gaaacaccttcacttctcaacctacgaccacaaccgccaccacctcaatata 51829120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 662 - 769
Target Start/End: Complemental strand, 51763786 - 51763681
Alignment:
Q  662 ctcttccgttccatctcgttgaagaaatcctgtgccggctgcccatgaaacacctcattcaactccgctgcatctgcaagtcatggaattctcttatctc 761  Q
    ||||||||||  |||||||   |||||| |||||||||||  || ||||||| ||| |||||||| | ||| |||||||||||||||||||||||||||     
T  51763786 ctcttccgtttgatctcgtgacagaaattctgtgccggct--ccgtgaaacatctccttcaactctgttgcgtctgcaagtcatggaattctcttatctg 51763689  T
Q  762 tcttgatt 769  Q
    || |||||    
T  51763688 tcatgatt 51763681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 663 - 811
Target Start/End: Original strand, 51831604 - 51831752
Alignment:
Q  663 tcttccgttccatctcgttgaagaaatcctgtgccggctgcccatgaaacacctcattcaactccgctgcatctgcaagtcatggaattctcttatctct 762  Q
    |||||||||  ||||||| | || ||||||||||||||| ||  |||||   ||| |||||||||| ||  |||||||||||||||| ||||||||||||    
T  51831604 tcttccgtttgatctcgtggtagtaatcctgtgccggctcccagtgaaatttctccttcaactccgttgtgtctgcaagtcatggaactctcttatctct 51831703  T
Q  763 cttgatttcaattttgccaagaagcaacttcgcttgtcaaccttcaacc 811  Q
       |||| ||||||  ||| |||||| ||||  |||||||||| |||||    
T  51831704 gaagattccaatttcaccaggaagcaccttcagttgtcaacctccaacc 51831752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 714 - 761
Target Start/End: Complemental strand, 25869500 - 25869453
Alignment:
Q  714 cctcattcaactccgctgcatctgcaagtcatggaattctcttatctc 761  Q
    |||||| |||||||||||||| |||||||||||||||||||| |||||    
T  25869500 cctcatgcaactccgctgcatttgcaagtcatggaattctctaatctc 25869453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 721 - 804
Target Start/End: Complemental strand, 45693683 - 45693600
Alignment:
Q  721 caactccgctgcatctgcaagtcatggaattctcttatctctcttgatttcaattttgccaagaagcaacttcgcttgtcaacc 804  Q
    |||||||||||||| |||||||| ||||||||||| |||||  |||||  ||| ||||| ||||| || |||||| ||||||||    
T  45693683 caactccgctgcatatgcaagtcgtggaattctctaatctcaattgatcccaaatttgctaagaatcaccttcgcatgtcaacc 45693600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 326 - 379
Target Start/End: Complemental strand, 51220052 - 51219999
Alignment:
Q  326 atcacgttttcctctatcaatattcttagagaaaagaatgttcgttttttcttg 379  Q
    |||||||||||||||||||| ||||||||| || | |||| | |||||||||||    
T  51220052 atcacgttttcctctatcaacattcttagaaaacataatgctagttttttcttg 51219999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 707 - 815
Target Start/End: Complemental strand, 4183819 - 4183711
Alignment:
Q  707 tgaaacacctcattcaactccgctgcatctgcaagtcatggaattctcttatctctcttgatttcaattttgccaagaagcaacttcgcttgtcaacctt 806  Q
    ||||||||||| |||||||||| ||| | |||||||| ||||||||||||||||| | ||||| ||| || |||||||| || ||||| ||||| ||||     
T  4183819 tgaaacacctccttcaactccgttgcgtttgcaagtcctggaattctcttatctcccatgattccaaattcgccaagaaccaccttcgtttgtccacctc 4183720  T
Q  807 caaccacga 815  Q
    |||||||||    
T  4183719 caaccacga 4183711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 714 - 815
Target Start/End: Complemental strand, 4744650 - 4744550
Alignment:
Q  714 cctcattcaactccgctgcatctgcaagtcatggaattctcttatctctcttgatttcaattttgccaagaagcaacttcgcttgtcaaccttcaaccac 813  Q
    |||| |||||||||| ||| | |||||||| || |||||||||||||| | ||||| ||| || |||||||| || ||||| ||||| |||| |||||||    
T  4744650 cctccttcaactccgttgcgtttgcaagtcctg-aattctcttatctcccatgattccaaattcgccaagaaccaccttcgtttgtccacctccaaccac 4744552  T
Q  814 ga 815  Q
    ||    
T  4744551 ga 4744550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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