View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12081_low_5 (Length: 523)
Name: NF12081_low_5
Description: NF12081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12081_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 302 - 515
Target Start/End: Complemental strand, 41298544 - 41298331
Alignment:
| Q |
302 |
gaattacggatgaagaaagtgttcaaaaagccaagccctgagaattgaaacagaacgttcaggaagaccacgttgaggtctccaaggatgtgtttccatc |
401 |
Q |
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| T |
41298544 |
gaattacggatgaagaaagtgttcaaaaagccaagccctgagaattgaaacagaacgttcaggaagaccacgttgaggtctccaaggatgtgtttccatc |
41298445 |
T |
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| Q |
402 |
atgttgatttgttgaaatgctctttgttgtctcaaaactctgtcaagtattttaagcctaggtgtttcaccctttgttgttccaggtgcaacagggtctt |
501 |
Q |
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| T |
41298444 |
atgttgatttgttgaaatgctctttgttgtctcaaaactctgtcaagtattttaagcctaggtgtttcaccctttgttgttccaggtgcaacagggtctt |
41298345 |
T |
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| Q |
502 |
tttctccctttgct |
515 |
Q |
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| T |
41298344 |
tttctcccattgct |
41298331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 41298836 - 41298582
Alignment:
| Q |
17 |
acaacatacatatgaaaagatggaatctgaatggtgatgcacagaaactaacnnnnnnn--tgcgtaggatataattttttatatttgttgaagcacatt |
114 |
Q |
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| T |
41298836 |
acaacatacatatgaaaagatggaatctgaatggtgatgcacagaaactaacaaaaaaaaatgcgtaggatataattttttatatttgttgaagcacatt |
41298737 |
T |
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| Q |
115 |
aatgtaaaagattcttgatatgagaaaacttacgataccataacacaactgccaatagttgnnnnnnnnnnnngaaatggagacaacattgattctttag |
214 |
Q |
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| T |
41298736 |
aatgtaaaagattcttgatatgagaaaacttacgataccataacacaactgccaatagttgtttttattttttgaaatggagacaacattgattctttag |
41298637 |
T |
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| Q |
215 |
aaaaatgtattttgtaccttacttctattagaactacttacttgaacatagaaag |
269 |
Q |
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| T |
41298636 |
aaaaatgtattttgtaccttacttctattagaactacttacttgaacatagaaag |
41298582 |
T |
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