View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12081_low_18 (Length: 244)
Name: NF12081_low_18
Description: NF12081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12081_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 54680857 - 54680645
Alignment:
| Q |
12 |
aagaaacaagcatgtgaatttatttcaatcaatatatatactttcagttcacaatcatagttgtgatccttcacattgcatggtctcaaatcgagtatgg |
111 |
Q |
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| T |
54680857 |
aagaaacaagcatgtgaatttatttcaatcaatatatatactttcagttcacaatcatagttgtgatccttcacattgcatggtctcaaatcgagtatgg |
54680758 |
T |
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| Q |
112 |
aatgattgacatatgcatgcatcaaaccaacaaatcactcgagaatccggtaaatggatacagatatcaatatcatctcacataaacacatttatttgat |
211 |
Q |
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| T |
54680757 |
aatgattgacatatgcatgcatcaaaccaacaaatcactcgagaatccggtaaatggatacagatatcaatatcatctcacataaatacatttatttgat |
54680658 |
T |
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| Q |
212 |
ttcatacgtgtgt |
224 |
Q |
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| T |
54680657 |
ttgatacgtgtgt |
54680645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 54714881 - 54714682
Alignment:
| Q |
12 |
aagaaacaagcatgtgaatttatttcaatcaatatatatactttcagttcacaatcatagttgtgatccttcacattgcatggtctcaaatcgagtatgg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
54714881 |
aagaaacaagcatgtgaatttatttcaatcaatatatatactttcagttcacaatcatagctgtgatccttcacattgcctggtctcaaatcgagtatgg |
54714782 |
T |
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| Q |
112 |
aatgattgacatatgcatgcatcaaaccaacaaatcactcgagaatccggtaaatggatacagatatcaatatcatctcacataaacacatttatttgat |
211 |
Q |
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| T |
54714781 |
aatggttgac--atgcacgcatcaaaccaacaaatcactcgagaatccggcaaatggatacagatatcaatatcatctcacataaacacatttatttgat |
54714684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 161
Target Start/End: Complemental strand, 54721741 - 54721659
Alignment:
| Q |
77 |
atccttcacattgcatggtctcaaatcgagtatgg-aatgattgacatatgcatgcatcaaaccaacaaatcactcgagaatccgg |
161 |
Q |
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|||||||||| ||| |||| || |||||||||||| |||| ||||| |||| ||||||||||| |||||| |||||||||||||| |
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| T |
54721741 |
atccttcacaatgcctggtttcgaatcgagtatggaaatggttgac--atgcgtgcatcaaacc-acaaattactcgagaatccgg |
54721659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 161
Target Start/End: Complemental strand, 5297894 - 5297812
Alignment:
| Q |
77 |
atccttcacattgcatggtctcaaatcgagtat-ggaatgattgacatatgcatgcatcaaaccaacaaatcactcgagaatccgg |
161 |
Q |
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| T |
5297894 |
atccttcacaatgcctggtttcaaatcgagtatcgaaatggttgac--atgcatgcatcaaacc-acaaattactcgagaatccgg |
5297812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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