View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12081_low_2 (Length: 980)

Name: NF12081_low_2
Description: NF12081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12081_low_2
NF12081_low_2
[»] chr1 (2 HSPs)
chr1 (18-965)||(34973646-34974572)
chr1 (828-959)||(41413596-41413724)
[»] chr6 (5 HSPs)
chr6 (752-957)||(26976826-26977035)
chr6 (752-938)||(18967262-18967452)
chr6 (755-957)||(27874645-27874851)
chr6 (802-933)||(21965580-21965709)
chr6 (462-504)||(30986511-30986553)
[»] chr3 (2 HSPs)
chr3 (752-959)||(54545318-54545529)
chr3 (802-957)||(5819264-5819417)
[»] scaffold0074 (1 HSPs)
scaffold0074 (806-957)||(28028-28177)
[»] chr2 (3 HSPs)
chr2 (752-957)||(829654-829863)
chr2 (795-907)||(28715296-28715406)
chr2 (795-955)||(13840912-13841068)
[»] chr4 (3 HSPs)
chr4 (795-957)||(30946165-30946325)
chr4 (795-957)||(48697803-48697963)
chr4 (755-957)||(42270078-42270284)
[»] chr5 (2 HSPs)
chr5 (795-957)||(41722585-41722745)
chr5 (802-907)||(34359412-34359517)
[»] chr8 (1 HSPs)
chr8 (755-957)||(9440027-9440233)
[»] chr7 (2 HSPs)
chr7 (795-874)||(2324096-2324175)
chr7 (795-955)||(22510094-22510252)


Alignment Details
Target: chr1 (Bit Score: 727; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 727; E-Value: 0
Query Start/End: Original strand, 18 - 965
Target Start/End: Complemental strand, 34974572 - 34973646
Alignment:
Q  18 attttgcttatcgataaaagtaactaaacaatactaattagttatgtattagatgtagttagtgtaccaaaacaaattatnnnnnnn--tgactggcgct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||| | |||    
T  34974572 attttgcttatcgataaaagtaactaaacaatactaattagttatgtattagatgtagttagtgtaccaaaacaaattataaaaaaaaatgactagtgct 34974473  T
Q  116 tgatgcttgtcggtgttagttttataggataggatttgaactccgccatacagtgtcggattatgtaatattttgattaactaaggaattggatttttga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34974472 tgatgcttgtcggtgttagttttataggataggatttgaactccgccatacagtgtcggattatgtaatattttgattaactaaggaattggatttttga 34974373  T
Q  216 aataaattacctcttactctcgtcatatccaatcagctaatgtcaacaatttttattttctttacataatacataacacaataaaagaacactgaatgaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34974372 aataaattacctcttactctcgtcatatccaatcagctaatgtcaaccatttttattttctttacataatacataacacaataaaagaacactgaatgaa 34974273  T
Q  316 attgtaatgatacatttaaatatgttgggtattaatgtaataaaatattatcacgcaactaaaataagatgtctgtctaaataggagaaacctcacagga 415  Q
    ||||||||||||||||||||||||||||||||            |||||||||  ||||||||||||||||||| |||||||| ||||||||||||||||    
T  34974272 attgtaatgatacatttaaatatgttgggtat------------atattatcaatcaactaaaataagatgtctctctaaataagagaaacctcacagga 34974185  T
Q  416 gaaatttgatgggagaaactattttttctctctatttttcctctcttaactctacaaaatcaaaacacttgttgttgtgttactttgttatgggacggga 515  Q
    |||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||| ||||||||||    
T  34974184 gaaacttcatggaagaaactattttttctctctatttttcctctcttaactctacaaaatcaaaacacttgttgt---gttactttgttctgggacggga 34974088  T
Q  516 tgtctcccttcattgccaatgtcttatatatagtcgagtaatttcgctaattcacttattctaattattgcacctattgcgattttcaactttgtgcagt 615  Q
    |||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34974087 tgtctcccttcattacgaatgtcttatatatagtggagtaatttcgctaattcacttattctaattattgcacctattgcgattttcaactttgtgcagt 34973988  T
Q  616 aaactagaatgagaactaagaaaattatcggaaacaatgtttgactttcacctagagtgactttacacatgttcaaacatgttcacaatctcccacttaa 715  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||     
T  34973987 aaactagaatgagaactaagaaaattatcggaaacaatgtttgactttcacctagagtgactttacacatg----------ttcacaatctcccacttag 34973898  T
Q  716 gtctacttttataagctttcagtaggccatacgattgaggatcaacaccatataaacttgtcaatattgattttgtcgt--catctgttaggttatcatt 813  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||| |||||||||||||    
T  34973897 gtctacttttataagctttcagtaggccatacgattgaggatcaacaacatataaacttgtcaatattgattttgtcgtcacatcttttaggttatcatt 34973798  T
Q  814 ggtgtgaatcttcagcatatccacacttctctcttccactacttcttaaataaaatgatattaaacgcctatttgcttcgtccttgaatgaaaaaagttg 913  Q
     ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34973797 agtgtgaatcttcagcatatccacacttctctcttccactacttctcaaataaaatgatattaaatgcctatttgcttcgtccttgaatgaaaaaagttg 34973698  T
Q  914 gatttcatgcaatgtgcaagacactttaactttcacaatacacaatgatgtc 965  Q
    |||||||| |||||||||||||||||||||||||| |||||||||| |||||    
T  34973697 gatttcatacaatgtgcaagacactttaactttcataatacacaataatgtc 34973646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 828 - 959
Target Start/End: Original strand, 41413596 - 41413724
Alignment:
Q  828 gcatatccacacttctctcttccactacttcttaaataaaatgatattaaacgcctatttgcttcgtccttgaatgaaaaaagttggatttcatgcaatg 927  Q
    ||||||||||| |||  || |||| ||||||| ||  ||||||||||| ||||||||  ||| | ||||||||||| ||   | |||||| | |||||||    
T  41413596 gcatatccacatttccttcatccattacttctgaac-aaaatgatattgaacgcctacatgccttgtccttgaatggaag--gctggattacttgcaatg 41413692  T
Q  928 tgcaagacactttaactttcacaatacacaat 959  Q
    ||||||||||| ||||| |||||||| |||||    
T  41413693 tgcaagacactctaactatcacaatatacaat 41413724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 3e-35; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 752 - 957
Target Start/End: Original strand, 26976826 - 26977035
Alignment:
Q  752 gaggatcaacaccatataaacttgtcaatattgat----tttgtcgt--catctgttaggttatcattggtgtgaatcttcagcatatccacacttctct 845  Q
    ||||||| ||||||||||||||||||| | |||||    |||||| |  |||||| |||||||||||| |||||||||||  |||||||||| |||| ||    
T  26976826 gaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttttgcatatccacgcttccct 26976925  T
Q  846 cttccactacttcttaaataaaatgatattaaacgcctatttgcttcgtccttgaatgaaaaaagttggatttcatgcaatgtgcaagacactttaactt 945  Q
    | ||||||||||||  || ||||||||||| ||| ||||| |||||||||||||||||  ||||| |||||| | ||||||||||||| |||| | |||     
T  26976926 cctccactacttctcgaacaaaatgatattgaacacctatgtgcttcgtccttgaatg--aaaagctggattccttgcaatgtgcaaggcactctgactg 26977023  T
Q  946 tcacaatacaca 957  Q
    ||||||||||||    
T  26977024 tcacaatacaca 26977035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 752 - 938
Target Start/End: Complemental strand, 18967452 - 18967262
Alignment:
Q  752 gaggatcaacaccatataaacttgtcaatattgatt----ttgtcgtca--tctgttaggttatcattggtgtgaatcttcagcatatccacacttctct 845  Q
    ||||||| |||||||||||||||||||  |||||||    ||||| |||  |||| ||| ||||||||||||||||||||| |||| |||||||||| ||    
T  18967452 gaggatcgacaccatataaacttgtcagcattgattggttttgtcatcacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct 18967353  T
Q  846 cttccactacttcttaaataaaatgatattaaacgcctatttgcttcgtccttgaatgaaaaaagttggatttcatgcaatgtgcaagacact 938  Q
    | |||||||||| |  || ||||||||||| ||||||||| || ||||||||||||||  |||||||||||| | ||||||||| ||| ||||    
T  18967352 cctccactacttgtcgaacaaaatgatatttaacgcctatgtgtttcgtccttgaatg--aaaagttggattccttgcaatgtgtaaggcact 18967262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 755 - 957
Target Start/End: Original strand, 27874645 - 27874851
Alignment:
Q  755 gatcaacaccatataaacttgtcaatattgat----tttgtcgt--catctgttaggttatcattggtgtgaatcttcagcatatccacacttctctctt 848  Q
    |||| ||||||||||||||||||| | |||||    |||||| |  |||||| |||||||||||| |||||||||||| |||||||||| ||||  || |    
T  27874645 gatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttccttcct 27874744  T
Q  849 ccactacttcttaaataaaatgatattaaacgcctatttgcttcgtccttgaatgaaaaaagttggatttcatgcaatgtgcaagacactttaactttca 948  Q
    | ||||||||   || ||||||||||| || |||||| || ||||||||||||||  ||||| |||||| | |||||| |||||| |||| | ||| |||    
T  27874745 ctactacttcgcgaacaaaatgatattgaatgcctatgtgtttcgtccttgaatg--aaaagctggattccttgcaatatgcaaggcactctgactgtca 27874842  T
Q  949 caatacaca 957  Q
    |||||||||    
T  27874843 caatacaca 27874851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 802 - 933
Target Start/End: Complemental strand, 21965709 - 21965580
Alignment:
Q  802 taggttatcattggtgtgaatcttcagcatatccacacttctctcttccactacttcttaaataaaatgatattaaacgcctatttgcttcgtccttgaa 901  Q
    |||||||||||||||||||   ||| |||||||||| ||||  || | |||||||||| ||| ||||| ||||| ||||||| | |||| ||| ||||||    
T  21965709 taggttatcattggtgtgagcattctgcatatccacccttcattccttcactacttctcaaacaaaataatattgaacgcctgtgtgctccgttcttgaa 21965610  T
Q  902 tgaaaaaagttggatttcatgcaatgtgcaag 933  Q
    ||  |||||||||||| | || ||||||||||    
T  21965609 tg--aaaagttggattccttgaaatgtgcaag 21965580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 462 - 504
Target Start/End: Complemental strand, 30986553 - 30986511
Alignment:
Q  462 taactctacaaaatcaaaacacttgttgttgtgttactttgtt 504  Q
    ||||||||| | | |||||||||||||||||||||||||||||    
T  30986553 taactctactagaacaaaacacttgttgttgtgttactttgtt 30986511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 5e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 752 - 959
Target Start/End: Complemental strand, 54545529 - 54545318
Alignment:
Q  752 gaggatcaacaccatataaacttgtcaatattgat----tttgtcgt--catctgttaggttatcattggtgtgaatcttcagcatatccacacttctct 845  Q
    ||||||| ||||||||||||||||||| | |||||    |||||| |  |||||| |||||||||||| |||||||||||| |||||||||| ||||  |    
T  54545529 gaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttctgcatatccacgcttcctt 54545430  T
Q  846 cttccactacttcttaaataaaatgatattaaacgcctatttgcttcgtccttgaatgaaaaaagttggatttcatgcaatgtgcaagacactttaactt 945  Q
    | || |||||||||  |||||||||||||| ||||||||| || ||||||||||||||  |||||||| ||| | ||||||||||||  |||| | |||     
T  54545429 cctctactacttctcgaataaaatgatattgaacgcctatgtgtttcgtccttgaatg--aaaagttgaattccttgcaatgtgcaatgcactctgactg 54545332  T
Q  946 tcacaatacacaat 959  Q
    ||||||||||||||    
T  54545331 tcacaatacacaat 54545318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 802 - 957
Target Start/End: Original strand, 5819264 - 5819417
Alignment:
Q  802 taggttatcattggtgtgaatcttcagcatatccacacttctctcttccactacttcttaaataaaatgatattaaacgcctatttgcttcgtccttgaa 901  Q
    |||||||||||| |||||||||||  |||||||||| |||| ||| ||||||||||||  || ||||||||||| ||||||||| |||||||||||||||    
T  5819264 taggttatcattagtgtgaatcttttgcatatccacgcttccctcctccactacttctcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaa 5819363  T
Q  902 tgaaaaaagttggatttcatgcaatgtgcaagacactttaactttcacaatacaca 957  Q
    ||  ||||| |||||| | ||||||||||||| |||| | ||| ||||||||||||    
T  5819364 tg--aaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacaca 5819417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 73; Significance: 8e-33; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 806 - 957
Target Start/End: Original strand, 28028 - 28177
Alignment:
Q  806 ttatcattggtgtgaatcttcagcatatccacacttctctcttccactacttcttaaataaaatgatattaaacgcctatttgcttcgtccttgaatgaa 905  Q
    ||||||||||||||||||||| |||| |||||||||| ||| ||||||||||||  || ||||||||||| ||||||||| || ||||||||||||||      
T  28028 ttatcattggtgtgaatcttctgcatgtccacacttccctcctccactacttctcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatg-- 28125  T
Q  906 aaaagttggatttcatgcaatgtgcaagacactttaactttcacaatacaca 957  Q
    ||||| |||||| | ||||||||||||| |||| | ||| ||||||||||||    
T  28126 aaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacaca 28177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 752 - 957
Target Start/End: Complemental strand, 829863 - 829654
Alignment:
Q  752 gaggatcaacaccatataaacttgtcaatattgat----tttgtcgt--catctgttaggttatcattggtgtgaatcttcagcatatccacacttctct 845  Q
    ||||||| ||||||||||||||||||| | |||||    |||||| |  |||||| |||||||||||| ||||||||||||  ||||||||| ||||  |    
T  829863 gaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttctacatatccacgcttcctt 829764  T
Q  846 cttccactacttcttaaataaaatgatattaaacgcctatttgcttcgtccttgaatgaaaaaagttggatttcatgcaatgtgcaagacactttaactt 945  Q
    | || |||||||||  || ||||||||||| ||||||||| || ||||||||||||||  ||||| |||||| | ||||||||||||| |||| | |||     
T  829763 cctctactacttctcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatg--aaaagctggattccttgcaatgtgcaaggcactctgactg 829666  T
Q  946 tcacaatacaca 957  Q
    ||||||||||||    
T  829665 tcacaatacaca 829654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 795 - 907
Target Start/End: Complemental strand, 28715406 - 28715296
Alignment:
Q  795 catctgttaggttatcattggtgtgaatcttcagcatatccacacttctctcttccactacttcttaaataaaatgatattaaacgcctatttgcttcgt 894  Q
    |||||| ||||||||||||||||||||||||  |||||| |||||| | ||| ||||| ||| ||  || ||||||||||| ||| ||||| |||||| |    
T  28715406 catctgctaggttatcattggtgtgaatcttatgcatattcacactcc-ctcctccac-actactcgaacaaaatgatattgaacacctatgtgcttcat 28715309  T
Q  895 ccttgaatgaaaa 907  Q
    ||||||| |||||    
T  28715308 ccttgaacgaaaa 28715296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 795 - 955
Target Start/End: Original strand, 13840912 - 13841068
Alignment:
Q  795 catctgttaggttatcattggtgtgaatcttcagcatatccacacttctctcttccactacttcttaaataaaatgatattaaacgcctatttgcttcgt 894  Q
    |||| |||||||||||| | || ||||||||| ||| ||||| |||||  || || ||||||| || || ||||||||||| ||| | ||| || || ||    
T  13840912 catccgttaggttatcacttgtctgaatcttctgcacatccatacttccttcgtcgactactt-ttgaacaaaatgatattgaacacttatgtgttttgt 13841010  T
Q  895 ccttgaatgaaaaaagttggatttcatgcaatgtgcaagacactttaactttcacaataca 955  Q
    ||||||||||||||   || ||||| ||||||||| ||| || | ||| | ||||||||||    
T  13841011 ccttgaatgaaaaa---tgaatttcttgcaatgtgaaaggcattctaattgtcacaataca 13841068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 7e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 795 - 957
Target Start/End: Original strand, 30946165 - 30946325
Alignment:
Q  795 catctgttaggttatcattggtgtgaatcttcagcatatccacacttctctcttccactacttcttaaataaaatgatattaaacgcctatttgcttcgt 894  Q
    |||||| ||| ||||||||||||||||||||| |||| |||||||||| ||| || ||||||||   || ||||||||||| ||||||||| || |||||    
T  30946165 catctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgt 30946264  T
Q  895 ccttgaatgaaaaaagttggatttcatgcaatgtgcaagacactttaactttcacaatacaca 957  Q
    |||||||||  ||||| |||||| | ||||||||||||| |||| | ||| ||||||||||||    
T  30946265 ccttgaatg--aaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacaca 30946325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 795 - 957
Target Start/End: Original strand, 48697803 - 48697963
Alignment:
Q  795 catctgttaggttatcattggtgtgaatcttcagcatatccacacttctctcttccactacttcttaaataaaatgatattaaacgcctatttgcttcgt 894  Q
    |||||| ||| ||||||||||||||||||||| |||| |||||||||| ||| || ||||||||   || ||||||||||| ||||||||| || |||||    
T  48697803 catctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgt 48697902  T
Q  895 ccttgaatgaaaaaagttggatttcatgcaatgtgcaagacactttaactttcacaatacaca 957  Q
    |||||||||  ||||| |||||| | |||||| |||||| |||| | ||| ||||||||||||    
T  48697903 ccttgaatg--aaaagctggattccttgcaatatgcaaggcactctgactgtcacaatacaca 48697963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 755 - 957
Target Start/End: Complemental strand, 42270284 - 42270078
Alignment:
Q  755 gatcaacaccatataaacttgtcaatattgat----tttgtcgt--catctgttaggttatcattggtgtgaatcttcagcatatccacacttctctctt 848  Q
    |||| ||||||||||||||||||| | |||||    |||||| |  |||||| |||||||||||| |||||||||||| |||||||||| ||||  || |    
T  42270284 gatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttccttcct 42270185  T
Q  849 ccactacttcttaaataaaatgatattaaacgcctatttgcttcgtccttgaatgaaaaaagttggatttcatgcaatgtgcaagacactttaactttca 948  Q
    | ||||||||   || ||||||||||| ||||||||| || ||||||||||||||  ||||| |||||| | |||||| |||||| |||| | ||| |||    
T  42270184 ctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatg--aaaagctggattccttgcaatatgcaaggcactctgactgtca 42270087  T
Q  949 caatacaca 957  Q
    |||||||||    
T  42270086 caatacaca 42270078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 795 - 957
Target Start/End: Complemental strand, 41722745 - 41722585
Alignment:
Q  795 catctgttaggttatcattggtgtgaatcttcagcatatccacacttctctcttccactacttcttaaataaaatgatattaaacgcctatttgcttcgt 894  Q
    |||||| ||| ||||||||||||||||||||| |||| |||||||||| ||| || ||||||||   || ||||||||||| ||||||||| || |||||    
T  41722745 catctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgt 41722646  T
Q  895 ccttgaatgaaaaaagttggatttcatgcaatgtgcaagacactttaactttcacaatacaca 957  Q
    |||||||||  ||||| |||||| | |||||| |||||| |||| | ||| ||||||||||||    
T  41722645 ccttgaatg--aaaagctggattccttgcaatatgcaaggcactctgactgtcacaatacaca 41722585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 802 - 907
Target Start/End: Complemental strand, 34359517 - 34359412
Alignment:
Q  802 taggttatcattggtgtgaatcttcagcatatccacacttctctcttccactacttcttaaataaaatgatattaaacgcctatttgcttcgtccttgaa 901  Q
    ||||||||||||||||||||||||  |||||||||| |||| ||| ||||||||||||  || ||||||||||| |||||| || |||||||||||||||    
T  34359517 taggttatcattggtgtgaatcttttgcatatccacgcttccctcctccactacttctcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaa 34359418  T
Q  902 tgaaaa 907  Q
    ||||||    
T  34359417 tgaaaa 34359412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 7e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 755 - 957
Target Start/End: Original strand, 9440027 - 9440233
Alignment:
Q  755 gatcaacaccatataaacttgtcaatattgat----tttgtcgt--catctgttaggttatcattggtgtgaatcttcagcatatccacacttctctctt 848  Q
    |||| ||||||||||||||||||| | |||||    |||||| |  |||||| |||||||||||| |||||||||||| |||||||||| ||||  || |    
T  9440027 gatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttccttcct 9440126  T
Q  849 ccactacttcttaaataaaatgatattaaacgcctatttgcttcgtccttgaatgaaaaaagttggatttcatgcaatgtgcaagacactttaactttca 948  Q
    | ||||||||   || ||||||||||| || |||||| || ||||||||||||||  ||||| |||||| | |||||| |||||| |||| | ||| |||    
T  9440127 ctactacttcgcgaacaaaatgatattgaatgcctatgtgtttcgtccttgaatg--aaaagctggattccttgcaatatgcaaggcactctgactgtca 9440224  T
Q  949 caatacaca 957  Q
    |||||||||    
T  9440225 caatacaca 9440233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 795 - 874
Target Start/End: Original strand, 2324096 - 2324175
Alignment:
Q  795 catctgttaggttatcattggtgtgaatcttcagcatatccacacttctctcttccactacttcttaaataaaatgatat 874  Q
    |||||| |||| ||||||||||||| |||||| ||||||||||||||| ||| |  |||||||||  || ||||||||||    
T  2324096 catctgctagggtatcattggtgtggatcttctgcatatccacacttccctcctttactacttctcgaacaaaatgatat 2324175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 795 - 955
Target Start/End: Complemental strand, 22510252 - 22510094
Alignment:
Q  795 catctgttaggttatcattggtgtgaatcttcagcatatccacacttctctcttccactacttcttaaataaaatgatattaaacgcctatttgcttcgt 894  Q
    |||||| | |||||||||  || ||||||||| |||||||||||  || ||| ||||| |||  |  || |||||| |||| ||||||| | ||| ||||    
T  22510252 catctgcttggttatcatcagtttgaatcttcggcatatccacatgtccctcctccacaactaatacaaaaaaatggtattgaacgcctttgtgcatcgt 22510153  T
Q  895 ccttgaatgaaaaaagttggatttcatgcaatgtgcaagacactttaactttcacaataca 955  Q
    | | ||||  | ||||||||||| | || ||||||||||||||| | ||| ||||||||||    
T  22510152 cttggaat--acaaagttggattgcttgaaatgtgcaagacactctgactatcacaataca 22510094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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