View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12081_low_16 (Length: 254)

Name: NF12081_low_16
Description: NF12081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12081_low_16
NF12081_low_16
[»] chr2 (7 HSPs)
chr2 (5-129)||(39503931-39504055)
chr2 (5-179)||(39604435-39604608)
chr2 (3-179)||(39099706-39099881)
chr2 (8-165)||(2362812-2362968)
chr2 (146-206)||(39144688-39144748)
chr2 (145-218)||(39425562-39425635)
chr2 (145-236)||(39493468-39493559)
[»] chr3 (1 HSPs)
chr3 (59-179)||(51576104-51576224)


Alignment Details
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 39503931 - 39504055
Alignment:
Q  5 aaacaaaaaatttctcaaaccaacataccagaagctttatcagcaaaaccaagaattccaaacagctctgcagccatctcgtgctgagcagcaaaaccaa 104  Q
    |||||||| ||||||||||| |||||||| ||||||||||| |||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||    
T  39503931 aaacaaaacatttctcaaacgaacataccggaagctttatctgcaaaaccaagagttccaaacagctctacagctatctcgtgctgagcagcaaaaccaa 39504030  T
Q  105 aaagcttaagaattccatcttcatc 129  Q
    ||||||| | || | ||||||||||    
T  39504031 aaagcttgaaaacttcatcttcatc 39504055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 39604608 - 39604435
Alignment:
Q  5 aaacaaaaaatttctcaaaccaacataccagaagctttatcagcaaaaccaagaattccaaacagctctgcagccatctcgtgctgagcagcaaaaccaa 104  Q
    |||||||| |||||| |||| |||||||||||||||||||| |||||||| ||| |||||||||||||| |||| |||| || ||||||||||||  | |    
T  39604608 aaacaaaacatttct-aaactaacataccagaagctttatcggcaaaacccagagttccaaacagctctacagctatcttgtcctgagcagcaaactcga 39604510  T
Q  105 aaagcttaagaattccatcttcatccaaacaaaccgccaatccataaattgacacaaggagtagaaaacctagaa 179  Q
    ||||||| | || | |||||||||| ||| ||   ||||||||||||||||||||||||||||||||||| ||||    
T  39604509 aaagctttaaaacttcatcttcatcgaaagaaggagccaatccataaattgacacaaggagtagaaaacccagaa 39604435  T

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Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 179
Target Start/End: Complemental strand, 39099881 - 39099706
Alignment:
Q  3 taaaacaaaaaatttctcaaaccaacataccagaagctttatcagcaaaaccaagaattccaaacagctctgcagccatctcgtgctgagcagcaaaacc 102  Q
    ||||||||||  ||||| |||| |||||||||||||||||||| |||||||| ||||||||||| |||| | |||| |||| ||||||||||||||| ||    
T  39099881 taaaacaaaacttttct-aaactaacataccagaagctttatcggcaaaacccagaattccaaagagctttacagctatcttgtgctgagcagcaaaccc 39099783  T
Q  103 aaaaagcttaagaattccatcttcatccaaacaaaccgccaatccataaattgacacaaggagtagaaaacctagaa 179  Q
    ||||||||| | || | |||||||||| ||| ||   ||||||  ||||||||||| ||||||||||||||| ||||    
T  39099782 aaaaagctttaaaacttcatcttcatcaaaagaaggagccaatttataaattgacagaaggagtagaaaaccaagaa 39099706  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 2362968 - 2362812
Alignment:
Q  8 caaaaaatttctcaaaccaacataccagaagctttatcagcaaaaccaagaattccaaacagctctgcagccatctcgtgctgagcagcaaaaccaaaaa 107  Q
    ||||| |||||| |||| |||||||||||| ||||||  || ||||| | | | |||||||||||| |||  |||| ||| ||||||||||| |||||||    
T  2362968 caaaacatttct-aaactaacataccagaaactttatgtgccaaacccatagtcccaaacagctctacagatatcttgtgttgagcagcaaacccaaaaa 2362870  T
Q  108 gcttaagaattccatcttcatccaaacaaaccgccaatccataaattgacacaaggag 165  Q
    |||| | |||| |||||||||| ||| ||    |||||||||||||||||| ||||||    
T  2362869 gctttaaaatttcatcttcatcgaaagaagaaaccaatccataaattgacagaaggag 2362812  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 39144748 - 39144688
Alignment:
Q  146 ccataaattgacacaaggagtagaaaacctagaattaccgctgaattgtcaatgttttgac 206  Q
    ||||||||||||| |||||||||||||||||||||  |||||||||| ||  |||||||||    
T  39144748 ccataaattgacagaaggagtagaaaacctagaatcgccgctgaattttctgtgttttgac 39144688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 39425562 - 39425635
Alignment:
Q  145 tccataaattgacacaaggagtagaaaacctagaattaccgctgaattgtcaatgttttgacctatgtaagctt 218  Q
    |||||||||||||| ||| ||||||||||| ||||   |||||||||| ||| ||||||||| ||||| |||||    
T  39425562 tccataaattgacagaagaagtagaaaaccaagaacagccgctgaattttcattgttttgacttatgttagctt 39425635  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 39493468 - 39493559
Alignment:
Q  145 tccataaattgacacaaggagtagaaaacctagaattaccgctgaattgtcaatgttttgacctatgtaagcttccacatccagagctagct 236  Q
    |||||||||||||| ||||||||||||||||||||   |  ||||||| ||  ||||||||| ||||| ||||| || ||| || |||||||    
T  39493468 tccataaattgacagaaggagtagaaaacctagaaccgcaactgaattttctgtgttttgacttatgttagctttcatatcaagtgctagct 39493559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 179
Target Start/End: Complemental strand, 51576224 - 51576104
Alignment:
Q  59 attccaaacagctctgcagccatctcgtgctgagcagcaaaaccaaaaagcttaagaattccatcttcatccaaacaaaccgccaatccataaattgaca 158  Q
    ||||||||||||||| | || || | |||||||||| |||| ||||||  ||| | |||| |||||| ||| ||| ||    ||||||||||||||||||    
T  51576224 attccaaacagctctactgctattttgtgctgagcaacaaatccaaaatacttcaaaatttcatctttatcaaaataaggaaccaatccataaattgaca 51576125  T
Q  159 caaggagtagaaaacctagaa 179  Q
     |||||| ||| |||| ||||    
T  51576124 gaaggagcagataaccaagaa 51576104  T

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