View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12081_low_4 (Length: 577)

Name: NF12081_low_4
Description: NF12081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12081_low_4
NF12081_low_4
[»] chr6 (15 HSPs)
chr6 (225-436)||(17951955-17952166)
chr6 (225-429)||(35175783-35175987)
chr6 (229-394)||(34343847-34344004)
chr6 (484-573)||(17951818-17951907)
chr6 (484-573)||(34344065-34344154)
chr6 (486-573)||(35175639-35175726)
chr6 (225-349)||(34345291-34345415)
chr6 (225-330)||(17950561-17950666)
chr6 (267-316)||(24662522-24662571)
chr6 (226-349)||(4289419-4289542)
chr6 (267-362)||(13613569-13613664)
chr6 (223-314)||(4641353-4641444)
chr6 (240-330)||(3018451-3018541)
chr6 (366-427)||(10568561-10568622)
chr6 (222-330)||(29077325-29077433)
[»] chr4 (41 HSPs)
chr4 (225-436)||(5484540-5484751)
chr4 (224-436)||(43779780-43779992)
chr4 (225-436)||(39921494-39921705)
chr4 (228-436)||(32652102-32652310)
chr4 (225-436)||(39083639-39083850)
chr4 (230-429)||(39189387-39189586)
chr4 (234-436)||(44994200-44994402)
chr4 (219-436)||(42880674-42880885)
chr4 (484-573)||(32652358-32652447)
chr4 (484-573)||(43779643-43779732)
chr4 (484-573)||(44994063-44994152)
chr4 (484-573)||(5484799-5484888)
chr4 (484-573)||(39083898-39083987)
chr4 (484-573)||(39189641-39189730)
chr4 (484-573)||(39921753-39921842)
chr4 (484-573)||(42880537-42880626)
chr4 (225-330)||(5486038-5486143)
chr4 (233-348)||(6999268-6999383)
chr4 (265-387)||(13450943-13451064)
chr4 (268-349)||(15450383-15450464)
chr4 (264-348)||(25995080-25995164)
chr4 (226-349)||(32653598-32653721)
chr4 (225-330)||(39922993-39923098)
chr4 (267-348)||(13450272-13450353)
chr4 (225-330)||(44558512-44558617)
chr4 (363-427)||(11255841-11255905)
chr4 (223-314)||(47941809-47941900)
chr4 (233-330)||(42879283-42879380)
chr4 (233-330)||(44992816-44992913)
chr4 (366-427)||(51012087-51012148)
chr4 (225-348)||(35996063-35996186)
chr4 (363-425)||(4519535-4519597)
chr4 (224-338)||(35997745-35997859)
chr4 (225-298)||(2350558-2350631)
chr4 (233-330)||(2828397-2828494)
chr4 (225-330)||(10372725-10372830)
chr4 (233-330)||(39085138-39085235)
chr4 (233-338)||(44792942-44793047)
chr4 (366-422)||(2827566-2827622)
chr4 (366-422)||(35996225-35996281)
chr4 (366-422)||(51041837-51041893)
[»] chr7 (46 HSPs)
chr7 (224-436)||(4322485-4322697)
chr7 (225-436)||(45463670-45463881)
chr7 (224-436)||(48303562-48303774)
chr7 (225-436)||(34690995-34691206)
chr7 (484-573)||(48303425-48303514)
chr7 (484-573)||(34691254-34691343)
chr7 (484-573)||(45463929-45464018)
chr7 (484-573)||(4322351-4322437)
chr7 (230-307)||(30109708-30109785)
chr7 (240-348)||(34785080-34785188)
chr7 (267-349)||(34692715-34692797)
chr7 (167-223)||(21026961-21027017)
chr7 (265-349)||(48302191-48302275)
chr7 (224-330)||(30108564-30108670)
chr7 (233-330)||(46810713-46810810)
chr7 (171-223)||(28172241-28172293)
chr7 (288-359)||(29996504-29996575)
chr7 (366-425)||(38613625-38613684)
chr7 (225-348)||(46996703-46996826)
chr7 (225-316)||(47341719-47341810)
chr7 (290-348)||(11682846-11682904)
chr7 (222-316)||(38613514-38613608)
chr7 (264-317)||(48704248-48704302)
chr7 (233-278)||(23955323-23955368)
chr7 (233-330)||(36762666-36762763)
chr7 (186-223)||(40346071-40346108)
chr7 (223-314)||(8423316-8423407)
chr7 (288-359)||(20478105-20478176)
chr7 (366-425)||(23953967-23954026)
chr7 (233-348)||(33038798-33038913)
chr7 (363-422)||(47341588-47341647)
chr7 (288-361)||(56393-56466)
chr7 (366-427)||(1546449-1546510)
chr7 (233-330)||(4321046-4321143)
chr7 (233-338)||(8421424-8421529)
chr7 (233-338)||(35342433-35342538)
chr7 (225-314)||(35344325-35344414)
chr7 (233-330)||(45465170-45465267)
chr7 (366-427)||(46439431-46439492)
chr7 (233-330)||(46994668-46994765)
chr7 (322-362)||(1546384-1546424)
chr7 (374-426)||(2492496-2492548)
chr7 (233-361)||(27955378-27955506)
chr7 (363-427)||(30940326-30940390)
chr7 (367-423)||(35693275-35693331)
chr7 (366-422)||(40784508-40784564)
[»] chr2 (29 HSPs)
chr2 (224-436)||(28246662-28246874)
chr2 (230-436)||(11022926-11023131)
chr2 (220-429)||(38148490-38148700)
chr2 (36-188)||(31638682-31638834)
chr2 (484-573)||(11022789-11022878)
chr2 (484-573)||(38148755-38148844)
chr2 (484-573)||(28246922-28247011)
chr2 (233-427)||(11315258-11315451)
chr2 (101-223)||(19271242-19271366)
chr2 (230-314)||(39561-39645)
chr2 (261-345)||(38149986-38150069)
chr2 (235-362)||(39664755-39664882)
chr2 (233-330)||(28248161-28248258)
chr2 (290-362)||(17946159-17946231)
chr2 (288-362)||(7744106-7744180)
chr2 (233-314)||(41144-41225)
chr2 (233-330)||(11021541-11021638)
chr2 (225-330)||(37417273-37417378)
chr2 (230-330)||(25619665-25619765)
chr2 (289-359)||(37020572-37020642)
chr2 (366-423)||(6797669-6797726)
chr2 (366-427)||(10716804-10716865)
chr2 (366-427)||(14389005-14389066)
chr2 (225-314)||(15372499-15372588)
chr2 (366-427)||(17946256-17946317)
chr2 (363-416)||(37417432-37417485)
chr2 (225-314)||(41706539-41706628)
chr2 (363-427)||(40560382-40560446)
chr2 (363-427)||(42519126-42519190)
[»] chr1 (31 HSPs)
chr1 (224-436)||(5783363-5783575)
chr1 (484-573)||(5783623-5783712)
chr1 (235-362)||(34778125-34778252)
chr1 (225-348)||(42134482-42134605)
chr1 (288-359)||(46583546-46583617)
chr1 (289-361)||(33602632-33602704)
chr1 (240-316)||(34041828-34041904)
chr1 (167-223)||(38586157-38586213)
chr1 (363-422)||(42134641-42134700)
chr1 (224-330)||(18183962-18184068)
chr1 (366-427)||(2869741-2869802)
chr1 (366-427)||(26225455-26225516)
chr1 (366-427)||(34778040-34778101)
chr1 (235-359)||(4855956-4856080)
chr1 (363-427)||(15104600-15104664)
chr1 (366-426)||(18183846-18183906)
chr1 (363-427)||(27087441-27087505)
chr1 (288-359)||(9121658-9121729)
chr1 (363-422)||(45380890-45380949)
chr1 (224-330)||(5784853-5784959)
chr1 (147-220)||(26765376-26765450)
chr1 (224-298)||(27940607-27940681)
chr1 (224-330)||(33679258-33679364)
chr1 (366-427)||(4855868-4855929)
chr1 (233-330)||(11152553-11152650)
chr1 (233-338)||(27952478-27952583)
chr1 (233-330)||(31803686-31803783)
chr1 (225-298)||(33685299-33685372)
chr1 (367-427)||(3013371-3013431)
chr1 (366-422)||(46638713-46638769)
chr1 (290-362)||(51121970-51122042)
[»] chr8 (24 HSPs)
chr8 (224-436)||(40020548-40020760)
chr8 (231-436)||(28433629-28433834)
chr8 (484-573)||(28433491-28433580)
chr8 (484-573)||(40020411-40020500)
chr8 (225-349)||(23811532-23811656)
chr8 (225-330)||(32822361-32822466)
chr8 (235-357)||(27691164-27691286)
chr8 (233-349)||(9184391-9184507)
chr8 (363-427)||(13108258-13108322)
chr8 (363-427)||(38547386-38547450)
chr8 (223-314)||(31201178-31201269)
chr8 (225-348)||(42897775-42897898)
chr8 (366-427)||(5036611-5036672)
chr8 (363-427)||(8609709-8609773)
chr8 (248-348)||(11031452-11031552)
chr8 (297-349)||(28432293-28432345)
chr8 (363-422)||(42897680-42897739)
chr8 (264-362)||(8609794-8609892)
chr8 (368-422)||(8654663-8654717)
chr8 (288-362)||(13108343-13108417)
chr8 (288-362)||(38547291-38547365)
chr8 (377-427)||(42941947-42941997)
chr8 (233-330)||(31823462-31823559)
chr8 (233-330)||(40019164-40019261)
[»] chr3 (32 HSPs)
chr3 (225-436)||(41944576-41944785)
chr3 (484-573)||(41944833-41944922)
chr3 (264-348)||(30501156-30501240)
chr3 (233-345)||(40963369-40963481)
chr3 (225-349)||(41946066-41946190)
chr3 (288-359)||(44794270-44794341)
chr3 (288-359)||(3152228-3152299)
chr3 (222-317)||(48635372-48635467)
chr3 (220-330)||(23774147-23774257)
chr3 (363-425)||(31887355-31887417)
chr3 (363-427)||(2226074-2226138)
chr3 (225-361)||(40508899-40509035)
chr3 (288-359)||(2660275-2660346)
chr3 (225-348)||(48633877-48634000)
chr3 (366-427)||(7884795-7884856)
chr3 (365-422)||(23888678-23888735)
chr3 (233-330)||(45897058-45897155)
chr3 (223-316)||(51454283-51454376)
chr3 (366-427)||(53190681-53190742)
chr3 (363-427)||(30599839-30599903)
chr3 (374-426)||(33113083-33113135)
chr3 (225-348)||(31887453-31887576)
chr3 (235-362)||(53190766-53190893)
chr3 (369-427)||(35905634-35905692)
chr3 (369-427)||(54898601-54898659)
chr3 (366-427)||(17515472-17515533)
chr3 (366-427)||(23293091-23293152)
chr3 (233-330)||(23887206-23887303)
chr3 (233-330)||(33111849-33111946)
chr3 (225-330)||(33113199-33113304)
chr3 (366-427)||(41977911-41977972)
chr3 (374-422)||(48634051-48634099)
[»] chr5 (27 HSPs)
chr5 (225-436)||(42620676-42620887)
chr5 (484-573)||(42620539-42620628)
chr5 (233-349)||(1344781-1344897)
chr5 (225-330)||(38596868-38596973)
chr5 (233-330)||(32089911-32090008)
chr5 (223-316)||(43318093-43318186)
chr5 (363-427)||(17574476-17574540)
chr5 (268-349)||(1343264-1343345)
chr5 (366-427)||(7268004-7268065)
chr5 (233-330)||(18726573-18726670)
chr5 (233-330)||(33257746-33257843)
chr5 (240-317)||(38176647-38176724)
chr5 (240-317)||(38203871-38203948)
chr5 (233-317)||(40330514-40330598)
chr5 (235-362)||(17574328-17574455)
chr5 (363-422)||(18728508-18728567)
chr5 (288-359)||(29621771-29621842)
chr5 (235-362)||(30468267-30468394)
chr5 (363-422)||(32087673-32087732)
chr5 (225-348)||(35395333-35395456)
chr5 (367-422)||(35395494-35395549)
chr5 (288-359)||(42473597-42473668)
chr5 (267-345)||(6116868-6116946)
chr5 (294-355)||(2854321-2854382)
chr5 (391-427)||(27349333-27349369)
chr5 (222-314)||(32835873-32835965)
chr5 (222-330)||(42619286-42619394)
[»] scaffold0058 (2 HSPs)
scaffold0058 (288-359)||(3357-3428)
scaffold0058 (288-359)||(4529-4600)
[»] scaffold0477 (1 HSPs)
scaffold0477 (223-314)||(6669-6760)
[»] scaffold1454 (1 HSPs)
scaffold1454 (363-427)||(1421-1485)
[»] scaffold0564 (1 HSPs)
scaffold0564 (366-427)||(8422-8483)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 4e-92; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 225 - 436
Target Start/End: Complemental strand, 17952166 - 17951955
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    |||| |||||||||||||||||||||||||| |||| | |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||    
T  17952166 gagtgaaccatcaatttcgtccctgaattttcaggggtcggccaaattcgtccccaaatttaacgaaatatcaaaatagtccctgaatttgtttgacgtc 17952067  T
Q  325 catcaatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatgg 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  17952066 catcaatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaagaaagccacgtgtacagggactaaattgatgg 17951967  T
Q  425 aaaatgcgaaaa 436  Q
    ||||| ||||||    
T  17951966 aaaatacgaaaa 17951955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 225 - 429
Target Start/End: Complemental strand, 35175987 - 35175783
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    |||| ||||||||||||||||| |||||||| |||||| ||||||||||||| || |||| ||||||||||||||||||||||||||||||||||| |||    
T  35175987 gagtgaaccatcaatttcgtccttgaattttcagggatcggccaaattcgtctccaaatttaacgaaatatcaaaatagtccctgaatttgtttgacgtc 35175888  T
Q  325 catcaatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatgg 424  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  35175887 catcaatttcgtccctccgtccaaaaggtctgatagtgtgctgtgttggcttgtacacgtgggaaaaagaaagccacgtgtacagggactaaattgatgg 35175788  T
Q  425 aaaat 429  Q
    |||||    
T  35175787 aaaat 35175783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 229 - 394
Target Start/End: Original strand, 34343847 - 34344004
Alignment:
Q  229 aaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaattt-gtttgatgtccat 327  Q
    |||||||||||||||||| |||||||||| | ||||| |||||| |||| |||||| |||||||||||         ||| ||||| |||||| ||||||    
T  34343847 aaaccatcaatttcgtccttgaatttttaagaattggtcaaatttgtcctccaatttaacgaaatatc---------cctcaattttgtttgacgtccat 34343937  T
Q  328 caatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaagg 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34343938 caatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaagg 34344004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 484 - 573
Target Start/End: Complemental strand, 17951907 - 17951818
Alignment:
Q  484 acccctatgtttcccattaccatacatcctcacatttcatacataacacatcaactaagtccctgtctgttcttcttccctccattttca 573  Q
    |||||| ||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17951907 acccctgtgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccctgtctgttcttcttccctccattttca 17951818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 484 - 573
Target Start/End: Original strand, 34344065 - 34344154
Alignment:
Q  484 acccctatgtttcccattaccatacatcctcacatttcatacataacacatcaactaagtccctgtctgttcttcttccctccattttca 573  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||  |||||||||||||||||||||||    
T  34344065 acccctatgtttcccattaccatacatcctcacatttcatacagaacgcatcaactaagtccctggttgttcttcttccctccattttca 34344154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 486 - 573
Target Start/End: Complemental strand, 35175726 - 35175639
Alignment:
Q  486 ccctatgtttcccattaccatacatcctcacatttcatacataacacatcaactaagtccctgtctgttcttcttccctccattttca 573  Q
    ||||||||||  |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35175726 ccctatgtttgtcattaccatacatcctcatatttcatacagaacacatcaactaagtccctgtctgttcttcttccctccattttca 35175639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 225 - 349
Target Start/End: Complemental strand, 34345415 - 34345291
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    ||||||| |||||| || ||||||||||||  |  ||| | |||||| |||||| ||||| || ||||||||||||||||||||||||||||   ||| |    
T  34345415 gagtaaatcatcaacttggtccctgaatttgcactgatcgaccaaatccgtccctcaatttaatgaaatatcaaaatagtccctgaatttgtaaaatgcc 34345316  T
Q  325 catcaatttcgtccctccgtccaaa 349  Q
      ||||||| |||||||||||||||    
T  34345315 tgtcaattttgtccctccgtccaaa 34345291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 330
Target Start/End: Original strand, 17950561 - 17950666
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    |||| ||||||||||||| |||||||||||||| || | |||||| |||||||| |||||   |||||||||||  || ||||||||||||||  |||||    
T  17950561 gagtgaaccatcaatttcatccctgaatttttacgggtcggccaacttcgtccctcaattatgcgaaatatcaatttaatccctgaatttgttaaatgtc 17950660  T
Q  325 catcaa 330  Q
     |||||    
T  17950661 aatcaa 17950666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 24662522 - 24662571
Alignment:
Q  267 caaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgt 316  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  24662522 caaattcgtcccccaatttaacgaaatatcaaaatagtccatgaatttgt 24662571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 349
Target Start/End: Original strand, 4289419 - 4289542
Alignment:
Q  226 agtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtcc 325  Q
    |||||| |||||| || || |||||||||  |  ||| || |||||||||||| ||||| || |||||||||||||||||||| |||||||   ||| |     
T  4289419 agtaaatcatcaacttggttcctgaatttgcactgatcggtcaaattcgtccctcaatttaatgaaatatcaaaatagtccctaaatttgtaaaatgcct 4289518  T
Q  326 atcaatttcgtccctccgtccaaa 349  Q
     ||||||| |||||||||||||||    
T  4289519 gtcaattttgtccctccgtccaaa 4289542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 362
Target Start/End: Complemental strand, 13613664 - 13613569
Alignment:
Q  267 caaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaaaggtccgttagtg 362  Q
    ||||||||||||  ||||   |||||||||||| ||||||||||||||    || ||||||||| || ||||||||||||||||||||| ||||||    
T  13613664 caaattcgtccctgaattttgcgaaatatcaaattagtccctgaattttacagacgtccatcaaattagtccctccgtccaaaaggtccattagtg 13613569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 314
Target Start/End: Original strand, 4641353 - 4641444
Alignment:
Q  223 tcgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaattt 314  Q
    |||||| |||||||||||| ||||||||||||| | || | ||||||||||||||| |||||    ||||||||||  || |||||||||||    
T  4641353 tcgagtgaaccatcaatttagtccctgaattttcacgggtcggccaaattcgtccctcaattatgtgaaatatcaatttaatccctgaattt 4641444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 330
Target Start/End: Complemental strand, 3018541 - 3018451
Alignment:
Q  240 ttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaa 330  Q
    |||||||||||||||| | |  | |||||| |||||||| |||||   |||||||||||  ||||||||||||||||  || |||||||||    
T  3018541 ttcgtccctgaattttcacgcgtcggccaacttcgtccctcaattatgcgaaatatcaacttagtccctgaatttgtcagacgtccatcaa 3018451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 427
Target Start/End: Original strand, 10568561 - 10568622
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    ||||||| | ||||||||||  || |||| ||||||||||||| ||||||| ||||||||||    
T  10568561 tgtgttgtcatgtacacgtgtcaacaaggcagccacatgtacaaggactaatttgatggaaa 10568622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 330
Target Start/End: Original strand, 29077325 - 29077433
Alignment:
Q  222 atcgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgat 321  Q
    ||||||| ||||||||| |||||||||||||||| | |  | ||||||||| ||||| |||||   |||||| ||||  |  |||||||||||||  ||     
T  29077325 atcgagtgaaccatcaaattcgtccctgaattttcacgcgtcggccaaattagtccctcaattatgcgaaatttcaatttcatccctgaatttgtcagac 29077424  T
Q  322 gtccatcaa 330  Q
    |||||||||    
T  29077425 gtccatcaa 29077433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 172; Significance: 4e-92; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 225 - 436
Target Start/End: Original strand, 5484540 - 5484751
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    |||| ||||||||||||||||| ||||||||||||| | |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||    
T  5484540 gagtgaaccatcaatttcgtccatgaatttttaggggtcggccaaattcgtccccaaatttaacgaaatatcaaaatagtccctgaatttgtttgacgtc 5484639  T
Q  325 catcaatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatgg 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  5484640 catcaatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaagaaagccacgtgtacagggactaaattgatgg 5484739  T
Q  425 aaaatgcgaaaa 436  Q
    ||||| ||||||    
T  5484740 aaaatacgaaaa 5484751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 224 - 436
Target Start/End: Complemental strand, 43779992 - 43779780
Alignment:
Q  224 cgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgt 323  Q
    ||||| |||| ||||||||||||||||||||| |||| | |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||    
T  43779992 cgagtgaaccttcaatttcgtccctgaattttcaggggtcggccaaattcgtccccaaatttaacgaaatatcaaaatagtccctgaatttgtttgacgt 43779893  T
Q  324 ccatcaatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatg 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  43779892 ccatcaatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaagaaagccacgtgtacagggactaaattgatg 43779793  T
Q  424 gaaaatgcgaaaa 436  Q
    |||||| ||||||    
T  43779792 gaaaatacgaaaa 43779780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 225 - 436
Target Start/End: Original strand, 39921494 - 39921705
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    |||| |||||||||||||||||||||||||| |||| | |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||    
T  39921494 gagtgaaccatcaatttcgtccctgaattttcaggggtcggccaaattcgtccccaaatttaacgaaatatcaaaatagtccctgaatttgtttgacgtc 39921593  T
Q  325 catcaatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatgg 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||    
T  39921594 catcaatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacatgtgggaaaaagaaagccacgtgtacagggactaaattgatgg 39921693  T
Q  425 aaaatgcgaaaa 436  Q
    ||||| ||||||    
T  39921694 aaaatacgaaaa 39921705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 228 - 436
Target Start/End: Original strand, 32652102 - 32652310
Alignment:
Q  228 taaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccat 327  Q
    |||||||||||||||||| ||||||||| |||| | ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||    
T  32652102 taaaccatcaatttcgtcactgaattttcagggttcggccaaattcgtcccccaatttaacgaaatatcaaaatagtccttgaatttgtttgacgtccat 32652201  T
Q  328 caatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  32652202 caatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttatacacgtgggaaaaaggaagccacgtgtacatggactaaattgatggaaa 32652301  T
Q  428 atgcgaaaa 436  Q
    || ||||||    
T  32652302 atacgaaaa 32652310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 225 - 436
Target Start/End: Original strand, 39083639 - 39083850
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    |||| |||||||||||||||||||||||||| |||| | |||||||||||||||  |||| ||||||||||||||||||||||||||||||||||| |||    
T  39083639 gagtgaaccatcaatttcgtccctgaattttcaggggtcggccaaattcgtccctaaatttaacgaaatatcaaaatagtccctgaatttgtttgacgtc 39083738  T
Q  325 catcaatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatgg 424  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  39083739 catcaatttcgtccctccgtccaaaaggtccgttagtgtgttgtgttggcttgtacacgtgggaaaaagaaagccacgtgtacagggactaaattgatgg 39083838  T
Q  425 aaaatgcgaaaa 436  Q
    ||||| ||||||    
T  39083839 aaaatacgaaaa 39083850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 230 - 429
Target Start/End: Original strand, 39189387 - 39189586
Alignment:
Q  230 aaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatca 329  Q
    |||||||||||||||||||||||||| |||| | |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  39189387 aaccatcaatttcgtccctgaattttcaggggtcggccaaattcgtccccaaatttaacgaaatatcaaaatagtccctgaatttgtttgacgtccatca 39189486  T
Q  330 atttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaaat 429  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  39189487 atttcgtccctccgtccaaaaggtccgttaatgtgttgtgttggcttgtacacgtgggaaaaagaaagccacgtgtacagggactaaattgatggaaaat 39189586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 234 - 436
Target Start/End: Complemental strand, 44994402 - 44994200
Alignment:
Q  234 atcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaattt 333  Q
    ||||||||| ||||| |||||| |||| | |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44994402 atcaatttcatccctaaattttcaggggtcggccaaattcgtccccaaatttaacgaaatatcaaaatagtccctgaatttgtttgacgtccatcaattt 44994303  T
Q  334 cgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaaatgcga 433  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||    
T  44994302 cgtccctccatccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaagaaagtcatgtgtacagggactaaattgatggaaaatacga 44994203  T
Q  434 aaa 436  Q
    |||    
T  44994202 aaa 44994200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 219 - 436
Target Start/End: Complemental strand, 42880885 - 42880674
Alignment:
Q  219 tagatcgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgttt 318  Q
    ||||| |||| |||||||||||| ||||||||||||| |||| | |||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  42880885 tagatagagtgaaccatcaattttgtccctgaattttcaggggtcggccaaattcgtccccaaatttaacgaaatatcaaaatagtccctgaatttgttt 42880786  T
Q  319 gatgtccatcaatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaat 418  Q
    || |||||||||||||||||||      |||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||    
T  42880785 gacgtccatcaatttcgtccct------aaaaggtccgttagtgtgctgtgttgacttgtacacgtgggaaaaagaaagccacgtgtacagggactaaat 42880692  T
Q  419 tgatggaaaatgcgaaaa 436  Q
    ||||||||||| ||||||    
T  42880691 tgatggaaaatacgaaaa 42880674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 484 - 573
Target Start/End: Original strand, 32652358 - 32652447
Alignment:
Q  484 acccctatgtttcccattaccatacatcctcacatttcatacataacacatcaactaagtccctgtctgttcttcttccctccattttca 573  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32652358 acccctatgtttcccattaccatacatcctcacatttcatacagaacacatcaactaagtccctgtctgttcttcttccctccattttca 32652447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 484 - 573
Target Start/End: Complemental strand, 43779732 - 43779643
Alignment:
Q  484 acccctatgtttcccattaccatacatcctcacatttcatacataacacatcaactaagtccctgtctgttcttcttccctccattttca 573  Q
    |||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43779732 acccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccctgtctgttcttcttccctccattttca 43779643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 484 - 573
Target Start/End: Complemental strand, 44994152 - 44994063
Alignment:
Q  484 acccctatgtttcccattaccatacatcctcacatttcatacataacacatcaactaagtccctgtctgttcttcttccctccattttca 573  Q
    |||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44994152 acccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccctgtctgttcttcttccctccattttca 44994063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 484 - 573
Target Start/End: Original strand, 5484799 - 5484888
Alignment:
Q  484 acccctatgtttcccattaccatacatcctcacatttcatacataacacatcaactaagtccctgtctgttcttcttccctccattttca 573  Q
    |||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  5484799 acccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccatgtctgttcttcttccctccattttca 5484888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 484 - 573
Target Start/End: Original strand, 39083898 - 39083987
Alignment:
Q  484 acccctatgtttcccattaccatacatcctcacatttcatacataacacatcaactaagtccctgtctgttcttcttccctccattttca 573  Q
    |||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  39083898 acccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccctgtctgtttttcttccctccattttca 39083987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 484 - 573
Target Start/End: Original strand, 39189641 - 39189730
Alignment:
Q  484 acccctatgtttcccattaccatacatcctcacatttcatacataacacatcaactaagtccctgtctgttcttcttccctccattttca 573  Q
    |||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  39189641 acccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccctgtctgttcttcttccatccattttca 39189730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 484 - 573
Target Start/End: Original strand, 39921753 - 39921842
Alignment:
Q  484 acccctatgtttcccattaccatacatcctcacatttcatacataacacatcaactaagtccctgtctgttcttcttccctccattttca 573  Q
    |||||| ||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39921753 acccctgtgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccctgtctgttcttcttccctccattttca 39921842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 484 - 573
Target Start/End: Complemental strand, 42880626 - 42880537
Alignment:
Q  484 acccctatgtttcccattaccatacatcctcacatttcatacataacacatcaactaagtccctgtctgttcttcttccctccattttca 573  Q
    |||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  42880626 acccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccctttctgttcttcttccctccattttca 42880537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 225 - 330
Target Start/End: Complemental strand, 5486143 - 5486038
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    |||| ||||||||||||||||||||||||||||||| | |||||||||| ||||  |||| ||||||||||||||||||||||||||||||||  |||||    
T  5486143 gagtgaaccatcaatttcgtccctgaatttttaggggtcggccaaattcatccctaaatttaacgaaatatcaaaatagtccctgaatttgttaaatgtc 5486044  T
Q  325 catcaa 330  Q
     |||||    
T  5486043 aatcaa 5486038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 233 - 348
Target Start/End: Complemental strand, 6999383 - 6999268
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatt 332  Q
    |||||||||||||| |||||||  | | || ||||||||||||||  ||||| || ||||||||||||||||| ||||||||||   || || |||||||    
T  6999383 catcaatttcgtccttgaatttgcacgaatcggccaaattcgtccttcaatttaatgaaatatcaaaatagtctctgaatttgtaaaatatcaatcaatt 6999284  T
Q  333 tcgtccctccgtccaa 348  Q
    | ||||||||||||||    
T  6999283 tagtccctccgtccaa 6999268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 265 - 387
Target Start/End: Complemental strand, 13451064 - 13450943
Alignment:
Q  265 gccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaaaggtccgttagtgtg 364  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||| |  || |||||||||  | |||||||| |||||| | || ||||   ||    
T  13451064 gccaaattcgtcccccaatttaacgaaatatcaaaatagtccttgaatttatcagacgtccatcaaaatggtccctccatccaaatgctctgtta-catg 13450966  T
Q  365 ctgtgttggcttgtacacgtggg 387  Q
     ||||||| ||||||||||||||    
T  13450965 ttgtgttgtcttgtacacgtggg 13450943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 268 - 349
Target Start/End: Complemental strand, 15450464 - 15450383
Alignment:
Q  268 aaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaa 349  Q
    ||||| ||||| ||||| |||||||||||||||||||||||||||||||   |||| | ||||||| |||||||||||||||    
T  15450464 aaatttgtccctcaatttaacgaaatatcaaaatagtccctgaatttgtaaaatgttcgtcaattttgtccctccgtccaaa 15450383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 348
Target Start/End: Complemental strand, 25995164 - 25995080
Alignment:
Q  264 ggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaa 348  Q
    |||||||||  |||||||||| ||||||||||||||||||| |||||||||||   ||||| ||||||||  |||||||||||||    
T  25995164 ggccaaatttatcccccaatttaacgaaatatcaaaatagttcctgaatttgtaaaatgtcaatcaatttattccctccgtccaa 25995080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 226 - 349
Target Start/End: Complemental strand, 32653721 - 32653598
Alignment:
Q  226 agtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtcc 325  Q
    |||||| |||||| || || |||||||||  |  ||| || |||||||||||  ||||| ||||||||||||||||||| |||||||||||   |||| |    
T  32653721 agtaaatcatcaacttggttcctgaatttgcactgatcggtcaaattcgtccttcaatttaacgaaatatcaaaatagtgcctgaatttgtaaaatgttc 32653622  T
Q  326 atcaatttcgtccctccgtccaaa 349  Q
     ||||||| |||||||||||||||    
T  32653621 gtcaattttgtccctccgtccaaa 32653598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 330
Target Start/End: Complemental strand, 39923098 - 39922993
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    |||| ||||||||||||||||||||||||||||  | | |||||| |||||||| |||||   |||||||||||  || ||||||||||||||  |||||    
T  39923098 gagtgaaccatcaatttcgtccctgaatttttacaggtcggccaacttcgtccctcaattatgcgaaatatcaatttaatccctgaatttgttaaatgtc 39922999  T
Q  325 catcaa 330  Q
     |||||    
T  39922998 aatcaa 39922993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 348
Target Start/End: Complemental strand, 13450353 - 13450272
Alignment:
Q  267 caaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaa 348  Q
    |||||| ||||||||||| ||| |||||| ||||||||||||||||||||    |||| |||||||| || |||||||||||    
T  13450353 caaatttgtcccccaatttaacaaaatatgaaaatagtccctgaatttgtaaagtgtcaatcaatttagtacctccgtccaa 13450272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 330
Target Start/End: Complemental strand, 44558617 - 44558512
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    |||| ||||||||| ||||||| |||||||| | || | |||||||||| |||| |||||   |||||||||||  ||||||||||||||||  || |||    
T  44558617 gagtgaaccatcaacttcgtccttgaattttcacgggtcggccaaattcatccctcaattatgcgaaatatcaacttagtccctgaatttgtcagacgtc 44558518  T
Q  325 catcaa 330  Q
    ||||||    
T  44558517 catcaa 44558512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 11255905 - 11255841
Alignment:
Q  363 tgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    |||||||||| ||||||||||||  || |||| |||||| |||||| ||||||||||||||||||    
T  11255905 tgctgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 11255841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 314
Target Start/End: Original strand, 47941809 - 47941900
Alignment:
Q  223 tcgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaattt 314  Q
    |||||| |||||||||||| ||||||||||||||| || | || |||||||||| | |||||   |||||||||||  || |||||||||||    
T  47941809 tcgagtgaaccatcaatttagtccctgaatttttacgggtcggtcaaattcgtctctcaattatgcgaaatatcaatttaatccctgaattt 47941900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 233 - 330
Target Start/End: Original strand, 42879283 - 42879380
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaa 330  Q
    |||||| |||||||||||||||||| || | |||||| |||||||| |||||   |||||||||||  || ||| ||||||||||  ||||| |||||    
T  42879283 catcaacttcgtccctgaatttttacgggtcggccaacttcgtccctcaattatgcgaaatatcaatttaatccatgaatttgttaaatgtcaatcaa 42879380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 233 - 330
Target Start/End: Original strand, 44992816 - 44992913
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaa 330  Q
    |||||| |||||||||||||||||| || | |||||| |||||||| |||||   |||||||||||  || ||||||| ||||||  ||||| |||||    
T  44992816 catcaacttcgtccctgaatttttacgggtcggccaacttcgtccctcaattatgcgaaatatcaatttaatccctgagtttgttaaatgtcaatcaa 44992913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 366 - 427
Target Start/End: Original strand, 51012087 - 51012148
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    ||||||| ||||||||||||  || |||| |||||| |||||| ||||||||||||||||||    
T  51012087 tgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 51012148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 348
Target Start/End: Original strand, 35996063 - 35996186
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    |||| |||||||||||| ||| ||| ||||||| || | || |||||||||||| ||||||  | |||||||||  || ||||||||||| |  || |||    
T  35996063 gagtgaaccatcaatttagtctctggatttttatgggtcggtcaaattcgtccctcaattgtgcaaaatatcaatttaatccctgaatttatcagacgtc 35996162  T
Q  325 catcaatttcgtccctccgtccaa 348  Q
    ||||||    ||||||||||||||    
T  35996163 catcaaaaaggtccctccgtccaa 35996186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 425
Target Start/End: Original strand, 4519535 - 4519597
Alignment:
Q  363 tgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatgga 425  Q
    |||||||||| ||||||||||||| |||||| ||| ||| ||| || ||||||| ||||||||    
T  4519535 tgctgtgttgtcttgtacacgtggcaaaaagaaagtcacgtgttcaaggactaatttgatgga 4519597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 224 - 338
Target Start/End: Complemental strand, 35997859 - 35997745
Alignment:
Q  224 cgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgt 323  Q
    ||||| || |||||| || ||||||||||||| | || | |||||||||||| || |||||  | ||||||||||  || ||||||||||||||   |||    
T  35997859 cgagtgaatcatcaactttgtccctgaattttcacgggtcggccaaattcgttcctcaattataagaaatatcaatttaatccctgaatttgttaattgt 35997760  T
Q  324 ccatcaatttcgtcc 338  Q
    | |||||||| ||||    
T  35997759 caatcaatttagtcc 35997745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 2350631 - 2350558
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaa 298  Q
    |||| |||||||||||| ||||||||||||| | || | ||||||||| ||||| |||||   |||||||||||    
T  2350631 gagtgaaccatcaatttagtccctgaattttcatgggtcggccaaatttgtccctcaattatgcgaaatatcaa 2350558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 330
Target Start/End: Complemental strand, 2828494 - 2828397
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaa 330  Q
    |||||| |||||||||||||||||| || | |||||| || ||||| |||||   |||||||||||  || ||| ||||||||||  ||||| |||||    
T  2828494 catcaacttcgtccctgaatttttatgggtcggccaactttgtccctcaattatgcgaaatatcaatttaatccttgaatttgttaaatgtcaatcaa 2828397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 330
Target Start/End: Complemental strand, 10372830 - 10372725
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    |||| ||||||||| |||||||||||||||| | |  | ||||||||| ||||| |||||   |||||||||||  |  |||||||||||||  || |||    
T  10372830 gagtgaaccatcaaattcgtccctgaattttcacgcgtcggccaaattagtccctcaattatgcgaaatatcaatttcatccctgaatttgtcagacgtc 10372731  T
Q  325 catcaa 330  Q
    ||||||    
T  10372730 catcaa 10372725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 330
Target Start/End: Complemental strand, 39085235 - 39085138
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaa 330  Q
    |||||| |||||||||||||||||| || | || ||| |||||||| |||||   |||||||||||  || ||| ||||||||||  ||||| |||||    
T  39085235 catcaacttcgtccctgaatttttacgggtcggtcaacttcgtccctcaattatgcgaaatatcaatttaatccatgaatttgttaaatgtcaatcaa 39085138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 338
Target Start/End: Original strand, 44792942 - 44793047
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatt 332  Q
    |||||| || ||||||||||| | | || | ||||||||||||||| |||||   |||||||||||  || ||||||||||||||   |||| |||||||    
T  44792942 catcaacttagtccctgaattatcacgggtcggccaaattcgtccctcaattatgcgaaatatcaatttaatccctgaatttgttaattgtcaatcaatt 44793041  T
Q  333 tcgtcc 338  Q
    | ||||    
T  44793042 tagtcc 44793047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 422
Target Start/End: Original strand, 2827566 - 2827622
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgat 422  Q
    ||||||| ||||||| ||||| || ||||||||||| ||| |||||||||| |||||    
T  2827566 tgtgttgtcttgtacgcgtggcaagaaggaagccacgtgttcagggactaatttgat 2827622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 422
Target Start/End: Original strand, 35996225 - 35996281
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgat 422  Q
    ||||||| ||||||||||||| || ||||||||||| ||| || ||||||| |||||    
T  35996225 tgtgttgtcttgtacacgtggcaagaaggaagccacgtgttcaaggactaatttgat 35996281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 422
Target Start/End: Complemental strand, 51041893 - 51041837
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgat 422  Q
    ||||||| ||| ||||||||| || ||||||||||||||| || ||||||| |||||    
T  51041893 tgtgttgtcttatacacgtggcaagaaggaagccacatgttcaaggactaatttgat 51041837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 169; Significance: 2e-90; HSPs: 46)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 224 - 436
Target Start/End: Complemental strand, 4322697 - 4322485
Alignment:
Q  224 cgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgt 323  Q
    ||||||||||||||||||||||||||||| || |||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||  |    
T  4322697 cgagtaaaccatcaatttcgtccctgaatattcagggatcggccaaactcgtcccccaatttaacgaaatatcaaaatagtccctgaatttgtttgacat 4322598  T
Q  324 ccatcaatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatg 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||    
T  4322597 ccatcaatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaagaaagtcacgtgtacagggactaaattgatg 4322498  T
Q  424 gaaaatgcgaaaa 436  Q
    |||||| ||||||    
T  4322497 gaaaatacgaaaa 4322485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 225 - 436
Target Start/End: Original strand, 45463670 - 45463881
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    |||| |||||||||||||||||||||||||| |||| | |||||||||||||||  |||| ||||||||||||||||||||||||||||||||||| |||    
T  45463670 gagtgaaccatcaatttcgtccctgaattttcaggggtcggccaaattcgtccctaaatttaacgaaatatcaaaatagtccctgaatttgtttgacgtc 45463769  T
Q  325 catcaatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatgg 424  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  45463770 catcaatttcgtccctccgtccaaaaggtccgttagtgtgttgtgttggcttgtacacgtgggaaaaagaaagccacgtgtacagggactaaattgatgg 45463869  T
Q  425 aaaatgcgaaaa 436  Q
    ||||| ||||||    
T  45463870 aaaatacgaaaa 45463881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 224 - 436
Target Start/End: Complemental strand, 48303774 - 48303562
Alignment:
Q  224 cgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgt 323  Q
    |||||||||||||||||||||||||||||||| || ||| || ||||| ||||| | |||| ||| ||||||||||||||||||||||||| ||||| ||    
T  48303774 cgagtaaaccatcaatttcgtccctgaattttcagcgatcggtcaaatccgtcctctaatttaacaaaatatcaaaatagtccctgaatttatttgacgt 48303675  T
Q  324 ccatcaatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatg 423  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||     
T  48303674 ccatcaatttcgtccctccgtccaaaaggtctgttagtgtgctgtgttggcttgtacacgtgggaaaaagaaagccacgtgtacagggactaaattgata 48303575  T
Q  424 gaaaatgcgaaaa 436  Q
    |||||| ||||||    
T  48303574 gaaaatacgaaaa 48303562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 225 - 436
Target Start/End: Original strand, 34690995 - 34691206
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||| ||| |||||||||||||||| |||||||||| ||| |||    
T  34690995 gagtaaaccatcaatttcatccctgaatttttagggatcggccaaattcgtccccaaatttaacaaaatatcaaaatagtctctgaatttgtctgacgtc 34691094  T
Q  325 catcaatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatgg 424  Q
    |||||||||||||||||| ||||||||||  ||||||||| ||||||||||||||||||||| || ||||||||||| |||||||||| |||||||||||    
T  34691095 catcaatttcgtccctccatccaaaaggtatgttagtgtgttgtgttggcttgtacacgtggcaacaaggaagccacgtgtacagggattaaattgatgg 34691194  T
Q  425 aaaatgcgaaaa 436  Q
    ||||| ||||||    
T  34691195 aaaatacgaaaa 34691206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 484 - 573
Target Start/End: Complemental strand, 48303514 - 48303425
Alignment:
Q  484 acccctatgtttcccattaccatacatcctcacatttcatacataacacatcaactaagtccctgtctgttcttcttccctccattttca 573  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  48303514 acccctatgtttcccattaccatacatcctcacatttcatacagaacacatcaattaagtccctgtctgttcttcttccctccattttca 48303425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 484 - 573
Target Start/End: Original strand, 34691254 - 34691343
Alignment:
Q  484 acccctatgtttcccattaccatacatcctcacatttcatacataacacatcaactaagtccctgtctgttcttcttccctccattttca 573  Q
    |||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||    
T  34691254 acccctatgttttccactaccatacatcctcacatttcatacagaacacatcaactaagtcactgtttgttcttcttccctccattttca 34691343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 484 - 573
Target Start/End: Original strand, 45463929 - 45464018
Alignment:
Q  484 acccctatgtttcccattaccatacatcctcacatttcatacataacacatcaactaagtccctgtctgttcttcttccctccattttca 573  Q
    ||||||||||||  |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  45463929 acccctatgtttgtcattaccatacatcctcatatttcatacagaacacatcaactaagtccctgtctgtttttcttccctccattttca 45464018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 484 - 573
Target Start/End: Complemental strand, 4322437 - 4322351
Alignment:
Q  484 acccctatgtttcccattaccatacatcctcacatttcatacataacacatcaactaagtccctgtctgttcttcttccctccattttca 573  Q
    |||||||||||| |||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||   ||||||||||||||||    
T  4322437 acccctatgtttgccattaccatacatgctcacctttcatacagaacacatcaactaagtccctgtctgtt---cttccctccattttca 4322351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 230 - 307
Target Start/End: Complemental strand, 30109785 - 30109708
Alignment:
Q  230 aaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccc 307  Q
    |||||||||||||||||||||||||| |||| | |||||||||||||||| |||| ||||||||||||||||||||||    
T  30109785 aaccatcaatttcgtccctgaattttcaggggtcggccaaattcgtccccaaatttaacgaaatatcaaaatagtccc 30109708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 240 - 348
Target Start/End: Complemental strand, 34785188 - 34785080
Alignment:
Q  240 ttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccc 339  Q
    ||||||||||||||| || | || ||||||| |||||| |||| | |||||||||||||||||||||||||||||||   ||||| |||||||| |||||    
T  34785188 ttcgtccctgaatttgtacgaatcggccaaagtcgtcctccaaattaacgaaatatcaaaatagtccctgaatttgtaaaatgtcaatcaatttagtccc 34785089  T
Q  340 tccgtccaa 348  Q
    |||||||||    
T  34785088 tccgtccaa 34785080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 267 - 349
Target Start/End: Complemental strand, 34692797 - 34692715
Alignment:
Q  267 caaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaa 349  Q
    |||||| || || ||||| |||||||||| ||||||||||||||||||||   |||||||||||||| |||||||||||||||    
T  34692797 caaatttgtacctcaatttaacgaaatatgaaaatagtccctgaatttgtaaaatgtccatcaattttgtccctccgtccaaa 34692715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 21027017 - 21026961
Alignment:
Q  167 tcataataaatgaataaataaaaaacagcagttttggaaagagagagaaacatagat 223  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||    
T  21027017 tcataataaataaataaataaaaaacagcagttttggaaagagagaataacatagat 21026961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 349
Target Start/End: Original strand, 48302191 - 48302275
Alignment:
Q  265 gccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaa 349  Q
    |||||||||||||| ||||| |||||||||||||||||||| ||||||||||   |||| | ||||||| |||| ||||||||||    
T  48302191 gccaaattcgtccctcaatttaacgaaatatcaaaatagtctctgaatttgtaaaatgttcgtcaattttgtccttccgtccaaa 48302275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 224 - 330
Target Start/End: Original strand, 30108564 - 30108670
Alignment:
Q  224 cgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgt 323  Q
    ||||| || |||||| |||||||||||||||||| || | |||||| |||||||| |||||   |||||||||||  || ||||||||||||||  ||||    
T  30108564 cgagtgaatcatcaacttcgtccctgaatttttacgggtcggccaacttcgtccctcaattatgcgaaatatcaatttaatccctgaatttgttaaatgt 30108663  T
Q  324 ccatcaa 330  Q
    | |||||    
T  30108664 caatcaa 30108670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 330
Target Start/End: Original strand, 46810713 - 46810810
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaa 330  Q
    |||||| |||||||||||||||| | |||| ||||||||| ||||| |||||   |||||||||||  || ||||||||||||||  ||||| |||||    
T  46810713 catcaacttcgtccctgaattttcacggatcggccaaattagtccctcaattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaa 46810810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 28172241 - 28172293
Alignment:
Q  171 aataaatgaataaataaaaaacagcagttttggaaagagagagaaacatagat 223  Q
    ||||||| |||||||| ||||||||| ||||| ||||||||||||||||||||    
T  28172241 aataaataaataaatacaaaacagcaattttgaaaagagagagaaacatagat 28172293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 288 - 359
Target Start/End: Complemental strand, 29996575 - 29996504
Alignment:
Q  288 cgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaaaggtccgtta 359  Q
    |||||||||||| || |||||||||||    || ||||||||| ||||||||||| ||||||||||||||||    
T  29996575 cgaaatatcaaattaatccctgaattttacagacgtccatcaaattcgtccctccatccaaaaggtccgtta 29996504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 425
Target Start/End: Original strand, 38613625 - 38613684
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatgga 425  Q
    ||||||| |||||||||||||||||||| ||||||| ||| || ||||||| ||||||||    
T  38613625 tgtgttgtcttgtacacgtgggaaaaagaaagccacgtgttcaaggactaacttgatgga 38613684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 225 - 348
Target Start/End: Complemental strand, 46996826 - 46996703
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    |||| ||||||||| |||||||||||||||| | |  | |||||| |||||||| |||||   |||||||||||  ||||| ||||||||||  || |||    
T  46996826 gagtgaaccatcaaattcgtccctgaattttcacgcgtcggccaacttcgtccctcaattatgcgaaatatcaacttagtcactgaatttgtcagacgtc 46996727  T
Q  325 catcaatttcgtccctccgtccaa 348  Q
    ||||||    ||||||||||||||    
T  46996726 catcaaaaaggtccctccgtccaa 46996703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 225 - 316
Target Start/End: Complemental strand, 47341810 - 47341719
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgt 316  Q
    |||| ||||||||| ||||||| |||||||| | || | |||||||||| |||| |||||   |||||||||||  ||||||||||||||||    
T  47341810 gagtgaaccatcaaattcgtccttgaattttcacgggtcggccaaattcatccctcaattatgcgaaatatcaacttagtccctgaatttgt 47341719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 11682846 - 11682904
Alignment:
Q  290 aaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaa 348  Q
    |||||||||| |||||| |||||| ||| || |||||||||||| ||||||||||||||    
T  11682846 aaatatcaaattagtccttgaattcgttagacgtccatcaatttagtccctccgtccaa 11682904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 316
Target Start/End: Complemental strand, 38613608 - 38613514
Alignment:
Q  222 atcgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgt 316  Q
    ||||||| ||||||||| ||||||| | |||||| | || | |||||||||| |||| |||||   |||||||||||  ||||||||||||||||    
T  38613608 atcgagtgaaccatcaaattcgtccttcaattttcacgggtcggccaaattcatccctcaattatgcgaaatatcaacttagtccctgaatttgt 38613514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 48704248 - 48704302
Alignment:
Q  264 ggccaaattcgtcccccaattg-aacgaaatatcaaaatagtccctgaatttgtt 317  Q
    |||||||||||||||||| ||  |||||||||||||||||||||| |||||||||    
T  48704248 ggccaaattcgtcccccagttttaacgaaatatcaaaatagtccccgaatttgtt 48704302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 23955368 - 23955323
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtccc 278  Q
    |||||| |||||| ||||||||||| ||||||||||||||||||||    
T  23955368 catcaacttcgtctctgaatttttatggattggccaaattcgtccc 23955323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 233 - 330
Target Start/End: Complemental strand, 36762763 - 36762666
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaa 330  Q
    |||||| |||||||||||||||||| |||| ||||||||| ||||| |||||    ||||||||||  ||  |||||||||||||  ||||| |||||    
T  36762763 catcaacttcgtccctgaatttttacggatcggccaaattagtccctcaattatgtgaaatatcaatttaacccctgaatttgttaaatgtcaatcaa 36762666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 40346071 - 40346108
Alignment:
Q  186 aaaaaacagcagttttggaaagagagagaaacatagat 223  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  40346071 aaaaaacagcagttttggaaagagagaaaaacatagat 40346108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 8423407 - 8423316
Alignment:
Q  223 tcgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaattt 314  Q
    |||||| |||||||||||| ||||||||||||| | || |  |||||||| ||||| |||||   |||||||||||  || |||||||||||    
T  8423407 tcgagtgaaccatcaatttagtccctgaattttcacgggtcagccaaatttgtccctcaattatgcgaaatatcaatttaatccctgaattt 8423316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 359
Target Start/End: Original strand, 20478105 - 20478176
Alignment:
Q  288 cgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaaaggtccgtta 359  Q
    |||||||||||| ||||||||||||||    || ||||||||| |  |||||||||||||||| ||||||||    
T  20478105 cgaaatatcaaattagtccctgaattttgcagacgtccatcaaatcagtccctccgtccaaaatgtccgtta 20478176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 425
Target Start/End: Original strand, 23953967 - 23954026
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatgga 425  Q
    ||||||| ||||||||||||| |||||||||||||| ||| |  ||||||| ||||||||    
T  23953967 tgtgttgtcttgtacacgtggcaaaaaggaagccacgtgttccaggactaatttgatgga 23954026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 348
Target Start/End: Complemental strand, 33038913 - 33038798
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatt 332  Q
    |||||| ||||||| |||||||||| || | || ||||||| |||| |||||   |||||||||||  |||||||||||||| |  || |||||||||      
T  33038913 catcaaattcgtccttgaatttttatgggtcggtcaaattcatccctcaattatgcgaaatatcaacttagtccctgaatttttcagacgtccatcaaaa 33038814  T
Q  333 tcgtccctccgtccaa 348  Q
      ||||||||||||||    
T  33038813 aggtccctccgtccaa 33038798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 422
Target Start/End: Complemental strand, 47341647 - 47341588
Alignment:
Q  363 tgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgat 422  Q
    |||||||||| ||||||||||||| || ||||||||||| ||| || ||||||| |||||    
T  47341647 tgctgtgttgtcttgtacacgtggcaagaaggaagccacgtgttcaaggactaatttgat 47341588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 361
Target Start/End: Original strand, 56393 - 56466
Alignment:
Q  288 cgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaaaggtccgttagt 361  Q
    |||||||||||| ||||||||||||||    || |||||||||||   ||||||||||||||| ||| ||||||    
T  56393 cgaaatatcaaattagtccctgaattttacagacgtccatcaattcactccctccgtccaaaatgtctgttagt 56466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 427
Target Start/End: Original strand, 1546449 - 1546510
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    ||||||| ||| || |||||  |||||||||| ||| |||||| ||||||||||||||||||    
T  1546449 tgtgttgtcttatatacgtgtcaaaaaggaagtcacgtgtacaaggactaaattgatggaaa 1546510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 330
Target Start/End: Original strand, 4321046 - 4321143
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaa 330  Q
    |||||| |||||||||||||||| | || | |||||| ||||||||  ||||   |||||||||||  || ||||||||||||||  ||||| |||||    
T  4321046 catcaacttcgtccctgaattttcacgggtcggccaacttcgtcccttaattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaa 4321143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 338
Target Start/End: Original strand, 8421424 - 8421529
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatt 332  Q
    |||||| || ||||||||||| | | || | ||||||||||||||| |||||   |||||||||||  || ||||||||||||||   |||| |||||||    
T  8421424 catcaacttagtccctgaattatcacgggtcggccaaattcgtccctcaattatgcgaaatatcaatttaatccctgaatttgttaattgtcaatcaatt 8421523  T
Q  333 tcgtcc 338  Q
    | ||||    
T  8421524 tagtcc 8421529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 338
Target Start/End: Original strand, 35342433 - 35342538
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatt 332  Q
    |||||| || ||||||||||| ||| || | ||||||||| ||||| |||||   |||||||||||  || ||||||||||||||   |||| |||||||    
T  35342433 catcaacttagtccctgaattattacgggtcggccaaatttgtccctcaattatgcgaaatatcaatttaatccctgaatttgttaattgtcaatcaatt 35342532  T
Q  333 tcgtcc 338  Q
    | ||||    
T  35342533 tagtcc 35342538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 314
Target Start/End: Complemental strand, 35344414 - 35344325
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaattt 314  Q
    |||| |||||||||||| ||||| ||||||| | || |  |||||||||||||| |||||   |||||||||||  || |||||||||||    
T  35344414 gagtgaaccatcaatttagtccccgaattttcacgggtcagccaaattcgtccctcaattatgcgaaatatcaatttaatccctgaattt 35344325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 330
Target Start/End: Complemental strand, 45465267 - 45465170
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaa 330  Q
    |||||| ||||||| |||||||||| || | || ||| |||||||| |||||   |||||||||||  || ||||||||||||||  ||||| |||||    
T  45465267 catcaacttcgtccttgaatttttacgggtcggtcaacttcgtccctcaattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaa 45465170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 427
Target Start/End: Complemental strand, 46439492 - 46439431
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    ||||||| ||||||||||||  || | || |||||| |||||| ||||||||||||||||||    
T  46439492 tgtgttgtcttgtacacgtgtcaacagggcagccacgtgtacatggactaaattgatggaaa 46439431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 330
Target Start/End: Original strand, 46994668 - 46994765
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaa 330  Q
    |||||| |||||||||||||||| | || | |||||| |||||||  |||||   |||||||||||  || ||||||||||||||  ||||| |||||    
T  46994668 catcaacttcgtccctgaattttcacgggtcggccaacttcgtccttcaattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaa 46994765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 322 - 362
Target Start/End: Original strand, 1546384 - 1546424
Alignment:
Q  322 gtccatcaatttcgtccctccgtccaaaaggtccgttagtg 362  Q
    |||||||||  | ||||||||||||||||||||||||||||    
T  1546384 gtccatcaaaatggtccctccgtccaaaaggtccgttagtg 1546424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 2492496 - 2492548
Alignment:
Q  374 cttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaa 426  Q
    ||||||||||||| |||||||||| ||| ||| || ||||||| |||||||||    
T  2492496 cttgtacacgtggcaaaaaggaagtcacgtgttcaaggactaatttgatggaa 2492548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 361
Target Start/End: Original strand, 27955378 - 27955506
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatt 332  Q
    |||||| ||||||| |||||||||| ||||  || |||||| |||| |||||  ||||||||||||  || |  ||||||||||  || |||||||||      
T  27955378 catcaaattcgtccttgaatttttacggatcagctaaattcatccctcaattttacgaaatatcaacttaatttctgaatttgtcagacgtccatcaaag 27955477  T
Q  333 tcgtccctccgtccaaaaggtccgttagt 361  Q
      ||||||||||||||  | |||||||||    
T  27955478 aggtccctccgtccaagtgctccgttagt 27955506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 30940390 - 30940326
Alignment:
Q  363 tgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    |||||||||| | ||||||| ||  || |||| |||||| |||||| ||||||||||||||||||    
T  30940390 tgctgtgttgtcctgtacacatgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 30940326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 423
Target Start/End: Complemental strand, 35693331 - 35693275
Alignment:
Q  367 gtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatg 423  Q
    |||||| ||||||||||||  || |||| |||||| |||||| ||||||||||||||    
T  35693331 gtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatg 35693275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 422
Target Start/End: Original strand, 40784508 - 40784564
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgat 422  Q
    ||||||| ||| ||||||||| || ||||||||||||||| || ||||||| |||||    
T  40784508 tgtgttgtcttatacacgtggcaagaaggaagccacatgttcaaggactaatttgat 40784564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 224 - 436
Target Start/End: Original strand, 28246662 - 28246874
Alignment:
Q  224 cgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgt 323  Q
    ||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| ||    
T  28246662 cgagtgaaccatcaatttcgtccctgaatttttaggggtcggccaaattcgtccccaaatttaacgaaatatcaaaatagttcctgaatttgtttgacgt 28246761  T
Q  324 ccatcaatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatg 423  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  28246762 ccatcaatttcgtccctctgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaagaaagccacgtgtacagggactaaattgatg 28246861  T
Q  424 gaaaatgcgaaaa 436  Q
    |||||| ||||||    
T  28246862 gaaaatacgaaaa 28246874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 230 - 436
Target Start/End: Complemental strand, 11023131 - 11022926
Alignment:
Q  230 aaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatca 329  Q
    |||||||||||||||||||||||||| |||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  11023131 aaccatcaatttcgtccctgaattttcaggg-tcggccaaattcgtcccccaatttaacgaaatatcaaaatagtccctgaatttgtttgacgtccatca 11023033  T
Q  330 atttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaaat 429  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  11023032 attccgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaagaaagccacgtgtacagggactaaattgatggaaaat 11022933  T
Q  430 gcgaaaa 436  Q
     ||||||    
T  11022932 acgaaaa 11022926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 220 - 429
Target Start/End: Original strand, 38148490 - 38148700
Alignment:
Q  220 agatcgagtaaaccatcaatttcgtccctgaatttttagggattgg-ccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgttt 318  Q
    |||| ||||||||||||||||||||||||||||||| || ||| || ||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  38148490 agattgagtaaaccatcaatttcgtccctgaattttcagagatcgggccaaatttgtcccccaatttaacgaaatatcaaaatagtccctgaatttgttt 38148589  T
Q  319 gatgtccatcaatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaat 418  Q
    || ||||||||||||||||| ||||||||||||||| ||||||||| ||| ||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  38148590 gacgtccatcaatttcgtccatccgtccaaaaggtctgttagtgtgttgtattggcttgtacacgtcggaaaaaggaagccacgtgtacagggactaaat 38148689  T
Q  419 tgatggaaaat 429  Q
    |||||||||||    
T  38148690 tgatggaaaat 38148700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 36 - 188
Target Start/End: Original strand, 31638682 - 31638834
Alignment:
Q  36 cttaattaattagaggtcatgagtttgaaagctttatcattcatcatgattctatctgatttgaagaaatggatcttctcctgcctttattatttagcca 135  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  31638682 cttacttaattagaggtcatgagtttgaaagctttatcatccatcatgattctatctgatttgaagaaatggatcttctcctgcctttattatttaacca 31638781  T
Q  136 tctctaatgtttttcatccacaactgagagctcataataaatgaataaataaa 188  Q
    ||||| |||||||||||||||||||||||||||| || |||||||||||||||    
T  31638782 tctctcatgtttttcatccacaactgagagctcacaacaaatgaataaataaa 31638834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 484 - 573
Target Start/End: Complemental strand, 11022878 - 11022789
Alignment:
Q  484 acccctatgtttcccattaccatacatcctcacatttcatacataacacatcaactaagtccctgtctgttcttcttccctccattttca 573  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11022878 acccctatgtttgccattaccatacatcctcatatttcatacataacacatcaactaagtccctgtttgttcttcttccctccattttca 11022789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 484 - 573
Target Start/End: Original strand, 38148755 - 38148844
Alignment:
Q  484 acccctatgtttcccattaccatacatcctcacatttcatacataacacatcaactaagtccctgtctgttcttcttccctccattttca 573  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||    
T  38148755 acccctatgtttctcattaccatacatcctcacatttcatacagaacacatcaactaagttccagtctgttcttcttccctccattttca 38148844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 484 - 573
Target Start/End: Original strand, 28246922 - 28247011
Alignment:
Q  484 acccctatgtttcccattaccatacatcctcacatttcatacataacacatcaactaagtccctgtctgttcttcttccctccattttca 573  Q
    |||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||    
T  28246922 acccctatgtttaccattaccatacatcctcatatttcatacagaacacatcaactaagtgtctgtctgttcttcttccctccattttca 28247011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 233 - 427
Target Start/End: Complemental strand, 11315451 - 11315258
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatt 332  Q
    |||||| ||||||| | |||||||| | || |||||||||||| ||| |||| ||||||||||||||||||| |||||||||||  || |||||||||      
T  11315451 catcaacttcgtccttaaatttttatgaatcggccaaattcgttccctaatttaacgaaatatcaaaatagttcctgaatttgtcagacgtccatcaaaa 11315352  T
Q  333 tcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    | ||||||||||||||| | || | ||   || ||||||| ||||||||||||  || |||||||||||||||||| |||| || ||||||||||    
T  11315351 tggtccctccgtccaaatgttctgcta-catgttgtgttgtcttgtacacgtgtcaacaaggaagccacatgtacaaggaccaatttgatggaaa 11315258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 101 - 223
Target Start/End: Original strand, 19271242 - 19271366
Alignment:
Q  101 gaaatggatcttctcctgcctttattatttagccatctctaatgtttttcatccacaa--ctgagagctcataataaatgaataaataaaaaacagcagt 198  Q
    |||||||||| |||| ||||| |||| || ||||| | || |||| |||||||||  |  |||||||||||||| |||| || ||||||| |||||||||    
T  19271242 gaaatggatcctctcttgcctatattgttcagccacccctcatgtgtttcatccaacaggctgagagctcataacaaataaagaaataaataacagcagt 19271341  T
Q  199 tttggaaagagagagaaacatagat 223  Q
    |||||||||||||| |||| |||||    
T  19271342 tttggaaagagagaaaaacgtagat 19271366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 230 - 314
Target Start/End: Original strand, 39561 - 39645
Alignment:
Q  230 aaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaattt 314  Q
    |||||||||||| ||||||||||||||| || | ||||||||||||||| |||||   |||||||||||  || |||||||||||    
T  39561 aaccatcaatttagtccctgaatttttacgggtcggccaaattcgtccctcaattatgcgaaatatcaatttaatccctgaattt 39645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 261 - 345
Target Start/End: Complemental strand, 38150069 - 38149986
Alignment:
Q  261 attggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtc 345  Q
    |||||||||||||||||| ||||| |||||||||||||||||||   |||||||||   |||||| ||||||| |||||||||||    
T  38150069 attggccaaattcgtccctcaatttaacgaaatatcaaaatagt-tatgaatttgtaaaatgtccgtcaattttgtccctccgtc 38149986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 362
Target Start/End: Complemental strand, 39664882 - 39664755
Alignment:
Q  235 tcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttc 334  Q
    |||| ||||||| |||||||| |   || |||||||||||||||| ||||  |||||||||| |  ||||||||||||||    || |||||||||  |     
T  39664882 tcaaattcgtccttgaattttaaaaaatcggccaaattcgtccccgaattttacgaaatatctatttagtccctgaattttacagacgtccatcaaaatg 39664783  T
Q  335 gtccctccgtccaaaaggtccgttagtg 362  Q
    ||||||||||||||||| ||||||||||    
T  39664782 gtccctccgtccaaaagctccgttagtg 39664755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 330
Target Start/End: Complemental strand, 28248258 - 28248161
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaa 330  Q
    |||||| |||||||||||||||||| || | |||||| |||||||| |||||   |||||||||||  || ||||||||||||||  ||||| |||||    
T  28248258 catcaacttcgtccctgaatttttacgggtcggccaacttcgtccctcaattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaa 28248161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 362
Target Start/End: Original strand, 17946159 - 17946231
Alignment:
Q  290 aaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaaaggtccgttagtg 362  Q
    |||||||||  | |||||||||||| | | |||||||||||  | ||||||||||||||||||||||||||||    
T  17946159 aaatatcaattttgtccctgaatttctctcatgtccatcaaaatggtccctccgtccaaaaggtccgttagtg 17946231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 362
Target Start/End: Original strand, 7744106 - 7744180
Alignment:
Q  288 cgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaaaggtccgttagtg 362  Q
    |||||||||||  | |||||||||||| | | |||||||||||  | |||||||| |||||||||||||||||||    
T  7744106 cgaaatatcaatttcgtccctgaatttctctcatgtccatcaaaatggtccctccatccaaaaggtccgttagtg 7744180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 233 - 314
Target Start/End: Complemental strand, 41225 - 41144
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaattt 314  Q
    |||||| |||||||||||||||| | || | ||||||||||||||| |||||   |||||||||||  || |||||||||||    
T  41225 catcaacttcgtccctgaattttcacgggtcggccaaattcgtccctcaattatgcgaaatatcaatttaatccctgaattt 41144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 233 - 330
Target Start/End: Original strand, 11021541 - 11021638
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaa 330  Q
    |||||| |||||||||||||||| | || | |||||| |||||||| |||||   |||||||||||  || ||||||||||||||  ||||| |||||    
T  11021541 catcaacttcgtccctgaattttcacgggtcggccaacttcgtccctcaattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaa 11021638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 225 - 330
Target Start/End: Original strand, 37417273 - 37417378
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    |||| ||||||||  ||||||| |||||||| | || | |||||||||| |||| |||||   |||||||||||  ||||||||||||||||  || |||    
T  37417273 gagtgaaccatcatattcgtccttgaattttcatgggtcggccaaattcatccctcaattatgcgaaatatcaacttagtccctgaatttgtcagacgtc 37417372  T
Q  325 catcaa 330  Q
    ||||||    
T  37417373 catcaa 37417378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 330
Target Start/End: Original strand, 25619665 - 25619765
Alignment:
Q  230 aaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatca 329  Q
    ||||||||| ||||||| |||||||||| || | || ||||||| |||| |||||   | |||||||||  ||||||||||||||||   ||||||||||    
T  25619665 aaccatcaaattcgtccttgaatttttatgggtcggtcaaattcatccctcaattatgcaaaatatcaacttagtccctgaatttgtcatatgtccatca 25619764  T
Q  330 a 330  Q
    |    
T  25619765 a 25619765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 359
Target Start/End: Original strand, 37020572 - 37020642
Alignment:
Q  289 gaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaaaggtccgtta 359  Q
    ||||||||||| ||||||||||||||    || ||||||||| |  |||||||||||||||| ||||||||    
T  37020572 gaaatatcaaattagtccctgaattttgcagacgtccatcaaatcagtccctccgtccaaaatgtccgtta 37020642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 423
Target Start/End: Original strand, 6797669 - 6797726
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatg 423  Q
    ||||||| ||||||||||||  || |||| |||||| |||||| ||||||||||||||    
T  6797669 tgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatg 6797726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 427
Target Start/End: Complemental strand, 10716865 - 10716804
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    ||||||| ||||||||||||  || ||||||||||| |||||| |||| || ||||||||||    
T  10716865 tgtgttgtcttgtacacgtgtcaacaaggaagccacgtgtacaaggaccaatttgatggaaa 10716804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 427
Target Start/End: Complemental strand, 14389066 - 14389005
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    ||||||| ||||||||||||  || |||| |||||| |||||| ||||||| ||||||||||    
T  14389066 tgtgttgtcttgtacacgtgtcaataaggcagccacgtgtacaaggactaacttgatggaaa 14389005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 314
Target Start/End: Original strand, 15372499 - 15372588
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaattt 314  Q
    |||| |||||||||||| ||||||||||||| | || | ||||||||||| ||| |||||   | |||||||||  || |||||||||||    
T  15372499 gagtgaaccatcaatttagtccctgaattttcacgggtcggccaaattcgcccctcaattatgcaaaatatcaatttaatccctgaattt 15372588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 427
Target Start/End: Original strand, 17946256 - 17946317
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    ||||||| | ||||||| ||  |||||||||| ||| |||||| ||||||||||||||||||    
T  17946256 tgtgttgtcatgtacacatgtcaaaaaggaagtcacgtgtacaaggactaaattgatggaaa 17946317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 416
Target Start/End: Original strand, 37417432 - 37417485
Alignment:
Q  363 tgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaa 416  Q
    |||||||||| ||||||||||||| || ||||||||||| ||| || |||||||    
T  37417432 tgctgtgttgtcttgtacacgtggcaagaaggaagccacgtgttcaaggactaa 37417485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 314
Target Start/End: Original strand, 41706539 - 41706628
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaattt 314  Q
    |||| |||||||||||| || |||||||||| | || | || |||||||||||| |||||   |||||||||||  || |||||||||||    
T  41706539 gagtgaaccatcaatttagttcctgaattttcacgggtcggtcaaattcgtccctcaattatgcgaaatatcaatttaatccctgaattt 41706628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 40560382 - 40560446
Alignment:
Q  363 tgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    |||||||||| | ||||| ||||  || |||| |||||| |||||| ||||||||||||||||||    
T  40560382 tgctgtgttgtcatgtacgcgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 40560446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 42519190 - 42519126
Alignment:
Q  363 tgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    |||||||||| | ||||||||||  || |||| || ||| |||||| ||||||||||||||||||    
T  42519190 tgctgtgttgtcctgtacacgtgtcaacaaggcagtcacgtgtacaaggactaaattgatggaaa 42519126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 224 - 436
Target Start/End: Original strand, 5783363 - 5783575
Alignment:
Q  224 cgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgt 323  Q
    ||||| ||||||||||||||||||||||||||||||| | |||||||||| || ||||||| ||||||||||||||||||||||||||||||||||| ||    
T  5783363 cgagtgaaccatcaatttcgtccctgaatttttaggggtcggccaaattcatctcccaatttaacgaaatatcaaaatagtccctgaatttgtttgacgt 5783462  T
Q  324 ccatcaatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatg 423  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  5783463 ccatcaatttcgtccctccgtccaaaaggtccgttagtgtgttgtgttggcttgtacacgtgggaaaaagaaagccacgtgtacagggactaaattgatg 5783562  T
Q  424 gaaaatgcgaaaa 436  Q
    |||||| ||||||    
T  5783563 gaaaatacgaaaa 5783575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 484 - 573
Target Start/End: Original strand, 5783623 - 5783712
Alignment:
Q  484 acccctatgtttcccattaccatacatcctcacatttcatacataacacatcaactaagtccctgtctgttcttcttccctccattttca 573  Q
    |||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  5783623 acccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccctgtttgttcttcttccctccattttca 5783712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 362
Target Start/End: Complemental strand, 34778252 - 34778125
Alignment:
Q  235 tcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttc 334  Q
    |||| ||||||| |||||||| |   || |||||||| ||||||  ||||   |||||||||||| ||||||||||||||    ||||||||||||  |     
T  34778252 tcaaattcgtccttgaattttaaaaaatcggccaaatacgtccctgaattttgcgaaatatcaaattagtccctgaattttacagatgtccatcaaaatg 34778153  T
Q  335 gtccctccgtccaaaaggtccgttagtg 362  Q
    ||||||||||||||||| ||||||||||    
T  34778152 gtccctccgtccaaaagctccgttagtg 34778125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 348
Target Start/End: Original strand, 42134482 - 42134605
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    |||| ||||||||| ||||||| |||||||||| || | ||||||| || |||| |||||   |||||||||||  ||||||||||||||||  || |||    
T  42134482 gagtgaaccatcaaattcgtccttgaatttttacgggtcggccaaaatcatccctcaattatgcgaaatatcaacttagtccctgaatttgtcagacgtc 42134581  T
Q  325 catcaatttcgtccctccgtccaa 348  Q
    ||||||    ||||||||||||||    
T  42134582 catcaaaaaggtccctccgtccaa 42134605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 359
Target Start/End: Complemental strand, 46583617 - 46583546
Alignment:
Q  288 cgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaaaggtccgtta 359  Q
    |||||||||||| ||||||||||||||    || ||||||||| || |||||||||||||||||||||||||    
T  46583617 cgaaatatcaaattagtccctgaattttacagacgtccatcaaatttgtccctccgtccaaaaggtccgtta 46583546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 361
Target Start/End: Complemental strand, 33602704 - 33602632
Alignment:
Q  289 gaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaaaggtccgttagt 361  Q
    ||||||||||| ||||||||||||||    || |||| |||| || |||||||||||||||||||||||||||    
T  33602704 gaaatatcaaattagtccctgaattttacagacgtccgtcaaattagtccctccgtccaaaaggtccgttagt 33602632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 34041904 - 34041828
Alignment:
Q  240 ttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgt 316  Q
    |||||||||||||||  | | || | ||||||||||||| ||||| ||||||  |||||||||||||||||||||||    
T  34041904 ttcgtccctgaatttgcacgaatggaccaaattcgtccctcaatttaacgaataatcaaaatagtccctgaatttgt 34041828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 38586213 - 38586157
Alignment:
Q  167 tcataataaatgaataaataaaaaacagcagttttggaaagagagagaaacatagat 223  Q
    |||||| |||| ||||||||||||||| |||||||| ||||||||| ||||||||||    
T  38586213 tcataacaaataaataaataaaaaacaacagttttgaaaagagagaaaaacatagat 38586157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 422
Target Start/End: Original strand, 42134641 - 42134700
Alignment:
Q  363 tgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgat 422  Q
    |||||||||| ||||||||||||| || ||||||||||||||| || ||||||| |||||    
T  42134641 tgctgtgttgtcttgtacacgtggcaagaaggaagccacatgttcaaggactaatttgat 42134700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 330
Target Start/End: Complemental strand, 18184068 - 18183962
Alignment:
Q  224 cgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgt 323  Q
    ||||| ||||||||| ||||||  |||||||||| || | ||||||| || |||| |||||   |||||||||||  ||||||||||||||||  || ||    
T  18184068 cgagtgaaccatcaaattcgtctttgaatttttacggttcggccaaaatcatccctcaattatgcgaaatatcaacttagtccctgaatttgtcagacgt 18183969  T
Q  324 ccatcaa 330  Q
    |||||||    
T  18183968 ccatcaa 18183962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 366 - 427
Target Start/End: Original strand, 2869741 - 2869802
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    ||||||| | ||||||||||  || |||| ||||||||||||| ||||||||||||||||||    
T  2869741 tgtgttgtcctgtacacgtgtcaacaaggcagccacatgtacaaggactaaattgatggaaa 2869802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 366 - 427
Target Start/End: Complemental strand, 26225516 - 26225455
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    ||||||| ||||||||||||  || || | ||||||||||||| ||||||||||||||||||    
T  26225516 tgtgttgtcttgtacacgtgtcaacaaagcagccacatgtacaaggactaaattgatggaaa 26225455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 366 - 427
Target Start/End: Complemental strand, 34778101 - 34778040
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    ||||||| ||||||||||||  || |||| |||||| |||||| ||||||||||||||||||    
T  34778101 tgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 34778040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 359
Target Start/End: Complemental strand, 4856080 - 4855956
Alignment:
Q  235 tcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttc 334  Q
    |||| ||||||| |||||||| |   || |||||||| ||||||  ||||   |||||||||||| ||||||||||||||    || |||||||||  |     
T  4856080 tcaaattcgtccttgaattttaaaaaatcggccaaatacgtccctgaattttgcgaaatatcaaattagtccctgaattttacagacgtccatcaaaatg 4855981  T
Q  335 gtccctccgtccaaaaggtccgtta 359  Q
    ||||||||||||||||| |||||||    
T  4855980 gtccctccgtccaaaagctccgtta 4855956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 15104600 - 15104664
Alignment:
Q  363 tgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    |||||||||| ||||||||||||  || |||| |||||| |||||| ||||||| ||||||||||    
T  15104600 tgctgtgttgtcttgtacacgtgtcaataaggcagccacgtgtacaaggactaatttgatggaaa 15104664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 426
Target Start/End: Complemental strand, 18183906 - 18183846
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaa 426  Q
    ||||||| ||||||||||||| ||||| |||||||| ||| || ||||||| |||||||||    
T  18183906 tgtgttgtcttgtacacgtggcaaaaaagaagccacgtgttcaaggactaatttgatggaa 18183846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 27087441 - 27087505
Alignment:
Q  363 tgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    |||||||||| ||||||||||||  || |||| |||||| |||||| ||||| ||||||||||||    
T  27087441 tgctgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactgaattgatggaaa 27087505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 359
Target Start/End: Complemental strand, 9121729 - 9121658
Alignment:
Q  288 cgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaaaggtccgtta 359  Q
    |||||||||||| ||||||||||||||    || ||||||||| |  |||||||||||||||| ||||||||    
T  9121729 cgaaatatcaaattagtccctgaattttgcagacgtccatcaaatcagtccctccgtccaaaatgtccgtta 9121658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 422
Target Start/End: Complemental strand, 45380949 - 45380890
Alignment:
Q  363 tgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgat 422  Q
    |||||||||| ||||||||||||| || ||||||||||| ||| || ||||||| |||||    
T  45380949 tgctgtgttgtcttgtacacgtggcaagaaggaagccacgtgttcaaggactaatttgat 45380890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 224 - 330
Target Start/End: Complemental strand, 5784959 - 5784853
Alignment:
Q  224 cgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgt 323  Q
    ||||| || |||||| |||||||||||||||| | || | || ||| |||||||| |||||   |||||||||||  || ||||||||||||||  ||||    
T  5784959 cgagtgaatcatcaacttcgtccctgaattttcacgggtcggtcaacttcgtccctcaattatgcgaaatatcaatttaatccctgaatttgttaaatgt 5784860  T
Q  324 ccatcaa 330  Q
    | |||||    
T  5784859 caatcaa 5784853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 26765376 - 26765450
Alignment:
Q  147 tttcatcca-caactgagagctcataataaatgaataaataaaaaacagcagttttggaaagagagagaaacata 220  Q
    ||||||||| |||||||||| |||||| |||| || ||||||| ||| ||||||||| ||| ||||| |||||||    
T  26765376 tttcatccaacaactgagagatcataacaaataaagaaataaataactgcagttttgaaaatagagaaaaacata 26765450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 224 - 298
Target Start/End: Original strand, 27940607 - 27940681
Alignment:
Q  224 cgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaa 298  Q
    ||||| |||||||||||| ||||||||||||| |  | |||| |||||||||||| |||||   |||||||||||    
T  27940607 cgagtgaaccatcaatttagtccctgaattttcacaggttggtcaaattcgtccctcaattatgcgaaatatcaa 27940681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 224 - 330
Target Start/End: Original strand, 33679258 - 33679364
Alignment:
Q  224 cgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgt 323  Q
    ||||| || ||||||||| |||| |||||||||| || |  |||||||||||||| |||||   |||||||||||  || ||| ||||||||||  ||||    
T  33679258 cgagtgaatcatcaattttgtccatgaatttttacgggtcagccaaattcgtccctcaattatgcgaaatatcaatttaatccttgaatttgttaaatgt 33679357  T
Q  324 ccatcaa 330  Q
    | |||||    
T  33679358 caatcaa 33679364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 427
Target Start/End: Complemental strand, 4855929 - 4855868
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    ||||||| ||||||||||||  || |||| || ||| |||||| ||||||||||||||||||    
T  4855929 tgtgttgtcttgtacacgtgtcaacaaggcagtcacgtgtacaaggactaaattgatggaaa 4855868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 330
Target Start/End: Original strand, 11152553 - 11152650
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaa 330  Q
    |||||| |||||||||||||||| | || | |||||| |||||||| |||||   |||||||||||  || |||| |||||||||  ||||| |||||    
T  11152553 catcaacttcgtccctgaattttcacgggtcggccaatttcgtccctcaattatgcgaaatatcaatttaatcccagaatttgttaaatgtcaatcaa 11152650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 338
Target Start/End: Complemental strand, 27952583 - 27952478
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatt 332  Q
    |||||| || ||||||||||| | | || | ||||||||||||||| |||||   |||||||||||  || ||||||||||||||   |||| |||||||    
T  27952583 catcaacttagtccctgaattatcacgggtcggccaaattcgtccctcaattatgcgaaatatcaatttaatccctgaatttgttaattgtcaatcaatt 27952484  T
Q  333 tcgtcc 338  Q
    | ||||    
T  27952483 tagtcc 27952478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 330
Target Start/End: Complemental strand, 31803783 - 31803686
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaa 330  Q
    |||||| |||||||||||||||| | || | |||||| |||||||  |||||   |||||||||||  || ||||||||||||||  ||||| |||||    
T  31803783 catcaacttcgtccctgaattttcacgggtcggccaacttcgtccttcaattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaa 31803686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 33685372 - 33685299
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaa 298  Q
    |||| ||||||||| |||||||||||||||||| || | || ||||||| |||| |||||   |||||||||||    
T  33685372 gagtgaaccatcaaattcgtccctgaatttttacgggtcggtcaaattcatccctcaattatgcgaaatatcaa 33685299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 427
Target Start/End: Complemental strand, 3013431 - 3013371
Alignment:
Q  367 gtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    |||||| | ||||||||||  || |||| |||||| |||||| ||||||||||||||||||    
T  3013431 gtgttgtcatgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 3013371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 422
Target Start/End: Complemental strand, 46638769 - 46638713
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgat 422  Q
    ||||||| ||||||| ||||| |||||||||||||| ||| ||||||| || |||||    
T  46638769 tgtgttgtcttgtacgcgtggcaaaaaggaagccacgtgttcagggacgaatttgat 46638713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 362
Target Start/End: Original strand, 51121970 - 51122042
Alignment:
Q  290 aaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaaaggtccgttagtg 362  Q
    |||||||||  | |||||||||||| | | | |||||||||  | |||||||||||||||||||| |||||||    
T  51121970 aaatatcaatttcgtccctgaatttctctcacgtccatcaaaatggtccctccgtccaaaaggtctgttagtg 51122042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 165; Significance: 6e-88; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 224 - 436
Target Start/End: Complemental strand, 40020760 - 40020548
Alignment:
Q  224 cgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgt 323  Q
    ||||| ||||||||||||||||||||||| ||||||| |  ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||    
T  40020760 cgagtgaaccatcaatttcgtccctgaatctttaggggtctgccaaattcgtccccaaatttaacgaaatatcaaaatagtccctgaatttgtttgacgt 40020661  T
Q  324 ccatcaatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatg 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||    
T  40020660 ccatcaatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaagaaaaccacgtgtacagggactaaattgatg 40020561  T
Q  424 gaaaatgcgaaaa 436  Q
    |||||| ||||||    
T  40020560 gaaaatacgaaaa 40020548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 231 - 436
Target Start/End: Complemental strand, 28433834 - 28433629
Alignment:
Q  231 accatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaa 330  Q
    ||||||||||||||||||||||||| | |||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||| |    
T  28433834 accatcaatttcgtccctgaattttcaaggatcggccaaattcgtccctcaatttaacgaaatatcaaaatagtccctgaatttgtttgacgtccatcga 28433735  T
Q  331 tttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaaatg 430  Q
    ||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||     
T  28433734 tttcgtccctccgtccaaaaggttcgttagtttgttgtgttggcttgtacacgtgggaaaaaggaagccacgtgtacatggactaaattgatggaaaata 28433635  T
Q  431 cgaaaa 436  Q
    ||||||    
T  28433634 cgaaaa 28433629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 484 - 573
Target Start/End: Complemental strand, 28433580 - 28433491
Alignment:
Q  484 acccctatgtttcccattaccatacatcctcacatttcatacataacacatcaactaagtccctgtctgttcttcttccctccattttca 573  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||    
T  28433580 acccctatgtttcccattaccatacatcctcatatttcatacagaacacatcaactaagtccctatctattcttcttccctccattttca 28433491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 484 - 573
Target Start/End: Complemental strand, 40020500 - 40020411
Alignment:
Q  484 acccctatgtttcccattaccatacatcctcacatttcatacataacacatcaactaagtccctgtctgttcttcttccctccattttca 573  Q
    |||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  40020500 acccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtctctgtctgttcttcttccctccattttca 40020411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 225 - 349
Target Start/End: Complemental strand, 23811656 - 23811532
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    |||||||  ||||| ||||||||||||||   | |||| |||||||||||||||||||||  || ||||||||||||||||| |||||||||   |||||    
T  23811656 gagtaaattatcaacttcgtccctgaattcgcacggatcggccaaattcgtcccccaattttacaaaatatcaaaatagtccttgaatttgtaaaatgtc 23811557  T
Q  325 catcaatttcgtccctccgtccaaa 349  Q
      |||||||||||||||||||||||    
T  23811556 agtcaatttcgtccctccgtccaaa 23811532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 330
Target Start/End: Original strand, 32822361 - 32822466
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    |||| ||||||||| ||||||| |||||||||| |||| |||||||||| |||| |||||     |||||||||  ||||||||||||||||  ||||||    
T  32822361 gagtgaaccatcaacttcgtccttgaatttttatggatcggccaaattcatccctcaattatttaaaatatcaacttagtccctgaatttgtcagatgtc 32822460  T
Q  325 catcaa 330  Q
    ||||||    
T  32822461 catcaa 32822466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 235 - 357
Target Start/End: Original strand, 27691164 - 27691286
Alignment:
Q  235 tcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttc 334  Q
    |||| ||||||| |||||||| |   || |||||| ||||||||  ||||   |||||||||||| ||||||||||||||    || ||||||||| | |    
T  27691164 tcaaattcgtccttgaattttgaaaaatcggccaatttcgtccctgaattttgcgaaatatcaaattagtccctgaattttacagacgtccatcaaatcc 27691263  T
Q  335 gtccctccgtccaaaaggtccgt 357  Q
    |||||||||||||||||||||||    
T  27691264 gtccctccgtccaaaaggtccgt 27691286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 349
Target Start/End: Original strand, 9184391 - 9184507
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatt 332  Q
    |||||||||||||| |||||||  | | || ||||||||||||| ||||| |   |||||||||||| ||||||||||||||||  || ||| ||| |      
T  9184391 catcaatttcgtccttgaatttgcacgaatcggccaaattcgtcgcccaactacgcgaaatatcaaattagtccctgaatttgtcagacgtcgatcgaaa 9184490  T
Q  333 tcgtccctccgtccaaa 349  Q
    | |||||||||||||||    
T  9184491 tggtccctccgtccaaa 9184507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 13108322 - 13108258
Alignment:
Q  363 tgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    |||||||||| ||||||||||||  || |||| |||||| |||||| ||||||||||||||||||    
T  13108322 tgctgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 13108258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 38547386 - 38547450
Alignment:
Q  363 tgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    |||||||||| ||||||||||||  || |||| |||||| |||||| ||||||||||||||||||    
T  38547386 tgctgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 38547450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 31201269 - 31201178
Alignment:
Q  223 tcgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaattt 314  Q
    |||||| |||||||||||| ||||||||||||| | || | ||||||||||||||  |||||   |||||||||||  || |||||||||||    
T  31201269 tcgagtgaaccatcaatttagtccctgaattttcacgggtcggccaaattcgtccatcaattatgcgaaatatcaatttaatccctgaattt 31201178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 225 - 348
Target Start/End: Complemental strand, 42897898 - 42897775
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    |||| ||||||||| | ||||| |||||||||| || | ||||||||||||||| |||||    ||||||||||  |||||| |||||||||  || |||    
T  42897898 gagtgaaccatcaaatccgtccttgaatttttacgggtcggccaaattcgtccctcaattatgtgaaatatcaacttagtccttgaatttgtcagacgtc 42897799  T
Q  325 catcaatttcgtccctccgtccaa 348  Q
    ||||||    ||||||||||||||    
T  42897798 catcaaaaaggtccctccgtccaa 42897775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 366 - 427
Target Start/End: Original strand, 5036611 - 5036672
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    ||||||| ||||||||||||  || |||| |||||| |||||| ||||||||||||||||||    
T  5036611 tgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 5036672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 8609773 - 8609709
Alignment:
Q  363 tgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    |||||||||| ||||||||||||   | |||| |||||| |||||| ||||||||||||||||||    
T  8609773 tgctgtgttgtcttgtacacgtgtcgacaaggcagccacgtgtacaaggactaaattgatggaaa 8609709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 348
Target Start/End: Original strand, 11031452 - 11031552
Alignment:
Q  248 tgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtcca 347  Q
    ||||||| || |||| ||||||| |||| | ||||||   |||||||||||| |||| ||||| |||||   ||||| |||||||| |||||||||||||    
T  11031452 tgaatttgtaaggatgggccaaaatcgttctccaattatgcgaaatatcaaattagttcctgagtttgtcatatgtcaatcaatttagtccctccgtcca 11031551  T
Q  348 a 348  Q
    |    
T  11031552 a 11031552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 349
Target Start/End: Original strand, 28432293 - 28432345
Alignment:
Q  297 aaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaa 349  Q
    ||||||||||||||||||||   |||||| ||||||| |||||||||||||||    
T  28432293 aaaatagtccctgaatttgtaaaatgtccgtcaattttgtccctccgtccaaa 28432345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 422
Target Start/End: Complemental strand, 42897739 - 42897680
Alignment:
Q  363 tgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgat 422  Q
    |||||||||| ||||||||||||| || ||||||||||| ||| || ||||||| |||||    
T  42897739 tgctgtgttgtcttgtacacgtggcaagaaggaagccacgtgttcaaggactaatttgat 42897680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 362
Target Start/End: Complemental strand, 8609892 - 8609794
Alignment:
Q  264 ggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaaaggtccgttagtg 362  Q
    |||||||||||||||  ||||   ||||||||| |  ||||||||||||||    || |||||||||  | ||||||||||||||||| ||||||||||    
T  8609892 ggccaaattcgtccctgaattttgcgaaatatctatttagtccctgaattttacagacgtccatcaaaatggtccctccgtccaaaagctccgttagtg 8609794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 368 - 422
Target Start/End: Original strand, 8654663 - 8654717
Alignment:
Q  368 tgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgat 422  Q
    ||||| ||||||||||||| || ||||||||||||||| || ||||||| |||||    
T  8654663 tgttgtcttgtacacgtggcaagaaggaagccacatgttcaaggactaatttgat 8654717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 362
Target Start/End: Complemental strand, 13108417 - 13108343
Alignment:
Q  288 cgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaaaggtccgttagtg 362  Q
    |||||||||||| ||||||||||||||    || |||||||||  | ||||||||||||||||| | ||||||||    
T  13108417 cgaaatatcaaattagtccctgaattttacagacgtccatcaaaatggtccctccgtccaaaagcttcgttagtg 13108343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 362
Target Start/End: Original strand, 38547291 - 38547365
Alignment:
Q  288 cgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaaaggtccgttagtg 362  Q
    |||||||||||| ||||||||||||||    || |||||||||  | |||||||| |||||||| ||||||||||    
T  38547291 cgaaatatcaaattagtccctgaattttacagacgtccatcaaaatggtccctccatccaaaagctccgttagtg 38547365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 427
Target Start/End: Original strand, 42941947 - 42941997
Alignment:
Q  377 gtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    |||||||||  || |||| ||||||||||||| ||||||||||||||||||    
T  42941947 gtacacgtgtcaacaaggcagccacatgtacaaggactaaattgatggaaa 42941997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 330
Target Start/End: Complemental strand, 31823559 - 31823462
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaa 330  Q
    |||||| |||||||||||||||| | || | |||||| |||||||| |||||   |||||||||||  || ||||| ||||||||  ||||| |||||    
T  31823559 catcaacttcgtccctgaattttcacgggtcggccaacttcgtccctcaattatgcgaaatatcaatttaatccctaaatttgttaaatgtcaatcaa 31823462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 330
Target Start/End: Original strand, 40019164 - 40019261
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaa 330  Q
    |||||| ||||||  |||||||||| || | |||||| |||||||| |||||   |||||||||||  || ||||||||||||||  ||||| |||||    
T  40019164 catcaacttcgtctttgaatttttacgggtcggccaacttcgtccctcaattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaa 40019261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 157; Significance: 3e-83; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 225 - 436
Target Start/End: Original strand, 41944576 - 41944785
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||    
T  41944576 gagtaaaccatcaatttcgtccctgaattttcagggatcggccaaattcgtcccccaatttaacgaaatatcaaaatagtccctgaatttttttgacgtc 41944675  T
Q  325 catcaatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatgg 424  Q
     |  |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  41944676 ga--aatttcgtccttccgttcaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaaggaagccgcgtgtacagggactaaattgatgg 41944773  T
Q  425 aaaatgcgaaaa 436  Q
    ||||| ||||||    
T  41944774 aaaatacgaaaa 41944785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 484 - 573
Target Start/End: Original strand, 41944833 - 41944922
Alignment:
Q  484 acccctatgtttcccattaccatacatcctcacatttcatacataacacatcaactaagtccctgtctgttcttcttccctccattttca 573  Q
    |||||||||||| ||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| || ||||||||||||||||||    
T  41944833 acccctatgttttccattaccataaatcctcacattttatacagaacacatcaactaagtccctgtctttttttcttccctccattttca 41944922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 264 - 348
Target Start/End: Original strand, 30501156 - 30501240
Alignment:
Q  264 ggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaa 348  Q
    ||||||||||||||||||||| |||||||||||||||||||  ||||||||||   ||||| |||||||| ||||||||||||||    
T  30501156 ggccaaattcgtcccccaatttaacgaaatatcaaaatagtttctgaatttgtaaaatgtcaatcaatttagtccctccgtccaa 30501240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 233 - 345
Target Start/End: Complemental strand, 40963481 - 40963369
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatt 332  Q
    |||||| |||||||||||||||  | | || || ||||||||| |||||||| |||||||||| ||||||||||||||||||||   ||||| |||||||    
T  40963481 catcaacttcgtccctgaatttgcatgaatcggtcaaattcgttccccaatttaacgaaatatgaaaatagtccctgaatttgtaaaatgtcaatcaatt 40963382  T
Q  333 tcgtccctccgtc 345  Q
    | |||||||||||    
T  40963381 tagtccctccgtc 40963369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 225 - 349
Target Start/End: Complemental strand, 41946190 - 41946066
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    ||||||| ||||||||| || |||||||||  |  ||| || |||||| ||||| ||||| ||||||||||||||||||||| |||||||||   |||||    
T  41946190 gagtaaatcatcaatttggttcctgaatttgcactgatcggtcaaatttgtccctcaatttaacgaaatatcaaaatagtccatgaatttgtaaaatgtc 41946091  T
Q  325 catcaatttcgtccctccgtccaaa 349  Q
    | ||||||| |||||||||||||||    
T  41946090 cgtcaattttgtccctccgtccaaa 41946066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 288 - 359
Target Start/End: Original strand, 44794270 - 44794341
Alignment:
Q  288 cgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaaaggtccgtta 359  Q
    |||||||||||| ||||||||||||||    || ||||||||| ||||||||||||||||||||||||||||    
T  44794270 cgaaatatcaaattagtccctgaattttgcagaagtccatcaaattcgtccctccgtccaaaaggtccgtta 44794341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 359
Target Start/End: Complemental strand, 3152299 - 3152228
Alignment:
Q  288 cgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaaaggtccgtta 359  Q
    |||||||||||| ||||||||||||||    || ||||||||| | ||||||||||||||||||||||||||    
T  3152299 cgaaatatcaaattagtccctgaattttacagacgtccatcaaatccgtccctccgtccaaaaggtccgtta 3152228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 317
Target Start/End: Complemental strand, 48635467 - 48635372
Alignment:
Q  222 atcgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtt 317  Q
    ||||||| || ||||||||||||||||||||||| | |||| || ||||||||||||  ||||   |||||||||||  || ||||||||||||||    
T  48635467 atcgagtgaatcatcaatttcgtccctgaattttcacggatcggtcaaattcgtcccttaattatgcgaaatatcaatttaatccctgaatttgtt 48635372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 220 - 330
Target Start/End: Original strand, 23774147 - 23774257
Alignment:
Q  220 agatcgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttg 319  Q
    |||| |||| ||||||||| ||||||| |||||||| | |  | ||||||||||||||| |||||   |||||||||||  ||||||||||||||||  |    
T  23774147 agattgagtgaaccatcaaattcgtccttgaattttcacgagtcggccaaattcgtccctcaattatgcgaaatatcaatttagtccctgaatttgtcag 23774246  T
Q  320 atgtccatcaa 330  Q
    | |||||||||    
T  23774247 acgtccatcaa 23774257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 363 - 425
Target Start/End: Complemental strand, 31887417 - 31887355
Alignment:
Q  363 tgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatgga 425  Q
    |||||||||| ||||||||||||| ||||||||||||| |||| || ||||||| ||||||||    
T  31887417 tgctgtgttgtcttgtacacgtggcaaaaaggaagccatatgttcaaggactaatttgatgga 31887355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 2226138 - 2226074
Alignment:
Q  363 tgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    |||||||||| ||||||||||||  || |||| |||||| |||||| ||||||||||||||||||    
T  2226138 tgctgtgttgtcttgtacacgtgtcaacaaggtagccacgtgtacaaggactaaattgatggaaa 2226074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 361
Target Start/End: Complemental strand, 40509035 - 40508899
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    |||| ||||||||| ||||||| |||||||| | || | ||||||||||||||| |||||   |||||||||||  || ||| |||||||||  || |||    
T  40509035 gagtgaaccatcaaattcgtccttgaattttcacgggtcggccaaattcgtccctcaattatgcgaaatatcaacttaatccttgaatttgtcagacgtc 40508936  T
Q  325 catcaatttcgtccctccgtccaaaaggtccgttagt 361  Q
    ||||||    ||||||||||||||  | |||||||||    
T  40508935 catcaaaaatgtccctccgtccaagtgttccgttagt 40508899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 288 - 359
Target Start/End: Original strand, 2660275 - 2660346
Alignment:
Q  288 cgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaaaggtccgtta 359  Q
    |||||||||||| |||||| |||||||    || ||||||||| ||||||||||||||||||||||| ||||    
T  2660275 cgaaatatcaaattagtccttgaattttacagacgtccatcaaattcgtccctccgtccaaaaggtctgtta 2660346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 225 - 348
Target Start/End: Original strand, 48633877 - 48634000
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    |||| ||||||||| ||||||| |||||||| | || | || |||||||||||  |||||   |||||||||||  ||||||||||||||||  || |||    
T  48633877 gagtgaaccatcaaattcgtccttgaattttcacgggtcggtcaaattcgtccatcaattatgcgaaatatcaacttagtccctgaatttgtcagacgtc 48633976  T
Q  325 catcaatttcgtccctccgtccaa 348  Q
    ||||||    ||||||||||||||    
T  48633977 catcaaaaaggtccctccgtccaa 48634000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 366 - 427
Target Start/End: Complemental strand, 7884856 - 7884795
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    ||||||| ||||||||||||  || |||| ||||||||||| | ||||||||||||||||||    
T  7884856 tgtgttgtcttgtacacgtgtcaacaaggcagccacatgtataaggactaaattgatggaaa 7884795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 365 - 422
Target Start/End: Complemental strand, 23888735 - 23888678
Alignment:
Q  365 ctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgat 422  Q
    |||||||| ||||||| ||||| || ||||||||||||||| |||||||||| |||||    
T  23888735 ctgtgttgtcttgtacgcgtggcaagaaggaagccacatgttcagggactaatttgat 23888678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 233 - 330
Target Start/End: Original strand, 45897058 - 45897155
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaa 330  Q
    |||||| ||||||| |||||||||| || | |||||| |||||||| |||||   |||||||||||  || ||||||||||||||  ||||| |||||    
T  45897058 catcaacttcgtccttgaatttttacgggtcggccaacttcgtccctcaattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaa 45897155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 223 - 316
Target Start/End: Complemental strand, 51454376 - 51454283
Alignment:
Q  223 tcgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgt 316  Q
    |||||| ||||||||| ||||||| |||||||| | |||| |||||||||| | || |||||   |||||||||||| |||||  |||||||||    
T  51454376 tcgagtgaaccatcaaattcgtccttgaattttcacggatcggccaaattcattcctcaattatgcgaaatatcaaattagtctttgaatttgt 51454283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 366 - 427
Target Start/End: Complemental strand, 53190742 - 53190681
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    ||||||| ||||||||||||  || |||| |||||| |||||| ||||||||||||||||||    
T  53190742 tgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 53190681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 30599903 - 30599839
Alignment:
Q  363 tgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    |||||||||| ||||||||| ||  || |||| |||||| |||||| ||||||||||||||||||    
T  30599903 tgctgtgttgtcttgtacacatgtcaataaggcagccacgtgtacaaggactaaattgatggaaa 30599839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 426
Target Start/End: Complemental strand, 33113135 - 33113083
Alignment:
Q  374 cttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaa 426  Q
    ||||||||||||| |||||||||||||| ||| || ||||||| |||||||||    
T  33113135 cttgtacacgtggcaaaaaggaagccacgtgttcaaggactaatttgatggaa 33113083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 348
Target Start/End: Complemental strand, 31887576 - 31887453
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    |||| ||||||||| ||||||| |||||||| | |||| || |||||||  ||  |||||   |||||||||||  ||||||||||||||||  ||||||    
T  31887576 gagtgaaccatcaaattcgtccttgaattttcacggatcggtcaaattcaaccatcaattatgcgaaatatcaacttagtccctgaatttgtcagatgtc 31887477  T
Q  325 catcaatttcgtccctccgtccaa 348  Q
     |||||    ||||||||||||||    
T  31887476 tatcaaaaaggtccctccgtccaa 31887453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 362
Target Start/End: Complemental strand, 53190893 - 53190766
Alignment:
Q  235 tcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttc 334  Q
    |||| ||||||| |||||||| |   || |||||||||||||||  ||||   ||||||||| |  ||||||||||||||    || |||||||||  |     
T  53190893 tcaaattcgtccttgaattttaaaaaatcggccaaattcgtccctgaattttgcgaaatatctatttagtccctgaattttacagacgtccatcaaaatg 53190794  T
Q  335 gtccctccgtccaaaaggtccgttagtg 362  Q
    ||||||||||||||||| ||||||||||    
T  53190793 gtccctccgtccaaaagctccgttagtg 53190766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 427
Target Start/End: Complemental strand, 35905692 - 35905634
Alignment:
Q  369 gttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    |||| ||||||||||||  || |||| |||||| |||||| ||||||||||||||||||    
T  35905692 gttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 35905634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 427
Target Start/End: Original strand, 54898601 - 54898659
Alignment:
Q  369 gttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    |||| ||||||||||||  || |||| |||||| |||||| ||||||||||||||||||    
T  54898601 gttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 54898659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 427
Target Start/End: Original strand, 17515472 - 17515533
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    ||||||| ||||||||| ||  || |||| |||||| |||||| ||||||||||||||||||    
T  17515472 tgtgttgtcttgtacacttgtcaataaggcagccacgtgtacaaggactaaattgatggaaa 17515533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 427
Target Start/End: Complemental strand, 23293152 - 23293091
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    ||||||| | ||||||||||  || |||| |||||| |||||| ||||||||||||||||||    
T  23293152 tgtgttgtcatgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 23293091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 330
Target Start/End: Original strand, 23887206 - 23887303
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaa 330  Q
    |||||| ||||||| |||||||||| || | ||| || |||||||| |||||   |||||||||||  || ||||||||||||||  ||||| |||||    
T  23887206 catcaacttcgtccttgaatttttatgggtcggctaacttcgtccctcaattatgcgaaatatcaatttaatccctgaatttgttcaatgtcaatcaa 23887303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 330
Target Start/End: Original strand, 33111849 - 33111946
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaa 330  Q
    |||||| |||||||||||||||| | || | || ||||||| |||| |||||   |||||||||||  || ||||||||||||||  ||||| |||||    
T  33111849 catcaacttcgtccctgaattttcacggctcggtcaaattcatccctcaattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaa 33111946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 330
Target Start/End: Complemental strand, 33113304 - 33113199
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    |||| ||||||||| || |||| |||||||||| || | ||||||| || |||| |||||   |||||||||||  |||||||| |||||||  || |||    
T  33113304 gagtgaaccatcaaattagtccttgaatttttacgggtcggccaaaatcatccctcaattatgcgaaatatcaacttagtccctaaatttgtcagacgtc 33113205  T
Q  325 catcaa 330  Q
    ||||||    
T  33113204 catcaa 33113199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 427
Target Start/End: Original strand, 41977911 - 41977972
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    ||||||| ||||||||||||  || |||| || ||| |||||| ||||||||||||||||||    
T  41977911 tgtgttgtcttgtacacgtgtcaacaaggcagtcacgtgtacaaggactaaattgatggaaa 41977972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 374 - 422
Target Start/End: Original strand, 48634051 - 48634099
Alignment:
Q  374 cttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgat 422  Q
    ||||||||||||| |||||||||||||| ||| || ||||||| |||||    
T  48634051 cttgtacacgtggcaaaaaggaagccacgtgttcaaggactaatttgat 48634099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 148; Significance: 8e-78; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 225 - 436
Target Start/End: Complemental strand, 42620887 - 42620676
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    |||| ||||||||||||| |||| ||||||| |||| | ||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||| |||    
T  42620887 gagtcaaccatcaatttcatcccggaattttcaggggtcggccaaattcgtcccccaatttaaccaaatatcaaaatagtctctgaatttgtttgacgtc 42620788  T
Q  325 catcaatttcgtccctccgtccaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatgg 424  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||    
T  42620787 catcaatttcatccctccgttcaaaaggtccgttagtgtgctgtgttggcttgtacacgtgggaaaaagaaagccacgtgtatagggactaaattgatgg 42620688  T
Q  425 aaaatgcgaaaa 436  Q
    ||||| ||||||    
T  42620687 aaaatacgaaaa 42620676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 484 - 573
Target Start/End: Complemental strand, 42620628 - 42620539
Alignment:
Q  484 acccctatgtttcccattaccatacatcctcacatttcatacataacacatcaactaagtccctgtctgttcttcttccctccattttca 573  Q
    |||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||| | |||||||||||||||||||||||    
T  42620628 acccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccctatttgttcttcttccctccattttca 42620539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 233 - 349
Target Start/End: Complemental strand, 1344897 - 1344781
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatt 332  Q
    ||||||||||||||||||||||  | | || || |||||| |||||||||||  |||||||||||||||||||| |||||||||   ||||| |||||||    
T  1344897 catcaatttcgtccctgaatttgcatgaatcggtcaaatttgtcccccaattttacgaaatatcaaaatagtccttgaatttgtaaaatgtcaatcaatt 1344798  T
Q  333 tcgtccctccgtccaaa 349  Q
    | |||||||||||||||    
T  1344797 tagtccctccgtccaaa 1344781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 225 - 330
Target Start/End: Original strand, 38596868 - 38596973
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    |||| ||||||||| ||||||| |||||||||| || | ||||||||||||||| |||||   |||||||||||  ||||||||||||||||| || |||    
T  38596868 gagtgaaccatcaaattcgtccttgaatttttatgggtcggccaaattcgtccctcaattatgcgaaatatcaacttagtccctgaatttgttagacgtc 38596967  T
Q  325 catcaa 330  Q
    ||||||    
T  38596968 catcaa 38596973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 330
Target Start/End: Complemental strand, 32090008 - 32089911
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaa 330  Q
    |||||| |||||||||||||||||| || | |||||| |||||||| |||||   |||||||||||  || ||||||||||||||  ||||| |||||    
T  32090008 catcaacttcgtccctgaatttttacgggtcggccaacttcgtccctcaattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaa 32089911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 316
Target Start/End: Complemental strand, 43318186 - 43318093
Alignment:
Q  223 tcgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgt 316  Q
    |||||| ||||||||| ||||||| |||||||||| || | ||||||| || |||| |||||   |||||||||||  ||||||||||||||||    
T  43318186 tcgagtgaaccatcaaattcgtccttgaatttttatgggtcggccaaaatcatccctcaattatgcgaaatatcaacttagtccctgaatttgt 43318093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 17574476 - 17574540
Alignment:
Q  363 tgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    |||||||||| ||||||||||||  || |||| |||||| |||||| ||||||||||||||||||    
T  17574476 tgctgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 17574540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 268 - 349
Target Start/End: Original strand, 1343264 - 1343345
Alignment:
Q  268 aaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaa 349  Q
    |||||||||||  |||| ||| ||||||||||||||||  |||||||||   || || |||||||| |||||||||||||||    
T  1343264 aaattcgtcccttaatttaacaaaatatcaaaatagtctttgaatttgtaaaatatcaatcaatttagtccctccgtccaaa 1343345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 366 - 427
Target Start/End: Original strand, 7268004 - 7268065
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    ||||||| ||||||||||||  || |||| |||||| |||||| ||||||||||||||||||    
T  7268004 tgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 7268065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 233 - 330
Target Start/End: Original strand, 18726573 - 18726670
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaa 330  Q
    |||||| |||||||||||||||||| || ||  |||| |||||||| |||||   |||||||||||  |||||||| ||||||||  ||||| |||||    
T  18726573 catcaacttcgtccctgaatttttacgggttccccaacttcgtccctcaattatgcgaaatatcaatttagtcccttaatttgttaaatgtcaatcaa 18726670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 233 - 330
Target Start/End: Complemental strand, 33257843 - 33257746
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaa 330  Q
    |||||| |||||||||||||||||| || | |||||| ||||||||  ||||   |||||||||||  || ||||||||||||||  ||||| |||||    
T  33257843 catcaacttcgtccctgaatttttacgggtcggccaacttcgtcccttaattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaa 33257746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 240 - 317
Target Start/End: Original strand, 38176647 - 38176724
Alignment:
Q  240 ttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtt 317  Q
    |||||||||||||||| | || |||||||||||||||||  ||||   |||||||||||  || ||||||||||||||    
T  38176647 ttcgtccctgaattttcatgggttggccaaattcgtcccttaattatgcgaaatatcaatttaatccctgaatttgtt 38176724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 240 - 317
Target Start/End: Original strand, 38203871 - 38203948
Alignment:
Q  240 ttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtt 317  Q
    |||||||||||||||| | || |||||||||||||||||  ||||   |||||||||||  || ||||||||||||||    
T  38203871 ttcgtccctgaattttcatgggttggccaaattcgtcccttaattatgcgaaatatcaatttaatccctgaatttgtt 38203948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 317
Target Start/End: Complemental strand, 40330598 - 40330514
Alignment:
Q  233 catcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtt 317  Q
    |||||| |||||||||||||||| | || | ||||||| ||||||| |||||   |||||||||||  || ||||||||||||||    
T  40330598 catcaacttcgtccctgaattttcacgggtcggccaaaatcgtccctcaattatgcgaaatatcaatttaatccctgaatttgtt 40330514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 362
Target Start/End: Original strand, 17574328 - 17574455
Alignment:
Q  235 tcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttc 334  Q
    |||| ||||||| |||||||| |   || |||||||||||||||  ||||   ||||||||| |  ||||||||||||||    || |||||||||  |     
T  17574328 tcaaattcgtccttgaattttaaaaaatcggccaaattcgtccctgaattttgcgaaatatctatttagtccctgaattttacagacgtccatcaaaatg 17574427  T
Q  335 gtccctccgtccaaaaggtccgttagtg 362  Q
    ||||||||||||||||| ||||||||||    
T  17574428 gtccctccgtccaaaagctccgttagtg 17574455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 422
Target Start/End: Complemental strand, 18728567 - 18728508
Alignment:
Q  363 tgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgat 422  Q
    |||||||||| ||||||||||||| || ||||||||||| |||  ||||||||| |||||    
T  18728567 tgctgtgttgtcttgtacacgtggcaagaaggaagccacgtgttaagggactaatttgat 18728508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 359
Target Start/End: Complemental strand, 29621842 - 29621771
Alignment:
Q  288 cgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaaaggtccgtta 359  Q
    |||||||||||| ||||||||||||||    || ||||||||| |  |||||||||||||||| ||||||||    
T  29621842 cgaaatatcaaattagtccctgaattttgcagacgtccatcaaatcagtccctccgtccaaaatgtccgtta 29621771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 362
Target Start/End: Complemental strand, 30468394 - 30468267
Alignment:
Q  235 tcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttc 334  Q
    |||||||||||| |||||||| |   ||||| |||||||||| | |||||   ||||||||| |  |||||| |||||||    || |||||||||  |     
T  30468394 tcaatttcgtccttgaattttaaaaaattggtcaaattcgtctctcaattttgcgaaatatctatttagtccttgaattttacagacgtccatcaaaatg 30468295  T
Q  335 gtccctccgtccaaaaggtccgttagtg 362  Q
    ||||||||||||||||| ||||||||||    
T  30468294 gtccctccgtccaaaagctccgttagtg 30468267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 422
Target Start/End: Original strand, 32087673 - 32087732
Alignment:
Q  363 tgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgat 422  Q
    |||||||||| ||||||| ||||| || ||||||||||| ||| |||||||||| |||||    
T  32087673 tgctgtgttgtcttgtacgcgtggcaagaaggaagccacgtgttcagggactaatttgat 32087732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 348
Target Start/End: Original strand, 35395333 - 35395456
Alignment:
Q  225 gagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtc 324  Q
    |||| ||||||||| ||| |||||||||||| |    | |||||| |||||||| |||||   |||||||||||  |||| |||||||||||| || |||    
T  35395333 gagtgaaccatcaaattcatccctgaattttcacacgtcggccaacttcgtccctcaattatgcgaaatatcaatttagttcctgaatttgttagacgtc 35395432  T
Q  325 catcaatttcgtccctccgtccaa 348  Q
    ||||||    ||||||||||||||    
T  35395433 catcaaaaaggtccctccgtccaa 35395456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 422
Target Start/End: Original strand, 35395494 - 35395549
Alignment:
Q  367 gtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgat 422  Q
    |||||| ||||||| ||||| || ||||||||||||||| |||||||||| |||||    
T  35395494 gtgttgtcttgtacgcgtggcaagaaggaagccacatgttcagggactaatttgat 35395549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 359
Target Start/End: Complemental strand, 42473668 - 42473597
Alignment:
Q  288 cgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaaaggtccgtta 359  Q
    |||||||||||||||||||||||||||    || ||||||||| |  |||| ||||||||||| ||||||||    
T  42473668 cgaaatatcaaaatagtccctgaattttacagacgtccatcaaatcagtccttccgtccaaaatgtccgtta 42473597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 345
Target Start/End: Complemental strand, 6116946 - 6116868
Alignment:
Q  267 caaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtc 345  Q
    |||||| |||||||||||   ||||||| | ||||||||| |||||||||   ||||| ||||||||||||||| ||||    
T  6116946 caaatttgtcccccaatttgtcgaaatagccaaatagtccttgaatttgtcaaatgtcaatcaatttcgtcccttcgtc 6116868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 355
Target Start/End: Complemental strand, 2854382 - 2854321
Alignment:
Q  294 atcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaaaggtcc 355  Q
    |||||| ||||||||||||||    || ||||| ||| ||||||||||||||||||||||||    
T  2854382 atcaaattagtccctgaattttacagacgtccaacaaattcgtccctccgtccaaaaggtcc 2854321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 427
Target Start/End: Original strand, 27349333 - 27349369
Alignment:
Q  391 aaggaagccacatgtacagggactaaattgatggaaa 427  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  27349333 aaggaagccacgtgtacaaggactaaattgatggaaa 27349369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 314
Target Start/End: Original strand, 32835873 - 32835965
Alignment:
Q  222 atcgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaattt 314  Q
    ||||||| || |||||| |||||||||||||||| | || | || ||||||||||||  ||||   |||||||||||  || |||||||||||    
T  32835873 atcgagtgaatcatcaacttcgtccctgaattttcacgggtcggtcaaattcgtcccttaattatgcgaaatatcaatttaatccctgaattt 32835965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 330
Target Start/End: Original strand, 42619286 - 42619394
Alignment:
Q  222 atcgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaatttgtttgat 321  Q
    ||||||| || |||||| |||||||||||||||| | || | || ||| |||||||| |||||   |||||||||||  || |||| |||||||||  ||    
T  42619286 atcgagtgaatcatcaacttcgtccctgaattttcacgggtcggtcaatttcgtccctcaattatgcgaaatatcaatttaatcccagaatttgttaaat 42619385  T
Q  322 gtccatcaa 330  Q
    ||| |||||    
T  42619386 gtcaatcaa 42619394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 288 - 359
Target Start/End: Original strand, 3357 - 3428
Alignment:
Q  288 cgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaaaggtccgtta 359  Q
    |||||||||||| ||||||||||||||    || ||||||||| ||||||||||||||||||||||||||||    
T  3357 cgaaatatcaaattagtccctgaattttacagacgtccatcaaattcgtccctccgtccaaaaggtccgtta 3428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 288 - 359
Target Start/End: Original strand, 4529 - 4600
Alignment:
Q  288 cgaaatatcaaaatagtccctgaatttgtttgatgtccatcaatttcgtccctccgtccaaaaggtccgtta 359  Q
    |||||||||||| ||||||||||||||    || ||||||||| ||||||||||||||||||||||||||||    
T  4529 cgaaatatcaaattagtccctgaattttacagacgtccatcaaattcgtccctccgtccaaaaggtccgtta 4600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 6760 - 6669
Alignment:
Q  223 tcgagtaaaccatcaatttcgtccctgaatttttagggattggccaaattcgtcccccaattgaacgaaatatcaaaatagtccctgaattt 314  Q
    |||||| |||||||||||| ||||||||||||| | || | ||||||||||||||| |||||    ||||||||||  || |||||||||||    
T  6760 tcgagtgaaccatcaatttagtccctgaattttcacgggtcggccaaattcgtccctcaattatgtgaaatatcaatttaatccctgaattt 6669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1454 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1454
Description:

Target: scaffold1454; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 1421 - 1485
Alignment:
Q  363 tgctgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    |||||||||| ||||||||||||  || |||| | |||| |||||| ||||||||||||||||||    
T  1421 tgctgtgttgtcttgtacacgtgtcaacaaggcaaccacgtgtacaaggactaaattgatggaaa 1485  T

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Target: scaffold0564 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 427
Target Start/End: Original strand, 8422 - 8483
Alignment:
Q  366 tgtgttggcttgtacacgtgggaaaaaggaagccacatgtacagggactaaattgatggaaa 427  Q
    ||||||| ||||||||||||  || |||| |||||| |||||| | ||||||||||||||||    
T  8422 tgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaagtactaaattgatggaaa 8483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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