View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12081_low_13 (Length: 281)

Name: NF12081_low_13
Description: NF12081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12081_low_13
NF12081_low_13
[»] chr5 (7 HSPs)
chr5 (14-274)||(2684787-2685047)
chr5 (118-234)||(3954361-3954477)
chr5 (194-234)||(3953851-3953891)
chr5 (137-229)||(14502685-14502777)
chr5 (68-102)||(14152651-14152685)
chr5 (151-208)||(38844078-38844135)
chr5 (79-183)||(20164368-20164472)
[»] chr4 (9 HSPs)
chr4 (52-177)||(5579780-5579905)
chr4 (56-178)||(13843090-13843214)
chr4 (65-208)||(9088062-9088208)
chr4 (78-208)||(53718214-53718342)
chr4 (151-235)||(22226958-22227040)
chr4 (61-208)||(25104642-25104784)
chr4 (127-232)||(31012544-31012649)
chr4 (127-167)||(21505261-21505301)
chr4 (111-187)||(50116285-50116361)
[»] chr2 (4 HSPs)
chr2 (76-187)||(13601296-13601406)
chr2 (56-208)||(32886488-32886640)
chr2 (71-209)||(26911158-26911296)
chr2 (62-96)||(15372424-15372458)
[»] chr1 (3 HSPs)
chr1 (64-234)||(23646701-23646870)
chr1 (69-222)||(44058159-44058309)
chr1 (64-208)||(23615434-23615574)
[»] chr7 (3 HSPs)
chr7 (66-208)||(44397374-44397517)
chr7 (127-183)||(5968376-5968432)
chr7 (59-104)||(5968331-5968376)
[»] chr6 (3 HSPs)
chr6 (64-208)||(8438875-8439019)
chr6 (79-185)||(24619357-24619465)
chr6 (104-210)||(1350495-1350599)
[»] chr8 (3 HSPs)
chr8 (61-208)||(32943513-32943662)
chr8 (65-208)||(3053341-3053486)
chr8 (111-178)||(32578238-32578305)
[»] chr3 (3 HSPs)
chr3 (61-104)||(49836265-49836308)
chr3 (151-234)||(55159558-55159641)
chr3 (151-211)||(55159482-55159542)


Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 274
Target Start/End: Complemental strand, 2685047 - 2684787
Alignment:
Q  14 cattgtatttaaccgtgaaccaataacaactaatttatgagtaacttttacataggcacaaacctaaataaaatttatttagacacacatatagataata 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  2685047 cattgtatttaaccgtgaaccaataacaactaatttatgagtaactcttacataggcacaaacctaa-taaaatttatttagacacacacatagataata 2684949  T
Q  114 aaacttaaaaggaaaatgatatcaagtgatctgagttaattatttctcttttaaatattatcattcatgtgtgtttatctaaatacttttgatttagaat 213  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2684948 aaacttaaaaggaaaatgatatcaagtgatttgacttaattatttctcttttaaatattatcattcatgtgtgtttatctaaatacttttgatttaggat 2684849  T
Q  214 tgtgcccaactaaatatttcttctaattgaatttactt-ttttcatcttcttcttcatctct 274  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  2684848 tgtgcccaactaaatatttcttctaattaaatttactttttttcatcttcttcttcatctct 2684787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 234
Target Start/End: Complemental strand, 3954477 - 3954361
Alignment:
Q  118 ttaaaaggaaaatgatatcaagtgatctgagttaattatttctcttttaaatattatcattcatgtgtgtttat-ct-aaatacttttgatttagaattg 215  Q
    |||||||  |||| |||| ||||||| ||| | ||||| || |||||||||| ||||||||  ||||| ||||| || |||||||||||||||||| ||     
T  3954477 ttaaaagataaataatattaagtgatatgactaaattacttttcttttaaattttatcatt--tgtgtatttatgctcaaatacttttgatttagagtta 3954380  T
Q  216 tgcccaactaaatatttct 234  Q
    |||||||||||||||||||    
T  3954379 tgcccaactaaatatttct 3954361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 3953891 - 3953851
Alignment:
Q  194 aaatacttttgatttagaattgtgcccaactaaatatttct 234  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  3953891 aaatacttttgatttagagttgtgcccaactaaatatttct 3953851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 14502777 - 14502685
Alignment:
Q  137 aagtgatctgagttaattatttctcttttaaatattatcattcatgtgtgtttatctaaatacttttgatttagaattgtgcccaactaaata 229  Q
    ||||||| ||| | ||||||||||||||||||| |||||||| | ||||||    |||||||||||||||||    ||||||||||| |||||    
T  14502777 aagtgatgtgactaaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaatacttttgatttgaggttgtgcccaaccaaata 14502685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 102
Target Start/End: Complemental strand, 14152685 - 14152651
Alignment:
Q  68 ggcacaaacctaaataaaatttatttagacacaca 102  Q
    ||||||||||||||||||| |||||||||||||||    
T  14152685 ggcacaaacctaaataaaaattatttagacacaca 14152651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 38844078 - 38844135
Alignment:
Q  151 aattatttctcttttaaatattatcattcatgtgtgtttatctaaatacttttgattt 208  Q
    |||||||| |||||||||| |||||| | |||||  | ||||||||||||||||||||    
T  38844078 aattatttatcttttaaattttatcacttatgtgaatatatctaaatacttttgattt 38844135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 20164368 - 20164472
Alignment:
Q  79 aaataaaatttatttagacacacatatagataataaaacttaaaaggaaaatgatatcaagtgatctgagttaattatttctcttttaaatattatcatt 178  Q
    |||| |||||||||| | |||| | |||||| ||||||  ||||||  ||||||| | ||| ||| ||| |||||||||||||||||| |  ||||||||    
T  20164368 aaatgaaatttatttggtcacatacatagatgataaaatgtaaaagtgaaatgatgttaagcgatatgacttaattatttctcttttatactttatcatt 20164467  T
Q  179 catgt 183  Q
     ||||    
T  20164468 tatgt 20164472  T

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Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 52 - 177
Target Start/End: Complemental strand, 5579905 - 5579780
Alignment:
Q  52 gagtaacttttacataggcacaaacctaaataaaatttatttagacacacatatagataataaaacttaaaaggaaaatgatatcaagtgatctgagtta 151  Q
    |||||| | |||| |||||||| ||||||||||||||||||  |||||||||||   | |||||| ||||||| |||||||||| || |||| ||| | |    
T  5579905 gagtaagtcttacttaggcacacacctaaataaaatttattgggacacacatatgattcataaaatttaaaagaaaaatgatattaaatgatgtgactaa 5579806  T
Q  152 attatttctcttttaaatattatcat 177  Q
    |||||||||||||||||| |||||||    
T  5579805 attatttctcttttaaattttatcat 5579780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 178
Target Start/End: Original strand, 13843090 - 13843214
Alignment:
Q  56 aacttttacataggcacaaacctaaataaaatttatttaga--cacacatatagataataaaacttaaaaggaaaatgatatcaagtgatctgagttaat 153  Q
    |||| ||| |||| || ||||||||||||| ||||||| ||  |||||| |||||| |||||| |||||||  |||| |||| || |||| |||  | ||    
T  13843090 aactcttatatagacataaacctaaataaagtttatttcgatacacacacatagatcataaaatttaaaagtgaaataatattaaatgatgtgacattat 13843189  T
Q  154 tatttctcttttaaatattatcatt 178  Q
    |||||||||||||||| ||||||||    
T  13843190 tatttctcttttaaattttatcatt 13843214  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 208
Target Start/End: Original strand, 9088062 - 9088208
Alignment:
Q  65 ataggcacaaacctaaataaaatttatttaga----cacacat-atagataataaaacttaaaaggaaaatgatatcaagtgatctgagttaattatttc 159  Q
    ||||||||||| |||||||||| |||||| ||    ||||||| || |||||  ||| |||||||  ||||||||| |||| || ||| | || ||||||    
T  9088062 ataggcacaaatctaaataaaagttatttggaaacacacacatgattgataa--aaatttaaaagagaaatgatattaagtaatgtgactaaactatttc 9088159  T
Q  160 tcttttaaatattatcattcatgtgtgtttatctaaatacttttgattt 208  Q
    |||||||||| |||||||||| ||  || | ||||||||||||||||||    
T  9088160 tcttttaaattttatcattcaagtaagtgtgtctaaatacttttgattt 9088208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 208
Target Start/End: Original strand, 53718214 - 53718342
Alignment:
Q  78 taaataaaatttatttagacacacatatagataataaaacttaaaaggaaaatgatatcaagtgatctgagttaattatttctcttttaaatattatcat 177  Q
    ||||||||||| | || |||||||| |||  | |||||| ||||||   ||||||||| ||||||| ||| | ||||||||||||||||||| ||| | |    
T  53718214 taaataaaattcagttggacacacacata--tgataaaatttaaaaatgaaatgatattaagtgatgtgattaaattatttctcttttaaattttaccgt 53718311  T
Q  178 tcatgtgtgtttatctaaatacttttgattt 208  Q
    | |||| ||  |||| |||||||||||||||    
T  53718312 ttatgtatgcatatccaaatacttttgattt 53718342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 22227040 - 22226958
Alignment:
Q  151 aattatttctcttttaaatattatcattcatgtgtgtttatctaaatacttttgatttagaattgtgcccaactaaatatttctt 235  Q
    ||||||||||||||||||| |||||||| || ||||  |  |||||||||||||||||||  |||||  ||||||| ||||||||    
T  22227040 aattatttctcttttaaattttatcatttatatgtg--tgcctaaatacttttgatttagggttgtgttcaactaagtatttctt 22226958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 208
Target Start/End: Original strand, 25104642 - 25104784
Alignment:
Q  61 ttacataggcacaaacctaaataaaatttatttagacacacatatagataataaaacttaaaaggaaaatgatatcaagtgatctgagttaattatttct 160  Q
    |||||||  ||||| ||||||| |||||||||| ||||||  |||   |||||||| ||||||| ||||| |||| || | || ||| | ||||||||||    
T  25104642 ttacatatacacaaccctaaattaaatttatttggacaca--tattattaataaaatttaaaagaaaaataatattaaataatatgactaaattatttct 25104739  T
Q  161 cttttaaatattatcattcatgtgtgtttatctaaatacttttgattt 208  Q
    ||||||| | ||||||||||||||| |  |  ||||||||||||||||    
T  25104740 cttttaatt-ttatcattcatgtgtat--acttaaatacttttgattt 25104784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 232
Target Start/End: Complemental strand, 31012649 - 31012544
Alignment:
Q  127 aaatgatatcaagtgatctgagttaattatttctcttttaaatattatcattcatgtgtgtttatctaaatacttttgatttagaattgtgcccaactaa 226  Q
    ||||||||| || |||| ||| | ||||||||||||||||| | ||| |||  ||||||||||  | ||||||||||||||| |  ||||| ||||||||    
T  31012649 aaatgatattaaatgatgtgactaaattatttctcttttaagttttaccatatatgtgtgtttgcccaaatacttttgatttggggttgtgtccaactaa 31012550  T
Q  227 atattt 232  Q
     |||||    
T  31012549 gtattt 31012544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 21505301 - 21505261
Alignment:
Q  127 aaatgatatcaagtgatctgagttaattatttctcttttaa 167  Q
    ||||||||| ||||||||||| | |||||||||||||||||    
T  21505301 aaatgatattaagtgatctgactaaattatttctcttttaa 21505261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 50116285 - 50116361
Alignment:
Q  111 ataaaacttaaaaggaaaatgatatcaagtgatctgagttaattatttctcttttaaatattatcattcatgtgtgt 187  Q
    |||||| |||||||  |||| |||| ||||| | ||| | ||||||||||||||||||| ||||||||  |||||||    
T  50116285 ataaaatttaaaagataaataatattaagtgttgtgattaaattatttctcttttaaattttatcatttttgtgtgt 50116361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 76 - 187
Target Start/End: Complemental strand, 13601406 - 13601296
Alignment:
Q  76 cctaaataaaatttatttagacacacatatagataataaaacttaaaaggaaaatgatatcaagtgatctgagttaattatttctcttttaaatattatc 175  Q
    |||||||||||||||||| |||||||| ||   | |||||| ||||||| |||||||||| | ||||| ||||| |||||||||| |||||||| |||||    
T  13601406 cctaaataaaatttatttggacacacacatgactgataaaatttaaaag-aaaatgatattaggtgatgtgagtaaattatttcttttttaaattttatc 13601308  T
Q  176 attcatgtgtgt 187  Q
    ||||||||||||    
T  13601307 attcatgtgtgt 13601296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 208
Target Start/End: Original strand, 32886488 - 32886640
Alignment:
Q  56 aacttttacataggcacaaacctaaataaaatttatttagacacacata--tagataataaaacttaaaaggaaaatgatatcaagtgatctgagttaat 153  Q
    |||| |||||||| |||||| |||||||||||| |||||  | || | |  ||||| |||||| ||||||   ||||||||| ||||||| ||| ||||     
T  32886488 aactcttacatagccacaaatctaaataaaattcatttaagcgcatacaagtagatgataaaatttaaaaatgaaatgatattaagtgatgtgacttaac 32886587  T
Q  154 tatttctcttttaaatattatcattcatgtgtgtttatctaaatacttttgattt 208  Q
    |||||||| ||||||| ||||||||  ||||||| | || |||||||||||||||    
T  32886588 tatttctcatttaaattttatcatt--tgtgtgtgtgtccaaatacttttgattt 32886640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 209
Target Start/End: Original strand, 26911158 - 26911296
Alignment:
Q  71 acaaacctaaataaaatttatttagacacacata--tagataataaaacttaaaaggaaaatgatatcaagtgatctgagttaattatttctcttttaaa 168  Q
    |||||||||||| ||||| ||||  ||||| |||  |||||||||||| |||||||  ||||| ||| || ||   ||| |||||||||| |||||||||    
T  26911158 acaaacctaaattaaattcatttgaacacaaatacatagataataaaatttaaaagtgaaatgttattaaatggcgtgacttaattatttatcttttaaa 26911257  T
Q  169 tattatcattcatgtgtgtttatctaaatacttttgattta 209  Q
    | |||| ||| |||||||  | || ||||||||||||||||    
T  26911258 ttttattatttatgtgtg--tgtcaaaatacttttgattta 26911296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 96
Target Start/End: Complemental strand, 15372458 - 15372424
Alignment:
Q  62 tacataggcacaaacctaaataaaatttatttaga 96  Q
    ||||||| |||||||||||||||||||||||||||    
T  15372458 tacatagacacaaacctaaataaaatttatttaga 15372424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 64 - 234
Target Start/End: Complemental strand, 23646870 - 23646701
Alignment:
Q  64 cataggcacaaacctaaataaaatttatttagacacacatatagataataaaacttaaaaggaaaatgatatcaagtgatctgagttaattatttctctt 163  Q
    |||||||||||||| ||||||||||||||| |||||||| ||   | |||||| |||||||  ||||||||| ||||||  ||| | |||||||| || |    
T  23646870 cataggcacaaacccaaataaaatttatttggacacacacatgattgataaaatttaaaagataaatgatattaagtga-gtgactaaattatttttcat 23646772  T
Q  164 ttaaatattatcattcatgtgtgtttatctaaatacttttgatttagaattgtgcccaactaaatatttct 234  Q
    |||||| ||||||||||  ||  | |||||||||| ||||||||| || ||||| ||||| || |||||||    
T  23646771 ttaaattttatcattcacatgaatgtatctaaatatttttgatttggagttgtgtccaaccaagtatttct 23646701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 69 - 222
Target Start/End: Original strand, 44058159 - 44058309
Alignment:
Q  69 gcacaaacctaaataaaatttatttagacacacatatagataataaaacttaaaaggaaaatgatatcaagtgatctgagttaattatttctcttttaaa 168  Q
    ||||||||||||||||||||||||| |||| ||| |||||| |||||| |||||||  |||||||||  ||||||  || | ||||||||| ||||||||    
T  44058159 gcacaaacctaaataaaatttatttggacatacacatagatgataaaatttaaaagtgaaatgatatttagtgat-ggactaaattatttcccttttaaa 44058257  T
Q  169 tattatcattcatgtgtgtttatctaaatacttttgatttagaattgtgcccaa 222  Q
    | |||| ||| |||||||     ||||||||||||||||| || ||||||||||    
T  44058258 ttttattattaatgtgtg--cgcctaaatacttttgatttggagttgtgcccaa 44058309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 208
Target Start/End: Complemental strand, 23615574 - 23615434
Alignment:
Q  64 cataggcacaaacctaaataaaatttatttagacacacat-atagataataaaacttaaaaggaaaatgatatcaagtgatctgagttaattatttctct 162  Q
    |||||||||||||| ||||||||||||||| ||||||||| ||   | |||||| |||||||  ||||||||| ||||||  ||| | |||||||| |||    
T  23615574 cataggcacaaacccaaataaaatttatttggacacacatgat---tgataaaatttaaaagataaatgatattaagtga-gtgactaaattattt-tct 23615480  T
Q  163 tttaaatattatcattcatgtgtgtttatctaaatacttttgattt 208  Q
    ||||||| |||||||||| |||  | |||||||||| |||| ||||    
T  23615479 tttaaattttatcattcacgtgaatgtatctaaatattttttattt 23615434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 208
Target Start/End: Original strand, 44397374 - 44397517
Alignment:
Q  66 taggcacaaacctaaataaaatttatttag-acacacatatagata-ataaaacttaaaaggaaaatgatatcaagtgatctgagttaattatttctctt 163  Q
    |||||||||||| ||||||||||||| | | ||||||| | ||||  |||||| |||||||  |||| |||| ||||||| ||| | |||||||||||||    
T  44397374 taggcacaaacccaaataaaatttatgtggcacacacaca-agattgataaaatttaaaagagaaatcatattaagtgatgtgactaaattatttctctt 44397472  T
Q  164 ttaaatattatcattcatgtgtgtttatctaaatacttttgattt 208  Q
    |||||| |||||||||| ||| || | ||||||||||||||||||    
T  44397473 ttaaattttatcattcaagtgagtatgtctaaatacttttgattt 44397517  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 5968432 - 5968376
Alignment:
Q  127 aaatgatatcaagtgatctgagttaattatttctcttttaaatattatcattcatgt 183  Q
    ||||||||| |||| || ||| | ||||||||||||||||||| |||||||||||||    
T  5968432 aaatgatattaagtaatgtgattaaattatttctcttttaaattttatcattcatgt 5968376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 5968331 - 5968376
Alignment:
Q  59 ttttacataggcacaaacctaaataaaatttatttagacacacata 104  Q
    |||| |||||||||||  ||||||||||||||||| ||||||||||    
T  5968331 ttttgcataggcacaacactaaataaaatttatttggacacacata 5968376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 208
Target Start/End: Original strand, 8438875 - 8439019
Alignment:
Q  64 cataggcacaaacctaaataaaatttatttagacacacatatagataataaaacttaaaaggaaaatgatatcaagtgatctgagttaattatttctctt 163  Q
    ||||| |||||||| | ||||||||||||||| |||||| ||   | |||||| |||||||  | ||||||| ||||||| ||| | |||||||||||||    
T  8438875 catagacacaaacccatataaaatttatttaggcacacacatgattgataaaatttaaaagagagatgatattaagtgatgtgattaaattatttctctt 8438974  T
Q  164 ttaaatattatcattcatgtgtgtttatctaaatacttttgattt 208  Q
    |||| | ||||||||||||||    | ||||||||||||||||||    
T  8438975 ttaatttttatcattcatgtgaacatgtctaaatacttttgattt 8439019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 79 - 185
Target Start/End: Complemental strand, 24619465 - 24619357
Alignment:
Q  79 aaataaaatttatttagac--acacatatagataataaaacttaaaaggaaaatgatatcaagtgatctgagttaattatttctcttttaaatattatca 176  Q
    ||||||||||||||| | |  ||||||||   |||||||| ||||||| |||||||||| ||||||| | | | ||||||||||||||||||| ||||||    
T  24619465 aaataaaatttatttgggcgcacacatatgattaataaaatttaaaagaaaaatgatattaagtgatgtaactaaattatttctcttttaaattttatca 24619366  T
Q  177 ttcatgtgt 185  Q
    |||||||||    
T  24619365 ttcatgtgt 24619357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 1350599 - 1350495
Alignment:
Q  104 atagataataaaacttaaaaggaaaatgatatcaagtgatctgagttaattatttctcttttaaatattatcattcatgtgtgtttatctaaatactttt 203  Q
    |||||| |||||| || ||||  ||| ||||| ||||||| ||| |||||||| |||| ||||||| |||||||| |||| ||| |  ||||||||||||    
T  1350599 atagatgataaaattttaaagtgaaacgatattaagtgatatgatttaattatatctcatttaaattttatcatttatgtatgtgt--ctaaatactttt 1350502  T
Q  204 gatttag 210  Q
    |||||||    
T  1350501 gatttag 1350495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 208
Target Start/End: Complemental strand, 32943662 - 32943513
Alignment:
Q  61 ttacataggcacaaacctaaataaaatttatttagacacacatatagataataaaacttaaaaggaa--aatgatatcaagtgatctgagttaattattt 158  Q
    |||||||| ||||||||||||||||||| ||||||  ||||| || ||  |||||| ||| |||  |  || ||||| ||||||| ||| ||||||||||    
T  32943662 ttacatagtcacaaacctaaataaaattcatttaggtacacacatggacgataaaatttagaagtgatcaacgatattaagtgatatgacttaattattt 32943563  T
Q  159 ctcttttaaatattatcattcatgtgtgtttatctaaatacttttgattt 208  Q
     || ||||||| |||| ||| ||||||||   || |||||||||||||||    
T  32943562 ttcatttaaattttattatttatgtgtgtgcgtccaaatacttttgattt 32943513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 208
Target Start/End: Complemental strand, 3053486 - 3053341
Alignment:
Q  65 ataggcacaaacctaaataaaatttatttagac--acacatatagataataaaacttaaaaggaaaatgatatcaagtgatctgagttaattatttctct 162  Q
    |||| ||||| |||||||||||||||||||| |  ||||  ||   | |||||| |||||||  ||||  ||| ||||||| ||| | ||||||||||||    
T  3053486 atagacacaaccctaaataaaatttatttaggcgtacacccatgattgataaaatttaaaagagaaattttattaagtgatgtgactaaattatttctct 3053387  T
Q  163 tttaaatattatcattcatgtgtgtttatctaaatacttttgattt 208  Q
    ||||||| |||||||| |||||||| |   |||||||| |||||||    
T  3053386 tttaaattttatcatttatgtgtgtatgcttaaatactcttgattt 3053341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 32578238 - 32578305
Alignment:
Q  111 ataaaacttaaaaggaaaatgatatcaagtgatctgagttaattatttctcttttaaatattatcatt 178  Q
    |||||| |||||||  |||||||||||||| || ||| | |||||||| |||||||||| ||||||||    
T  32578238 ataaaatttaaaagagaaatgatatcaagttatatgattaaattatttttcttttaaattttatcatt 32578305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 49836265 - 49836308
Alignment:
Q  61 ttacataggcacaaacctaaataaaatttatttagacacacata 104  Q
    |||||||| |||||||||||||||||||||| | ||||||||||    
T  49836265 ttacatagacacaaacctaaataaaatttatatggacacacata 49836308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 55159558 - 55159641
Alignment:
Q  151 aattatttctcttttaaatattatcattcatgtgtgtttatctaaatacttttgatttagaattgtgcccaactaaatatttct 234  Q
    |||||||| |||||||||| ||||| ||||  || || ||| |||||||||||||||| |  ||||||| ||| ||||||||||    
T  55159558 aattatttttcttttaaattttatcgttcacctgagtgtatttaaatacttttgatttgggtttgtgccgaaccaaatatttct 55159641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 55159542 - 55159482
Alignment:
Q  151 aattatttctcttttaaatattatcattcatgtgtgtttatctaaatacttttgatttaga 211  Q
    ||||||||||||||||||| |||||| ||||| |||| || |||||||  ||| |||||||    
T  55159542 aattatttctcttttaaattttatcaatcatgcgtgtgtacctaaataaattttatttaga 55159482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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