View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12081_low_11 (Length: 307)
Name: NF12081_low_11
Description: NF12081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12081_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 31638618 - 31638329
Alignment:
| Q |
1 |
aatagttaattcatattttctttgagtcgtggttttaaaatgtcaaatacttggaatactatttgctaattgcaggtgatgaaggtggcatggctcatta |
100 |
Q |
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| T |
31638618 |
aatagttaattcatattttctttgacttgtggttttaaaatgtcaaatacttggaatactatttgctaatttcaggtgatgaaggtggcatggctcatta |
31638519 |
T |
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| Q |
101 |
gttctaacaaaaaagtacaaaatgaatcaaggagaagagtcaagtcgttcgatatatcactatctctagtaagagtatagttttggaattaataggtttt |
200 |
Q |
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| T |
31638518 |
gttctaacaaaaaagtacaaaatgaatcaaggagaagagtcaagtcgttcgatatatcactatcactagtaagagtatagttttggaattaataggtttt |
31638419 |
T |
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| Q |
201 |
tctctaaactcagcacaagatatgcaggaaaagaaaaagaagcattttctttcttgttcaacagcgatgtatctgcttcaacgtgaatca |
290 |
Q |
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| T |
31638418 |
tctctaaactcagcacaagatatgcaggaaaagaaaaagaagcattttctttcttgttcaacagcgatgtatctgcttcaacgtgaatca |
31638329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 31671094 - 31671156
Alignment:
| Q |
29 |
gtggttttaaaatgtcaaatacttggaatactatttgctaattgcaggtgatgaaggtggcat |
91 |
Q |
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|||| ||||||||| |||||||||||| |||||||||||||||||| ||||| |||||||||| |
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| T |
31671094 |
gtggatttaaaatgccaaatacttggattactatttgctaattgcaagtgataaaggtggcat |
31671156 |
T |
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