View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12081_low_3 (Length: 781)
Name: NF12081_low_3
Description: NF12081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12081_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 745; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 745; E-Value: 0
Query Start/End: Original strand, 8 - 776
Target Start/End: Complemental strand, 34896573 - 34895805
Alignment:
| Q |
8 |
tgaaatgaacacttacatcgcaaaaaattgatcatgcagggaggagtgggtttgagaatcagagtctacgataggataatgtgctttgtgaattgtcact |
107 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34896573 |
tgaaatgaacacttacatcgcaaaaaaatgatcatgcagggaggagtgggtttgagaatcagagtctacgataggataatgtgctttgtgaattgtcact |
34896474 |
T |
|
| Q |
108 |
tggcagcacatttggaagctgttaatcggcgaaacgctgattttgatcacatttataagaatatggtcttcagccgatcatccactctacttaatactgc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34896473 |
tggcagcacatttggaagctgttaatcggcgaaacgctgattttgatcacatttataagaatatggtcttcagccgatcatccactctacttaatactgc |
34896374 |
T |
|
| Q |
208 |
agctggtatgctaccatacctgttcttgtattgctctcttgccttctccacatatttattttggctactttactcttgtggcttgccattcatcctgtct |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34896373 |
agctggtatgctaccatacctgttcttgtattgctctcttgccttctccacatatttattttggctactttactcttgtggcttgccattcatcctgtct |
34896274 |
T |
|
| Q |
308 |
gttgcagctggtgtctctacttccgctcacatgcttcgcagtacaaatgtgagtccatccttaattagtttcttacagcttttaactatctccttgcctc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34896273 |
gttgcagctggtgtctctacttccgctcacatgcttcgcagtacaaatgtgagtccatccttaattagtttcttacagcttttaactatctccttgcctc |
34896174 |
T |
|
| Q |
408 |
tccatcaatatgattaccaaacagttacatggtcttcattgtatcataggctatgggttccagctcagaagatgcaaaacctgagttatctgatgcagat |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34896173 |
tccatcaatatgattaccaaacagttacatggtcttcattgtatcataggctatgggttccagctcagaagatgcaaaacctgagttatctgatgcagat |
34896074 |
T |
|
| Q |
508 |
atggtggtattttttggtgatttcaactatcggctttttggtatatcatatgatgaagccagggactttgtttctcaaagatgctttgattggcttagag |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34896073 |
atggtggtattttttggtgatttcaactatcggctttttggtatatcatatgatgaagccagggactttgtttctcaaagatgctttgattggcttagag |
34895974 |
T |
|
| Q |
608 |
aaaaggaccagctcagggaggagatgaaaaacggaaaagttttccagggaatgcgcgaggcagtaatcaaatttcctccatcagataagtttgagaggca |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
34895973 |
aaaaggaccagctcagggaggagatgaaaaacggaaaagttttccagggaatgcgcgaggcagtaatcaaatttcctccaacatataagtttgagaggca |
34895874 |
T |
|
| Q |
708 |
tctaccatgcttaggaggtaaataaattagcatctcaatgaacatggcagtttcaattttgccttctgt |
776 |
Q |
| |
|
||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34895873 |
tctaccaggtttaggaggtaaataaattagcaactcaatgaacatggcagtttcaattttgccttctgt |
34895805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 486 - 620
Target Start/End: Original strand, 34957302 - 34957436
Alignment:
| Q |
486 |
acctgagttatctgatgcagatatggtggtattttttggtgatttcaactatcggctttttggtatatcatatgatgaagccagggactttgtttctcaa |
585 |
Q |
| |
|
||||||||||||||| ||||| ||| | |||||| |||||||||| |||||||| ||| || || |||||||||||||| || || |||||||||||| |
|
|
| T |
34957302 |
acctgagttatctgaggcagacatgattgtatttcttggtgatttgaactatcgtcttgatgacatttcatatgatgaagcaagagattttgtttctcaa |
34957401 |
T |
|
| Q |
586 |
agatgctttgattggcttagagaaaaggaccagct |
620 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
34957402 |
agatgctttgattggcttagagaaagggatcagct |
34957436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University