View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12081_low_6 (Length: 501)

Name: NF12081_low_6
Description: NF12081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12081_low_6
NF12081_low_6
[»] chr2 (31 HSPs)
chr2 (1-484)||(38564427-38564915)
chr2 (384-482)||(38607966-38608064)
chr2 (256-339)||(29513978-29514060)
chr2 (255-339)||(44804013-44804097)
chr2 (256-339)||(792314-792397)
chr2 (256-339)||(4092126-4092209)
chr2 (256-339)||(14565331-14565414)
chr2 (256-339)||(21539872-21539955)
chr2 (256-339)||(29514433-29514516)
chr2 (256-339)||(38549601-38549684)
chr2 (256-339)||(10979284-10979367)
chr2 (264-339)||(35832527-35832602)
chr2 (256-339)||(38071408-38071491)
chr2 (381-484)||(38582781-38582885)
chr2 (256-339)||(5091498-5091581)
chr2 (256-339)||(10478293-10478376)
chr2 (256-339)||(15858647-15858730)
chr2 (256-338)||(43075865-43075947)
chr2 (256-339)||(8784510-8784594)
chr2 (256-339)||(33635451-33635534)
chr2 (162-226)||(38564009-38564073)
chr2 (381-484)||(38616583-38616687)
chr2 (256-339)||(43451620-43451703)
chr2 (256-324)||(28424403-28424471)
chr2 (264-339)||(28492635-28492710)
chr2 (160-226)||(22898048-22898114)
chr2 (171-216)||(18788256-18788301)
chr2 (162-233)||(27530196-27530267)
chr2 (266-307)||(13822735-13822776)
chr2 (256-339)||(18833867-18833951)
chr2 (180-223)||(44021769-44021813)
[»] chr3 (38 HSPs)
chr3 (256-339)||(13541349-13541432)
chr3 (256-339)||(32322160-32322243)
chr3 (258-339)||(46580651-46580732)
chr3 (256-339)||(21654361-21654444)
chr3 (256-339)||(37324004-37324087)
chr3 (256-339)||(55400854-55400937)
chr3 (256-339)||(26641033-26641116)
chr3 (256-339)||(31126328-31126411)
chr3 (264-339)||(34022715-34022790)
chr3 (256-339)||(53020299-53020382)
chr3 (257-339)||(49068167-49068249)
chr3 (162-233)||(37521858-37521928)
chr3 (162-233)||(43021622-43021693)
chr3 (256-339)||(46295997-46296080)
chr3 (256-339)||(51426735-51426818)
chr3 (163-233)||(43020037-43020107)
chr3 (265-339)||(43576073-43576147)
chr3 (159-212)||(9011842-9011895)
chr3 (271-339)||(28793278-28793346)
chr3 (259-339)||(45347637-45347717)
chr3 (264-339)||(46820150-46820225)
chr3 (256-337)||(23514559-23514641)
chr3 (256-313)||(16739086-16739143)
chr3 (258-339)||(51255302-51255383)
chr3 (266-339)||(36188937-36189010)
chr3 (268-319)||(1335246-1335297)
chr3 (161-232)||(8237740-8237811)
chr3 (158-233)||(24516004-24516079)
chr3 (266-339)||(51309529-51309603)
chr3 (161-222)||(42486319-42486380)
chr3 (255-340)||(46303693-46303778)
chr3 (256-339)||(52252152-52252232)
chr3 (181-233)||(8993667-8993719)
chr3 (180-232)||(36656886-36656938)
chr3 (264-312)||(45782321-45782369)
chr3 (287-340)||(30612293-30612346)
chr3 (190-226)||(8993776-8993812)
chr3 (180-224)||(45715326-45715370)
[»] chr8 (31 HSPs)
chr8 (256-339)||(11044175-11044258)
chr8 (256-339)||(27621248-27621331)
chr8 (256-339)||(27752704-27752787)
chr8 (256-339)||(35260175-35260258)
chr8 (256-340)||(24612437-24612524)
chr8 (258-339)||(44411171-44411252)
chr8 (158-238)||(24409219-24409299)
chr8 (256-339)||(31132991-31133072)
chr8 (256-339)||(3100071-3100154)
chr8 (256-339)||(11992846-11992929)
chr8 (256-336)||(39187351-39187431)
chr8 (256-339)||(37598187-37598270)
chr8 (264-339)||(44052739-44052814)
chr8 (256-337)||(25321546-25321627)
chr8 (264-339)||(35344485-35344561)
chr8 (180-233)||(38214637-38214690)
chr8 (256-339)||(12108273-12108357)
chr8 (256-319)||(32678477-32678541)
chr8 (256-339)||(34713646-34713729)
chr8 (256-318)||(37566457-37566519)
chr8 (258-339)||(35346267-35346347)
chr8 (177-241)||(41829473-41829538)
chr8 (266-337)||(2238565-2238636)
chr8 (177-223)||(5180932-5180978)
chr8 (266-337)||(24510667-24510738)
chr8 (277-340)||(36538175-36538238)
chr8 (178-216)||(29760894-29760932)
chr8 (266-339)||(41426457-41426530)
chr8 (177-222)||(18030390-18030435)
chr8 (182-234)||(5182235-5182287)
chr8 (287-339)||(27740720-27740772)
[»] chr7 (36 HSPs)
chr7 (256-339)||(18206236-18206319)
chr7 (256-339)||(41889285-41889368)
chr7 (256-339)||(3157550-3157633)
chr7 (256-339)||(35181306-35181389)
chr7 (256-339)||(43107822-43107905)
chr7 (257-339)||(19932973-19933055)
chr7 (258-339)||(48879502-48879583)
chr7 (255-339)||(44600560-44600644)
chr7 (256-339)||(23106567-23106650)
chr7 (256-339)||(40560496-40560579)
chr7 (258-339)||(22111248-22111330)
chr7 (258-339)||(40583259-40583341)
chr7 (261-339)||(41815615-41815693)
chr7 (256-339)||(7989224-7989308)
chr7 (256-319)||(21654038-21654101)
chr7 (256-340)||(9818581-9818665)
chr7 (256-340)||(10720506-10720590)
chr7 (256-339)||(42617785-42617869)
chr7 (258-339)||(45599019-45599102)
chr7 (264-339)||(32491032-32491107)
chr7 (256-339)||(47383520-47383603)
chr7 (177-233)||(43071712-43071768)
chr7 (256-339)||(29235986-29236068)
chr7 (257-339)||(41890162-41890243)
chr7 (169-232)||(24252326-24252389)
chr7 (266-337)||(30082467-30082538)
chr7 (162-232)||(7579328-7579398)
chr7 (286-339)||(36576531-36576583)
chr7 (177-232)||(9136749-9136804)
chr7 (288-339)||(34808333-34808384)
chr7 (256-307)||(40593964-40594015)
chr7 (266-308)||(18800694-18800736)
chr7 (256-339)||(23731674-23731759)
chr7 (162-204)||(41554589-41554631)
chr7 (162-207)||(7567778-7567823)
chr7 (256-339)||(35084017-35084101)
[»] chr4 (33 HSPs)
chr4 (256-339)||(39969914-39969997)
chr4 (256-339)||(10591428-10591511)
chr4 (256-339)||(29180337-29180420)
chr4 (260-340)||(49902138-49902218)
chr4 (256-339)||(30776409-30776492)
chr4 (256-339)||(38187653-38187736)
chr4 (256-339)||(53677404-53677487)
chr4 (264-339)||(37788563-37788638)
chr4 (256-339)||(43980610-43980693)
chr4 (257-339)||(3043093-3043175)
chr4 (257-339)||(28681771-28681853)
chr4 (256-339)||(30777599-30777683)
chr4 (264-339)||(9798008-9798083)
chr4 (256-339)||(29899827-29899910)
chr4 (256-339)||(50768557-50768640)
chr4 (256-339)||(51495261-51495343)
chr4 (256-339)||(55937628-55937711)
chr4 (257-339)||(47807307-47807388)
chr4 (255-339)||(32012250-32012335)
chr4 (162-233)||(35603173-35603244)
chr4 (176-233)||(49605908-49605965)
chr4 (177-233)||(30925382-30925438)
chr4 (177-233)||(30926000-30926056)
chr4 (162-212)||(5371034-5371084)
chr4 (286-339)||(38940981-38941034)
chr4 (256-339)||(1620141-1620225)
chr4 (162-233)||(24549936-24550007)
chr4 (153-208)||(46333843-46333897)
chr4 (266-339)||(5222227-5222301)
chr4 (159-233)||(19655641-19655715)
chr4 (256-310)||(51495369-51495422)
chr4 (261-339)||(27750275-27750356)
chr4 (158-222)||(49605317-49605381)
[»] chr5 (28 HSPs)
chr5 (255-339)||(16286041-16286125)
chr5 (256-339)||(8541523-8541606)
chr5 (256-339)||(30086505-30086589)
chr5 (256-339)||(8145972-8146055)
chr5 (161-232)||(19516606-19516677)
chr5 (256-339)||(25962407-25962490)
chr5 (256-339)||(31316760-31316843)
chr5 (256-339)||(35462678-35462761)
chr5 (264-339)||(20914976-20915051)
chr5 (265-339)||(31690588-31690662)
chr5 (258-339)||(13146846-13146927)
chr5 (255-339)||(12639006-12639089)
chr5 (255-339)||(24432358-24432442)
chr5 (162-233)||(34799977-34800048)
chr5 (256-339)||(42365152-42365235)
chr5 (157-233)||(2807992-2808068)
chr5 (280-339)||(37066206-37066265)
chr5 (158-233)||(19986845-19986920)
chr5 (256-339)||(36413895-36413978)
chr5 (162-212)||(20454505-20454555)
chr5 (162-199)||(19516171-19516208)
chr5 (158-233)||(3957304-3957378)
chr5 (257-339)||(24439689-24439771)
chr5 (193-233)||(3959690-3959730)
chr5 (266-307)||(2002104-2002145)
chr5 (258-339)||(8144051-8144132)
chr5 (279-311)||(20452416-20452448)
chr5 (162-222)||(30772764-30772824)
[»] chr1 (43 HSPs)
chr1 (256-339)||(23873789-23873872)
chr1 (157-233)||(10765765-10765841)
chr1 (256-339)||(18852338-18852421)
chr1 (264-339)||(28017771-28017846)
chr1 (256-339)||(35941956-35942039)
chr1 (256-339)||(49924534-49924617)
chr1 (255-340)||(35189315-35189401)
chr1 (255-339)||(38942401-38942486)
chr1 (258-339)||(43656001-43656082)
chr1 (256-339)||(40220171-40220257)
chr1 (256-339)||(25990863-25990946)
chr1 (256-339)||(26907053-26907136)
chr1 (256-339)||(46949436-46949519)
chr1 (257-339)||(44875294-44875376)
chr1 (258-339)||(9128158-9128239)
chr1 (258-339)||(15285918-15285998)
chr1 (255-339)||(26479854-26479939)
chr1 (258-339)||(31970273-31970354)
chr1 (256-339)||(18913306-18913390)
chr1 (169-233)||(38832847-38832911)
chr1 (256-339)||(18036659-18036742)
chr1 (264-339)||(28916486-28916560)
chr1 (264-339)||(40935583-40935658)
chr1 (268-339)||(47997069-47997140)
chr1 (256-339)||(45357837-45357922)
chr1 (258-339)||(40960438-40960519)
chr1 (177-233)||(5494117-5494173)
chr1 (255-339)||(15311292-15311376)
chr1 (256-336)||(29488866-29488946)
chr1 (157-226)||(3346665-3346734)
chr1 (258-330)||(4529300-4529371)
chr1 (256-339)||(39026207-39026291)
chr1 (177-226)||(39015485-39015534)
chr1 (178-233)||(3346046-3346101)
chr1 (177-233)||(5493280-5493336)
chr1 (162-233)||(12214991-12215062)
chr1 (256-324)||(36037367-36037435)
chr1 (176-218)||(5489596-5489638)
chr1 (289-339)||(35884326-35884376)
chr1 (264-339)||(6848280-6848354)
chr1 (256-339)||(36384043-36384126)
chr1 (177-206)||(5491495-5491524)
chr1 (177-225)||(18969961-18970009)
[»] scaffold0495 (1 HSPs)
scaffold0495 (256-338)||(4746-4828)
[»] chr6 (18 HSPs)
chr6 (256-338)||(10228028-10228110)
chr6 (256-339)||(17721768-17721851)
chr6 (256-339)||(5121415-5121498)
chr6 (265-339)||(12278821-12278895)
chr6 (256-339)||(374214-374297)
chr6 (162-233)||(16260790-16260861)
chr6 (162-241)||(16263986-16264065)
chr6 (264-339)||(30766561-30766636)
chr6 (162-233)||(11313985-11314056)
chr6 (264-339)||(30949250-30949325)
chr6 (179-232)||(11589343-11589396)
chr6 (256-302)||(17599464-17599510)
chr6 (256-324)||(31887079-31887148)
chr6 (177-232)||(6052511-6052566)
chr6 (162-233)||(16242170-16242241)
chr6 (256-339)||(32882650-32882733)
chr6 (297-339)||(17598408-17598450)
chr6 (177-233)||(11308277-11308333)
[»] scaffold0486 (1 HSPs)
scaffold0486 (191-233)||(1519-1561)
[»] scaffold0010 (2 HSPs)
scaffold0010 (162-212)||(155337-155387)
scaffold0010 (180-222)||(157319-157361)
[»] scaffold0112 (1 HSPs)
scaffold0112 (177-233)||(24967-25023)


Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 38564427 - 38564915
Alignment:
Q  1 tgatgatataagttgaactttgtcgaattagataaaaagatgatctcacgtcggcaaacatcaagaaagatgatttgtttatttnnnnnnnntaaatgaa 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||        ||||||||    
T  38564427 tgatgatataagttgaactttgtcgaactagataaaaagatgatctcacgtgggcaaacatcaagaaagatgatttgtttatttaaaaaaa-taaatgaa 38564525  T
Q  101 attcaatgtcaattacaattatacccattagttaaagttgttttggaataaaaaagatggttttttagtaaaaactaagtgggagtaggcttgctaactt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||  |||||||||||    
T  38564526 attcaatgtcaattacaattatacccattagttaaagttgttttggaaaaaaaaagatgg-tttttagtaaaaattaagtgggagtaaccttgctaactt 38564624  T
Q  201 actccttcatgtttttgggtgggagtgagttagtagctcccnnnnnnnnnnnnctcctccgttctaatttataagcaaaaaacagtaattcacacttatt 300  Q
    |||||||||||||||| ||||| ||| |||||| | | |||              ||||||| ||||||||||| ||||||||  |||||||||||||||    
T  38564625 actccttcatgtttttaggtggaagtaagttagcatccccctatatactc-----cctccgtcctaatttataaacaaaaaacgataattcacacttatt 38564719  T
Q  301 aagaaaattaacacttagtaatttaaggtataattttttacttatattttaagacggagagagnnnnnnnnnnnnnnnngtctt-------aacaatatt 393  Q
    ||||||| ||||| ||||| |||| |||||||||||| | |||||||||||  |||||| |||                 ||||       |||||||||    
T  38564720 aagaaaactaacatttagtgatttgaggtataattttgtgcttatattttagcacggagggagtatatatatatatatattctttagtcttaacaatatt 38564819  T
Q  394 ttgcaaaggaatcaattaacccttca-----acattgagaaacttaattgcgaatggtttgttttctgatttgattattactcttaatgtagattc 484  Q
    ||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38564820 ttgcaaaggaatcaattaacccttcaacattacattgagaaacttaattgcgaatggtttgttttctgatttgattattactcttaatgtagattc 38564915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 384 - 482
Target Start/End: Original strand, 38607966 - 38608064
Alignment:
Q  384 taacaatattttgcaaaggaatcaattaacccttcaacattgagaaacttaattgcgaatggtttgttttctgatttgattattactcttaatgtagat 482  Q
    |||||||||||||||||||||||||||| | ||| |||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||||||||    
T  38607966 taacaatattttgcaaaggaatcaattacctctttaacattgagaaacttagttgggaatggtttattttctgatttgattattacttttaatgtagat 38608064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 29513978 - 29514060
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  29513978 cctccgtcctaatttataagcaaaaaacagtaattcacacttattaagaaaa-taacacttagtaatttgaggtataatttttt 29514060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 255 - 339
Target Start/End: Complemental strand, 44804097 - 44804013
Alignment:
Q  255 tcctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  44804097 tcctccgtcctaatttataagcaaacaacattaattcacacttattaagaaaattaacacttagtgatttgaggtataatttttt 44804013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 792314 - 792397
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  792314 cctccgtcctaatttataagcaaaaaacactaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 792397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 4092209 - 4092126
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  4092209 cctccgttctaatttataagcaaaaaacactacttcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 4092126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 14565331 - 14565414
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  14565331 cctccgtcctaatttataagcaaaaaacattaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 14565414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 21539955 - 21539872
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  21539955 cctccgtcctaatttataagcaaaaaacactaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 21539872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 29514433 - 29514516
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||| ||||||||||||||    
T  29514433 cctccgtcctaatttataagcaaaaaacagtaattcatacttattaaaaaaactaacacttagtaatttgaggtataatttttt 29514516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 38549601 - 38549684
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  38549601 cctctgttctaatttataagcaaaaaacactaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 38549684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 10979367 - 10979284
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| |||| ||||||||||||||    
T  10979367 cctccgtcctaatttataagcaaaaaacactaattcacactcattaagaaaactaacacttagtgatttgaggtataatttttt 10979284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 339
Target Start/End: Complemental strand, 35832602 - 35832527
Alignment:
Q  264 ctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  35832602 ctaatttataagcaaaaaacactaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 35832527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 38071408 - 38071491
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| | ||||||||||||    
T  38071408 cctccgtcctaatttataagcaaaaaacactaattcacacttattaagaaaactaacacttagtgatttgaagtataatttttt 38071491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 381 - 484
Target Start/End: Original strand, 38582781 - 38582885
Alignment:
Q  381 tcttaacaatattttgcaaaggaatcaattaacc-cttcaacattgagaaacttaattgcgaatggtttgttttctgatttgattattactcttaatgta 479  Q
    |||||||||||||||||||||||||||||||| | ||| |||||| |||||||||| |  ||||| ||||||||||||||||||||||||| || ||| |    
T  38582781 tcttaacaatattttgcaaaggaatcaattaagctcttaaacattaagaaacttaagtatgaatgatttgttttctgatttgattattacttttgatgca 38582880  T
Q  480 gattc 484  Q
    |||||    
T  38582881 gattc 38582885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 5091498 - 5091581
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||||| |||||||||||||||||| | |||||||||||||||||||||| ||||||||||| |||| || |||||||||||    
T  5091498 cctccgttttaatttataagcaaaaaatactaattcacacttattaagaaaactaacacttagtgatttgagatataatttttt 5091581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 10478376 - 10478293
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| | || || |||||||||||    
T  10478376 cctccgtcctaatttataagcaaaaaacattaattcacacttattaagaaaactaacacttagtgagttgagatataatttttt 10478293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 15858647 - 15858730
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| ||||||||| |||||||||||| ||| ||||||| |||| ||||||||||||||    
T  15858647 cctccgtcctaatttataagcaaaaaacactaattcacatttattaagaaaactaatacttagtgatttgaggtataatttttt 15858730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 256 - 338
Target Start/End: Complemental strand, 43075947 - 43075865
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataattttt 338  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| |||| |||| ||||||||    
T  43075947 cctccgtcctaatttataagcaaaaaatactaattcacacttattaagaaaactaacacttagtgatttgaggtgtaattttt 43075865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 8784594 - 8784510
Alignment:
Q  256 cctccgttctaatttataagcaaaaaa-cagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||||| |||||||||||||||||| || ||||||| |||||||||||||| ||||||||||| |||| ||||||||||||||    
T  8784594 cctccgttttaatttataagcaaaaaaacattaattcatacttattaagaaaactaacacttagtgatttgaggtataatttttt 8784510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 33635534 - 33635451
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||| | ||||| |||| || |||||||||||    
T  33635534 cctccgtcctaatttataagcaaaaaacactaattcacacttattaagaaaactaatatttagtgatttgagatataatttttt 33635451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 38564073 - 38564009
Alignment:
Q  162 tttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagt 226  Q
    |||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| ||||    
T  38564073 tttttagtaaaaaccaagtgggagtaggcttgttaccttactccttcatgtttttgggtgagagt 38564009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 381 - 484
Target Start/End: Complemental strand, 38616687 - 38616583
Alignment:
Q  381 tcttaacaatattttgcaaaggaatcaattaa-cccttcaacattgagaaacttaattgcgaatggtttgttttctgatttgattattactcttaatgta 479  Q
    |||||||||||||||||||||||||||||||| | ||||||||||  ||||| ||||   ||| | ||||||||||||||||||||||||| || ||| |    
T  38616687 tcttaacaatattttgcaaaggaatcaattaagctcttcaacattatgaaacataatgatgaacgatttgttttctgatttgattattacttttgatgca 38616588  T
Q  480 gattc 484  Q
    |||||    
T  38616587 gattc 38616583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 43451703 - 43451620
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||| | ||||||| |||||||||||||| ||||| ||||| |||| |||||| |||||||    
T  43451703 cctccgtcctaatttataagcaaaaaatactaattcatacttattaagaaaactaacatttagtgatttgaggtatgatttttt 43451620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 28424471 - 28424403
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaattt 324  Q
    ||||||| ||||||||||||||||||||| ||||| | |||||||||||||| ||||||||||| ||||    
T  28424471 cctccgtcctaatttataagcaaaaaacactaattgatacttattaagaaaactaacacttagtgattt 28424403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 264 - 339
Target Start/End: Complemental strand, 28492710 - 28492635
Alignment:
Q  264 ctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||||||||||||||| || ||| |||||||||||||||||| ||||||||| | |||| || |||||||||||    
T  28492710 ctaatttataagcaaaaagcactaaatcacacttattaagaaaactaacacttaatgatttgagatataatttttt 28492635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 22898114 - 22898048
Alignment:
Q  160 gttttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagt 226  Q
    |||||||||  ||||  |||||| |||||||||| |||||||||||||||||||||| |||||||||    
T  22898114 gttttttagagaaaagcaagtggaagtaggcttgttaacttactccttcatgtttttaggtgggagt 22898048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 18788256 - 18788301
Alignment:
Q  171 aaaactaagtgggagtaggcttgctaacttactccttcatgttttt 216  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||    
T  18788256 aaaagtaagtgggagtaggcttgctaacttactctttcatgttttt 18788301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 27530196 - 27530267
Alignment:
Q  162 tttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    ||||||||||||   |||||| ||||  |||||| | |||||||||||||||||||||||||||| ||||||    
T  27530196 tttttagtaaaatgcaagtggaagtaaccttgctcagttactccttcatgtttttgggtgggagtaagttag 27530267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 13822735 - 13822776
Alignment:
Q  266 aatttataagcaaaaaacagtaattcacacttattaagaaaa 307  Q
    ||||||||||||||||| |  |||||||||||||||||||||    
T  13822735 aatttataagcaaaaaatacaaattcacacttattaagaaaa 13822776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 18833867 - 18833951
Alignment:
Q  256 cctccgttctaatttataagc-aaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||| |||||| |  | ||||||||||||||||||  ||| |  | ||||||| ||||||||||||||    
T  18833867 cctccgtcctaatttataagcaaaaaaatacaatttcacacttattaagaaagctaaaatattgtaatttgaggtataatttttt 18833951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 44021769 - 44021813
Alignment:
Q  180 tgggagtaggctt-gctaacttactccttcatgtttttgggtggg 223  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||||    
T  44021769 tgggagtaggctttgctaacttactccttcatatttttaggtggg 44021813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 13541432 - 13541349
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13541432 cctccgttctaatttataaccaaaaaacactaattcacacttattaagaaaattaacacttagtaatttgaggtataatttttt 13541349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 32322160 - 32322243
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  32322160 cctccgtcctaatttataagcaaaaaacactaattcacacttattaagaaaattaacacttagtgatttgaggtataatttttt 32322243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 258 - 339
Target Start/End: Complemental strand, 46580732 - 46580651
Alignment:
Q  258 tccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  46580732 tccgttctaatttataagcaaaaaacactaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 46580651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 21654444 - 21654361
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  21654444 cctccgtcctaatttataagcaaaaaacactaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 21654361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 37324004 - 37324087
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| || |||||||||||    
T  37324004 cctccgttctaatttataagcaaaaaacactaattcacacttattaagaaaactaacacttagtgatttgagatataatttttt 37324087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 55400937 - 55400854
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  55400937 cctccgtcctaatttataagcaaaaaacactaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 55400854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 26641033 - 26641116
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| || |||||||||||    
T  26641033 cctccgtcctaatttataagcaaaaaacactaattcacacttattaagaaaactaacacttagtgatttgagatataatttttt 26641116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 31126411 - 31126328
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  31126411 cctctgttttaatttataagcaaaaaacactaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 31126328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 264 - 339
Target Start/End: Complemental strand, 34022790 - 34022715
Alignment:
Q  264 ctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| |||| ||||||||||||||    
T  34022790 ctaatttataagcaaaaaacactaattcacacttattaagaaaactaatacttagtgatttgaggtataatttttt 34022715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 53020382 - 53020299
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||| |||| || |||||||||||    
T  53020382 cctccgtcctaatttataagcaaaaaacactaattcacacttattaagaaaactaacatttagtgatttgagttataatttttt 53020299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 257 - 339
Target Start/End: Complemental strand, 49068249 - 49068167
Alignment:
Q  257 ctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||| ||||||||||||||||||| | ||||||||| |||||||||||| ||||||||||| |||| || |||||||||||    
T  49068249 ctccgtcctaatttataagcaaaaaatattaattcacatttattaagaaaactaacacttagtgatttgagatataatttttt 49068167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 37521928 - 37521858
Alignment:
Q  162 tttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    ||||||||||||   ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  37521928 tttttagtaaaatacaagtgggagtagg-ttgctaacttactccttcatgtttttgggtgggagtaagttag 37521858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 43021622 - 43021693
Alignment:
Q  162 tttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    ||||||||||||  |||||||| ||||||||||||||||||||||||||||||||  |||||||| ||||||    
T  43021622 tttttagtaaaaggtaagtgggtgtaggcttgctaacttactccttcatgtttttaagtgggagtaagttag 43021693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 46295997 - 46296080
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| |||||||||||| |||||| | |||||||||||||||||||||| ||||  ||||| |||| ||||||||||||||    
T  46295997 cctccgtcctaatttataagtaaaaaatactaattcacacttattaagaaaactaacggttagtgatttgaggtataatttttt 46296080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 51426818 - 51426735
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| ||||| || |||||||| |||| ||||| ||||| |||| ||||||||||||||    
T  51426818 cctccgtcctaatttataagcaaaaaacactaatttacgcttattaaaaaaactaacatttagtgatttgaggtataatttttt 51426735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 43020107 - 43020037
Alignment:
Q  163 ttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    |||||||||||   ||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||    
T  43020107 ttttagtaaaagacaagtgggagtatgcttgctaacttactccttcatgtttttaggtgggagtaagttag 43020037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 265 - 339
Target Start/End: Complemental strand, 43576147 - 43576073
Alignment:
Q  265 taatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||  |||||||| ||||||| |||||||||||||||||||||||||| |||| |||||| |||||||    
T  43576147 taatttataactaaaaaacactaattcatacttattaagaaaattaacacttagtgatttgaggtatgatttttt 43576073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 9011895 - 9011842
Alignment:
Q  159 ggttttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgt 212  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  9011895 ggttttttggtaaaaactaagtgggagtagacttgctaacttactccttcatgt 9011842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 271 - 339
Target Start/End: Complemental strand, 28793346 - 28793278
Alignment:
Q  271 ataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||| |||||| | |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  28793346 ataagtaaaaaataataattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 28793278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 259 - 339
Target Start/End: Original strand, 45347637 - 45347717
Alignment:
Q  259 ccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||| |||||||||||| |||||||| ||||||| | |||||||||||| ||||||||||| |||| |||||| |||||||    
T  45347637 ccgtcctaatttataagtaaaaaacactaattcatatttattaagaaaactaacacttagtgatttgaggtatgatttttt 45347717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 264 - 339
Target Start/End: Complemental strand, 46820225 - 46820150
Alignment:
Q  264 ctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||||||||| ||||| || ||||||||| |||||||||||| ||||||||||| |||| |||||| |||||||    
T  46820225 ctaatttataagtaaaaaccactaattcacatttattaagaaaactaacacttagtgatttgaggtatgatttttt 46820150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 256 - 337
Target Start/End: Complemental strand, 23514641 - 23514559
Alignment:
Q  256 cctccgttctaatttataagcaaaaaa-cagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttt 337  Q
    |||||||  |||||||||||||||||| || ||||||||| |||||||||||| ||||||||| | |||| ||||||||||||    
T  23514641 cctccgtcttaatttataagcaaaaaaacattaattcacatttattaagaaaactaacacttattgatttgaggtataatttt 23514559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 313
Target Start/End: Original strand, 16739086 - 16739143
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaaca 313  Q
    ||||||| ||||||||||||| ||||||| |||||||||||||||||||||| |||||    
T  16739086 cctccgtcctaatttataagccaaaaacactaattcacacttattaagaaaactaaca 16739143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 339
Target Start/End: Complemental strand, 51255383 - 51255302
Alignment:
Q  258 tccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||| ||||||||||||||||||| | ||||||| | |||||||||||| |||||| ||||||| | | ||||||||||||    
T  51255383 tccgtcctaatttataagcaaaaaatattaattcatatttattaagaaaactaacacgtagtaatatgaagtataatttttt 51255302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 339
Target Start/End: Original strand, 36188937 - 36189010
Alignment:
Q  266 aatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||||||||||||||||  ||||||||||||||||||||  ||| ||  |||||||| ||||||| ||||||    
T  36188937 aatttataagcaaaaaacacaaattcacacttattaagaaatctaaaacacagtaatttgaggtatagtttttt 36189010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 268 - 319
Target Start/End: Complemental strand, 1335297 - 1335246
Alignment:
Q  268 tttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagt 319  Q
    |||||||| |||||||| |||||||||||||||||||||| ||| |||||||    
T  1335297 tttataagaaaaaaacattaattcacacttattaagaaaactaatacttagt 1335246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 8237811 - 8237740
Alignment:
Q  161 ttttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagtta 232  Q
    |||||| || ||||| ||||| ||||| ||||||||||||| |||||||| ||||| ||||||||| |||||    
T  8237811 ttttttggtcaaaaccaagtgagagtaagcttgctaacttattccttcatatttttaggtgggagtaagtta 8237740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 24516079 - 24516004
Alignment:
Q  158 tggttttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    ||||||||| |||||||  |||||| ||||||||||||||||  || |||||| |||||||||| |||| ||||||    
T  24516079 tggttttttggtaaaaaacaagtggtagtaggcttgctaactcgcttcttcatatttttgggtgtgagtaagttag 24516004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 339
Target Start/End: Complemental strand, 51309603 - 51309529
Alignment:
Q  266 aatttataagcaaaaaa-cagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||||||||| ||  |||||||| ||||||||||||| || || ||||| ||| ||||||||||||||    
T  51309603 aatttataagcaaaaaaacacaaattcacatttattaagaaaataaaaacatagtagtttgaggtataatttttt 51309529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 42486380 - 42486319
Alignment:
Q  161 ttttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgg 222  Q
    |||||| ||||||| ||||||||||||  |||||||||||||| |||||| ||||| |||||    
T  42486380 ttttttggtaaaaattaagtgggagtaaacttgctaacttacttcttcatatttttaggtgg 42486319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 255 - 340
Target Start/End: Complemental strand, 46303778 - 46303693
Alignment:
Q  255 tcctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttta 340  Q
    ||||| |||| |||||||||| |||||| |  |||||| | |||||||||||| ||| || |||||||||||  ||||||||||||    
T  46303778 tcctcggttccaatttataagaaaaaaatatcaattcatatttattaagaaaactaaaacatagtaatttaaaatataatttttta 46303693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 52252232 - 52252152
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| |||||||||||| |||||| | ||||||| |||||   |||||| ||||||||||| |||| | ||||||||||||    
T  52252232 cctccgtcctaatttataagtaaaaaatattaattcatactta---agaaaactaacacttagtgatttgaagtataatttttt 52252152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 8993719 - 8993667
Alignment:
Q  181 gggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    |||||||| |||||||||||||||||||||| |||||| || |||| ||||||    
T  8993719 gggagtagacttgctaacttactccttcatgattttggatgagagtaagttag 8993667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 36656886 - 36656938
Alignment:
Q  180 tgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagtta 232  Q
    ||||| |||||||||||||||||| |||||||||||| |||| |||| |||||    
T  36656886 tgggattaggcttgctaacttacttcttcatgtttttaggtgagagtaagtta 36656938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 45782369 - 45782321
Alignment:
Q  264 ctaatttataagcaaaaaacagtaattcacacttattaagaaaattaac 312  Q
    ||||||||||||||||||||| ||||| ||| ||||||| |||||||||    
T  45782369 ctaatttataagcaaaaaacactaatttacatttattaaaaaaattaac 45782321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 30612346 - 30612293
Alignment:
Q  287 aattcacacttattaagaaaattaacacttagtaatttaaggtataatttttta 340  Q
    |||||||||||||||||||||  || |  |||||||||||| ||||||||||||    
T  30612346 aattcacacttattaagaaaacaaaaatatagtaatttaagatataatttttta 30612293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 8993812 - 8993776
Alignment:
Q  190 cttgctaacttactccttcatgtttttgggtgggagt 226  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  8993812 cttgctaacttactccttcatgtttttgagtgtgagt 8993776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 45715326 - 45715370
Alignment:
Q  180 tgggagtaggcttgctaacttactccttcatgtttttgggtggga 224  Q
    ||||||||| |||||||||||||||||| || ||||||| |||||    
T  45715326 tgggagtagacttgctaacttactcctttatatttttggatggga 45715370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 11044258 - 11044175
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  11044258 cctccgttctaatttataagcaaaaaacactaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 11044175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 27621331 - 27621248
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| | ||||||||||||    
T  27621331 cctccgtcctaatttataagcaaaaaacactaattcacacttattaagaaaactaacacttagtgatttgaagtataatttttt 27621248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 27752787 - 27752704
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| || |||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  27752787 cctccgtcctgatttataagcaaaaaacactaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 27752704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 35260258 - 35260175
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| |||||| |||||||    
T  35260258 cctccgtcctaatttataagcaaaaaacactaattcacacttattaagaaaactaacacttagtgatttgaggtatcatttttt 35260175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 256 - 340
Target Start/End: Original strand, 24612437 - 24612524
Alignment:
Q  256 cctccgttctaatttataagcaaaaaa---cagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttta 340  Q
    ||||| |||||||||||||||||||||   || |||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  24612437 cctccattctaatttataagcaaaaaaaaacactaattcacacttattaagaaaattaacacttagtgatttgaggtataatttttta 24612524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 258 - 339
Target Start/End: Original strand, 44411171 - 44411252
Alignment:
Q  258 tccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| | ||||||||||||    
T  44411171 tccgtcctaatttataagcaaaaaacactaattcacacttattaagaaaactaacacttagtgatttgaagtataatttttt 44411252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 24409299 - 24409219
Alignment:
Q  158 tggttttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttagtagct 238  Q
    |||||||| ||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  24409299 tggtttttaagtcaaaagcaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtaagttagcagct 24409219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 31132991 - 31133072
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  31132991 cctccgtcctaatttataagcaaaaaac--taattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 31133072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 3100154 - 3100071
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||||  |||||||||||||||||||| |||||||||||||||||||||| ||||||||| | |||| ||||||||||||||    
T  3100154 cctccgtcttaatttataagcaaaaaacactaattcacacttattaagaaaactaacacttaatgatttgaggtataatttttt 3100071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 11992929 - 11992846
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| |||||||||||| |||||||| ||||||||||| |||||||||| ||||||||||| |||| ||||||||||||||    
T  11992929 cctccgtcctaatttataagtaaaaaacactaattcacactaattaagaaaactaacacttagtgatttgaggtataatttttt 11992846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 39187431 - 39187351
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataattt 336  Q
    |||||||  |||||||||||||||||||| |||||||| ||||||||||||| ||||||||||| |||| |||||||||||    
T  39187431 cctccgtcataatttataagcaaaaaacactaattcacgcttattaagaaaactaacacttagtgatttgaggtataattt 39187351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 37598270 - 37598187
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| ||||||||  |||||||||||| ||||||||| | |||| ||||||||||||||    
T  37598270 cctccgtcctaatttataagcaaaaaacactaattcacggttattaagaaaactaacacttactgatttgaggtataatttttt 37598187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 339
Target Start/End: Complemental strand, 44052814 - 44052739
Alignment:
Q  264 ctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||||||||||| | |||||||||||||||||||||| ||||||| ||| |||| ||||||||||||||    
T  44052814 ctaatttataagcaaaaaatactaattcacacttattaagaaaactaacactcagtgatttgaggtataatttttt 44052739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 25321546 - 25321627
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttt 337  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||| |||||| ||||| || || |||| ||||||||||||    
T  25321546 cctccgtcctaatttataagcaaaaaacactaattcacacttatttagaaaactaacatttggtgatttgaggtataatttt 25321627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 264 - 339
Target Start/End: Complemental strand, 35344561 - 35344485
Alignment:
Q  264 ctaatttataagcaaaaaa-cagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||||||||||| |  |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  35344561 ctaatttataagcaaaaaaactctaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 35344485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 38214690 - 38214637
Alignment:
Q  180 tgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  38214690 tgggagtaggcttgctaacttactccttcatgtttttgggtggaagtaagttag 38214637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 12108357 - 12108273
Alignment:
Q  256 cctccgttctaatttataagcaaaaaac-agtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||||||||||||||||| ||||||  | |||||| ||||||||||||||| ||||| |||||||||| | ||||||||||||    
T  12108357 cctccgttctaatttataagaaaaaaaatattaattctcacttattaagaaaactaacatttagtaatttgaagtataatttttt 12108273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 319
Target Start/End: Original strand, 32678477 - 32678541
Alignment:
Q  256 cctccgttctaatttataagcaaaaaa-cagtaattcacacttattaagaaaattaacacttagt 319  Q
    ||||||| ||||||||||||||||||| || |||||||||||||||||||||| |||||||||||    
T  32678477 cctccgtcctaatttataagcaaaaaaacattaattcacacttattaagaaaactaacacttagt 32678541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 34713729 - 34713646
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| |||| ||||||| |||||| | ||||||||| |||||||||||| ||| ||||||| |||| ||||||||||||||    
T  34713729 cctccgtcctaagttataagtaaaaaatactaattcacatttattaagaaaactaatacttagtgatttgaggtataatttttt 34713646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 256 - 318
Target Start/End: Original strand, 37566457 - 37566519
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttag 318  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||| |||| ||| ||||||    
T  37566457 cctccgtcctaatttataagcaaaaaacactaattcacacttattaaaaaaactaatacttag 37566519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 339
Target Start/End: Original strand, 35346267 - 35346347
Alignment:
Q  258 tccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||| |||||||||||| |||||||  ||||||||| |||||||||||||||| | ||||| |||| ||||||||||||||    
T  35346267 tccgtcctaatttataag-aaaaaactctaattcacatttattaagaaaattaatatttagtgatttgaggtataatttttt 35346347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 41829473 - 41829538
Alignment:
Q  177 aagtgggagtaggcttgctaacttactccttcatgttttt-gggtgggagtgagttagtagctccc 241  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||| |||| |||||| |||||||    
T  41829473 aagtgggagtagacttgctaacttactccttcatgtttttggggtgagagtaagttagcagctccc 41829538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 337
Target Start/End: Original strand, 2238565 - 2238636
Alignment:
Q  266 aatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttt 337  Q
    |||||||||||||||||||  |||||||||||||||||||||  || || ||||| ||| ||||||||||||    
T  2238565 aatttataagcaaaaaacacaaattcacacttattaagaaaacaaaaacatagtagtttgaggtataatttt 2238636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 5180978 - 5180932
Alignment:
Q  177 aagtgggagtaggcttgctaacttactccttcatgtttttgggtggg 223  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||    
T  5180978 aagtgggagtaggcttgctaacttactctttcatgtttttaggtggg 5180932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 266 - 337
Target Start/End: Original strand, 24510667 - 24510738
Alignment:
Q  266 aatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttt 337  Q
    |||||||||||||||||||  |||||||||||||||| ||||  || || ||||| ||| ||||||||||||    
T  24510667 aatttataagcaaaaaacataaattcacacttattaataaaacaaaaacatagtagtttgaggtataatttt 24510738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 277 - 340
Target Start/End: Complemental strand, 36538238 - 36538175
Alignment:
Q  277 aaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttta 340  Q
    |||||||| ||||||||| |||||||||||| ||||| ||||| |||| ||| |||||||||||    
T  36538238 aaaaaacactaattcacatttattaagaaaactaacatttagtgatttgaggaataatttttta 36538175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 29760932 - 29760894
Alignment:
Q  178 agtgggagtaggcttgctaacttactccttcatgttttt 216  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  29760932 agtgagagtaggcttgctaacttactccttcatgttttt 29760894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 339
Target Start/End: Complemental strand, 41426530 - 41426457
Alignment:
Q  266 aatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||||||||||||||||  |||||||| ||||| | ||||  || || ||||| ||||||||||||||||||    
T  41426530 aatttataagcaaaaaacaaaaattcacatttattgaaaaaacaaaaacatagtagtttaaggtataatttttt 41426457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 18030390 - 18030435
Alignment:
Q  177 aagtgggagtaggcttgctaacttactccttcatgtttttgggtgg 222  Q
    |||||||||||| |||| |||||||||| ||||| |||||||||||    
T  18030390 aagtgggagtagacttgttaacttactctttcatatttttgggtgg 18030435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 5182235 - 5182287
Alignment:
Q  182 ggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttagt 234  Q
    |||||||| ||||||||||| ||||||| |||||| ||||||| | |||||||    
T  5182235 ggagtagggttgctaacttaatccttcacgtttttaggtgggaataagttagt 5182287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 27740772 - 27740720
Alignment:
Q  287 aattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||| ||||||||| |||||||| || ||||||||| || |||||||||||    
T  27740772 aattcatacttattaaaaaaattaaaacatagtaatttgagatataatttttt 27740720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 18206236 - 18206319
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  18206236 cctccgtcctaatttataagcaaaaaacactaattcacacttattaagaaaattaacacttagtgatttgaggtataatttttt 18206319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 41889368 - 41889285
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| | ||||||||||||    
T  41889368 cctccgttctaatttataagcaaaaaacattaattcacacttattaagaaaactaacacttagtgatttgatgtataatttttt 41889285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 3157633 - 3157550
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| |||| ||||||||||||||    
T  3157633 cctccgtcctaatttataagcaaaaaacactaattcatacttattaagaaaactaacacttagtgatttgaggtataatttttt 3157550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 35181389 - 35181306
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||| | |||| ||||||||||||||    
T  35181389 cctccgtcctaatttataagcaaaaaacactaattcacacttattaagaaaactaacacttactgatttgaggtataatttttt 35181306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 43107822 - 43107905
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| |||| ||||||||||||||    
T  43107822 cctccgtcctaatttataagcaaaaaacactaattcacatttattaagaaaactaacacttagtgatttgaggtataatttttt 43107905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 19932973 - 19933055
Alignment:
Q  257 ctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| |||||| |||||||    
T  19932973 ctccgtcctaatttataagcaaaaaacactaattcacacttattaagaaaactaacacttagtgatttgaggtatgatttttt 19933055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 258 - 339
Target Start/End: Complemental strand, 48879583 - 48879502
Alignment:
Q  258 tccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| | |||| ||||||||||||||    
T  48879583 tccgttctaatttataagcaaaaaacactaatttacacttattaagaaaactaacacttaatgatttgaggtataatttttt 48879502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 255 - 339
Target Start/End: Complemental strand, 44600644 - 44600560
Alignment:
Q  255 tcctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||||||||||||||||||||||||| | ||||||||| |||||||||||| ||||||||||  |||| ||||||||||||||    
T  44600644 tcctccgttctaatttataagcaaaaaatactaattcacatttattaagaaaactaacacttagcgatttgaggtataatttttt 44600560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 23106650 - 23106567
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||||  |||||||||||||||||| | |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  23106650 cctccgtcttaatttataagcaaaaaatactaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 23106567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 40560579 - 40560496
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||||||| |||| ||||||||| |||||| ||||||||||||||    
T  40560579 cctccgtcctaatttataagcaaaaaacattaatttacacttattaaaaaaactaacacttaataatttgaggtataatttttt 40560496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 258 - 339
Target Start/End: Original strand, 22111248 - 22111330
Alignment:
Q  258 tccgttctaatttataagcaaaa-aacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||| ||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  22111248 tccgtcctaatttataagcaaaataacactaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 22111330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 258 - 339
Target Start/End: Complemental strand, 40583341 - 40583259
Alignment:
Q  258 tccgttctaatttataagcaaaa-aacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||| ||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  40583341 tccgtcctaatttataagcaaaataacactaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 40583259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 261 - 339
Target Start/End: Original strand, 41815615 - 41815693
Alignment:
Q  261 gttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||||||||||||||||||| | ||||| |||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  41815615 gttctaatttataagcaaaaaataataattgacacttattaagaaaactaacacttagtgatttgaggtataatttttt 41815693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 7989224 - 7989308
Alignment:
Q  256 cctccgttctaatttataagcaaaaaa-cagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||| |||||||| |||||| || |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  7989224 cctccgttctattttataagtaaaaaaacattaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 7989308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 319
Target Start/End: Original strand, 21654038 - 21654101
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagt 319  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||    
T  21654038 cctccgttctaatttataagcaaaaaacactaattcacacttattaagaaaactaatacttagt 21654101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 9818665 - 9818581
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttta 340  Q
    |||||||  |||||||||||  ||||||| |||||||||||||||||||||| ||||| ||||| |||| |||||||||||||||    
T  9818665 cctccgtcgtaatttataagtcaaaaacactaattcacacttattaagaaaactaacatttagtgatttgaggtataatttttta 9818581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 10720590 - 10720506
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttta 340  Q
    |||||||  |||||||||||  ||||||| |||||||||||||||||||||| ||||| ||||| |||| |||||||||||||||    
T  10720590 cctccgtcgtaatttataagtcaaaaacactaattcacacttattaagaaaactaacatttagtgatttgaggtataatttttta 10720506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 42617869 - 42617785
Alignment:
Q  256 cctccgttctaatttataagcaaaaaa-cagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||| || ||||||||||||||||| |||| ||||||||| | |||| ||||||||||||||    
T  42617869 cctccgtcctaatttataagcaaaaaaacactaattcacacttattaaaaaaactaacacttaatgatttgaggtataatttttt 42617785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 258 - 339
Target Start/End: Complemental strand, 45599102 - 45599019
Alignment:
Q  258 tccgttctaatttataagcaaaaaa--cagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||| ||||||||||| |||||||  ||||||||| ||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  45599102 tccgtcctaatttataaacaaaaaaaacagtaattcgcacttattaagaaaactaacacttagtgatttgaggtataatttttt 45599019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 264 - 339
Target Start/End: Original strand, 32491032 - 32491107
Alignment:
Q  264 ctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||||||||||||| ||||||||| |||||||||||| |||||||| || |||| | ||||||||||||    
T  32491032 ctaatttataagcaaaaaacactaattcacatttattaagaaaactaacacttggtgatttgatgtataatttttt 32491107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 47383603 - 47383520
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| |||||||||||||||||||||  ||||||||| ||||||||||| ||||||||| | |||| || |||||||||||    
T  47383603 cctccgtcctaatttataagcaaaaaacacaaattcacacatattaagaaaactaacacttaatgatttgagatataatttttt 47383520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 43071712 - 43071768
Alignment:
Q  177 aagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||    
T  43071712 aagtgggagtagggttgctaacttactccttcatgtttttgggtgagagtaagttag 43071768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 29235986 - 29236068
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| |||||||||||||||||||||  |||||||||| ||||||||||| || || ||||| ||| ||||||||||||||    
T  29235986 cctccgtcctaatttataagcaaaaaacacaaattcacactcattaagaaaatgaa-acatagtagtttgaggtataatttttt 29236068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 41890162 - 41890243
Alignment:
Q  257 ctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||| |||||||||||| |||||||| ||||||| |||||||||||||| ||||| ||| | ||||  |||||||||||||    
T  41890162 ctccgtcctaatttataag-aaaaaacactaattcaaacttattaagaaaactaacatttaatgatttggggtataatttttt 41890243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 24252389 - 24252326
Alignment:
Q  169 taaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagtta 232  Q
    |||||| ||||| | |||||||||| ||| |||||||||||||||||||||| ||||| |||||    
T  24252389 taaaaagtaagtcgaagtaggcttgttaatttactccttcatgtttttgggtcggagtaagtta 24252326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 266 - 337
Target Start/End: Complemental strand, 30082538 - 30082467
Alignment:
Q  266 aatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttt 337  Q
    |||||||| ||||||||||  |||||||||||||||||||||  || || ||||| ||| ||||||||||||    
T  30082538 aatttataggcaaaaaacacaaattcacacttattaagaaaacaaaaacatagtagtttgaggtataatttt 30082467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 7579328 - 7579398
Alignment:
Q  162 tttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagtta 232  Q
    |||||||| |||| |||||| |||| || |||||||||||||||||||||| ||| ||||| ||| |||||    
T  7579328 tttttagttaaaagtaagtgagagtgggtttgctaacttactccttcatgtgtttaggtggtagtaagtta 7579398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 339
Target Start/End: Complemental strand, 36576583 - 36576531
Alignment:
Q  286 taattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||||||||||| ||||||| ||||||||||| |||| ||||||||||||||    
T  36576583 taattcacacttat-aagaaaactaacacttagtgatttgaggtataatttttt 36576531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 9136804 - 9136749
Alignment:
Q  177 aagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagtta 232  Q
    |||||||||||| ||||||||| ||||| ||||| |||||| |||||||| |||||    
T  9136804 aagtgggagtagacttgctaacgtactcattcatttttttgtgtgggagtaagtta 9136749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 339
Target Start/End: Complemental strand, 34808384 - 34808333
Alignment:
Q  288 attcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||| |||||||| ||| ||||||| |||| ||||||||||||||    
T  34808384 attcacacttagtaagaaaactaatacttagtgatttgaggtataatttttt 34808333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 307
Target Start/End: Complemental strand, 40594015 - 40593964
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaa 307  Q
    ||||||| ||||||||||||||||||| |  |||||||| ||||||||||||    
T  40594015 cctccgtcctaatttataagcaaaaaatacaaattcacatttattaagaaaa 40593964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 308
Target Start/End: Original strand, 18800694 - 18800736
Alignment:
Q  266 aatttataagcaaaaaacagtaattcacacttattaagaaaat 308  Q
    ||||||||||||||||| |  ||||||||||||||||||||||    
T  18800694 aatttataagcaaaaaatacaaattcacacttattaagaaaat 18800736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 23731759 - 23731674
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaa--ttaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| |||||||||||  |||||||  ||||||||| ||||||||||||   ||||||||||| |||| | |||| |||||||    
T  23731759 cctccgtcctaatttataaaaaaaaaacgctaattcacatttattaagaaaactataacacttagtgatttgatgtatgatttttt 23731674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 41554631 - 41554589
Alignment:
Q  162 tttttagtaaaaactaagtgggagtaggcttgctaacttactc 204  Q
    ||||||||||||   ||||||||||||||||||||||||||||    
T  41554631 tttttagtaaaatgcaagtgggagtaggcttgctaacttactc 41554589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 7567778 - 7567823
Alignment:
Q  162 tttttagtaaaaactaagtgggagtaggcttgctaacttactcctt 207  Q
    ||||||||||||| |||||||| ||||  |||||||||||||||||    
T  7567778 tttttagtaaaaagtaagtgggtgtagatttgctaacttactcctt 7567823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 35084017 - 35084101
Alignment:
Q  256 cctccgttctaatttataagcaaaaaa-cagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| | ||||||||||||||||| ||  |||||||||||| |||||||| ||| ||  |||||||| || |||| ||||||    
T  35084017 cctccgtcccaatttataagcaaaaaaacacaaattcacacttaataagaaaactaaaacacagtaatttgagttatagtttttt 35084101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 39969914 - 39969997
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  39969914 cctccgtcctaatttataagcaaaaaacagtaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 39969997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 10591428 - 10591511
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| ||||||||||||||    
T  10591428 cctccgtcctaatttataagcaaaaaacagtaattcacacttattaagaaaactaacatttagtgatttgaggtataatttttt 10591511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 29180337 - 29180420
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  29180337 cctccgtcctaatttataagcaaaaaacactaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 29180420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 260 - 340
Target Start/End: Complemental strand, 49902218 - 49902138
Alignment:
Q  260 cgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttta 340  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| | |||||||||||||    
T  49902218 cgttctaatttataagcaaaaaacactaattcacacttattaagaaaactaacacttagtgatttgaagtataatttttta 49902138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 30776409 - 30776492
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  30776409 cctccgtcctaatttataagcaaaaaaaactaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 30776492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 38187653 - 38187736
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  38187653 cctccgtcctaatttataagctaaaaacactaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 38187736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 53677404 - 53677487
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| |||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  53677404 cctccgtcctaatttataagtaaaaaacattaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 53677487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 264 - 339
Target Start/End: Complemental strand, 37788638 - 37788563
Alignment:
Q  264 ctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  37788638 ctaatttataagcaaaaaatattaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 37788563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 43980693 - 43980610
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||| |||| |||||||| |||||    
T  43980693 cctccgtcctaatttataagcaaaaaacactaattcacacttattaagaaaactaacatttagtgatttgaggtataaattttt 43980610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 3043093 - 3043175
Alignment:
Q  257 ctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||| |||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| | || ||||||||||||||    
T  3043093 ctccgtcctaatttataagtaaaaaacactaattcacacttattaagaaaactaacacttagtgagttgaggtataatttttt 3043175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 257 - 339
Target Start/End: Complemental strand, 28681853 - 28681771
Alignment:
Q  257 ctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||| ||||||||||||||||||| | |||||||||||||||||||||| ||||| ||||| |||| ||||||||||||||    
T  28681853 ctccgtcctaatttataagcaaaaaatactaattcacacttattaagaaaactaacatttagtgatttgaggtataatttttt 28681771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 30777683 - 30777599
Alignment:
Q  256 cctccgttctaatttataagcaaaaaa-cagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||| || |||||||||||||||||||||| ||||| ||||| |||| ||||||||||||||    
T  30777683 cctccgtcctaatttataagcaaaaaaacactaattcacacttattaagaaaactaacaattagtgatttgaggtataatttttt 30777599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 339
Target Start/End: Original strand, 9798008 - 9798083
Alignment:
Q  264 ctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||||||||||||| ||||||||| |||||||||||| ||||| ||||| |||| ||||||||||||||    
T  9798008 ctaatttataagcaaaaaacactaattcacatttattaagaaaactaacatttagtgatttgaggtataatttttt 9798083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 29899910 - 29899827
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| |||||||||||| |||||||| ||||||||| |||||||||||| |||||| |||| |||| ||||||||||||||    
T  29899910 cctccgtcctaatttataagtaaaaaacactaattcacatttattaagaaaactaacacgtagtgatttgaggtataatttttt 29899827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 50768640 - 50768557
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| |||  || |||||||||||    
T  50768640 cctccgtcctaatttataagcaaaaaacactaattcacacttattaagaaaactaatacttagtgattcgagatataatttttt 50768557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 51495343 - 51495261
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| |||||||||||| |||||||| ||||||||| |||||||||||||||||||||| | |||| ||||||||||||||    
T  51495343 cctccgtcctaatttataag-aaaaaacactaattcacagttattaagaaaattaacacttaatgatttgaggtataatttttt 51495261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 55937628 - 55937711
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| |||||||||||| |||||||| ||||||| |||||||||||||| ||||||||||| |||| |||||||| |||||    
T  55937628 cctccgtcctaatttataagtaaaaaacactaattcatacttattaagaaaactaacacttagtgatttgaggtataagttttt 55937711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 257 - 339
Target Start/End: Complemental strand, 47807388 - 47807307
Alignment:
Q  257 ctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||| |||||||||||||||||| || ||||||||||||||||||||||||||  |||||| |||| ||||||||||||||    
T  47807388 ctccgtcctaatttataagcaaaaa-cactaattcacacttattaagaaaattaatccttagtgatttgaggtataatttttt 47807307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 339
Target Start/End: Original strand, 32012250 - 32012335
Alignment:
Q  255 tcctccgttctaatttataagcaaaaaa-cagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||| |||| ||||||||||||||||| || |||||||||||||||||||||| ||||||||| | |||| ||||||||||||||    
T  32012250 tcctctgttcaaatttataagcaaaaaaacattaattcacacttattaagaaaactaacacttaatgatttgaggtataatttttt 32012335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 35603173 - 35603244
Alignment:
Q  162 tttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    ||||| |||||||  |||||||| || |||||||||||||||||||||||||||||||||||||| ||||||    
T  35603173 tttttggtaaaaagcaagtgggaataagcttgctaacttactccttcatgtttttgggtgggagtaagttag 35603244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 49605908 - 49605965
Alignment:
Q  176 taagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    ||||||||||||| ||| ||||||||||||| ||||||||||||||||||| ||||||    
T  49605908 taagtgggagtagactttctaacttactcctccatgtttttgggtgggagtaagttag 49605965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 30925438 - 30925382
Alignment:
Q  177 aagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    ||||||||||||||||||||||||||||||| || ||||| ||||||||| ||||||    
T  30925438 aagtgggagtaggcttgctaacttactccttaatatttttaggtgggagtaagttag 30925382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 30926000 - 30926056
Alignment:
Q  177 aagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    |||||||||||| ||||||||||||||||||||||||||| | ||||||| ||||||    
T  30926000 aagtgggagtagacttgctaacttactccttcatgtttttagatgggagtaagttag 30926056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 5371034 - 5371084
Alignment:
Q  162 tttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgt 212  Q
    |||||||||||||  |||||||||||||||||||||||| |||||||||||    
T  5371034 tttttagtaaaaagcaagtgggagtaggcttgctaactttctccttcatgt 5371084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 339
Target Start/End: Complemental strand, 38941034 - 38940981
Alignment:
Q  286 taattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||||||||||||||||||| ||||||||| | |||| ||||||||||||||    
T  38941034 taattcacacttattaagaaaactaacacttaatgatttgaggtataatttttt 38940981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 1620225 - 1620141
Alignment:
Q  256 cctccgttctaatttataagcaaaaaa-cagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||| |||||||||||||| ||||||| || |||||||||||||||||| || |||| ||||||| |||| || ||| |||||||    
T  1620225 cctcggttctaatttataaacaaaaaaacactaattcacacttattaaggaagttaatacttagtgatttgagatatcatttttt 1620141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 24549936 - 24550007
Alignment:
Q  162 tttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    |||||||||||||  ||| ||||||| | |||||||||||||| |||||||||||| |||||| | ||||||    
T  24549936 tttttagtaaaaatcaagcgggagtaaggttgctaacttactcattcatgtttttgagtgggactaagttag 24550007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 46333843 - 46333897
Alignment:
Q  153 aaagatggttttttagtaaaaactaagtgggagtaggcttgctaacttactccttc 208  Q
    |||| |||||||||||||||||| ||||||| ||||| ||||||||||||||||||    
T  46333843 aaagttggttttttagtaaaaaccaagtgggtgtagg-ttgctaacttactccttc 46333897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 339
Target Start/End: Original strand, 5222227 - 5222301
Alignment:
Q  266 aatttataagcaaaaaacagtaa-ttcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||||||||||||||   ||| ||||||||||||||||||| ||| || ||||||||| || |||||||||||    
T  5222227 aatttataagcaaaaaaatataaattcacacttattaagaaaactaatacatagtaatttgagttataatttttt 5222301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 19655641 - 19655715
Alignment:
Q  159 ggttttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    |||||||| ||||| | ||||| ||||||| |||||||||||||| ||||||  |||| ||||||||| ||||||    
T  19655641 ggttttttggtaaagaataagttggagtagacttgctaacttactacttcatccttttaggtgggagtaagttag 19655715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 310
Target Start/End: Complemental strand, 51495422 - 51495369
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaatta 310  Q
    ||||||| |||||||||||| |||||| | |||||||||||||||||||||||||    
T  51495422 cctccgtcctaatttataag-aaaaaatattaattcacacttattaagaaaatta 51495369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 339
Target Start/End: Original strand, 27750275 - 27750356
Alignment:
Q  261 gttctaatttataagcaaaaaacagtaattcacac---ttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||||| |||||||| | ||||| ||||   |||||||||||||||||| ||||| |||| || ||| |||||||    
T  27750275 gttctaatttataggcaaaaaatattaatttacacttattattaagaaaattaacatttagtgatttgagatatgatttttt 27750356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 49605381 - 49605317
Alignment:
Q  158 tggttttttagtaaaa-actaagtgggagtaggcttgctaacttactccttcatgtttttgggtgg 222  Q
    ||||||||| |||||| |||| ||||||||||| |||||||||||||| | |||||||||| ||||    
T  49605381 tggttttttggtaaaatacta-gtgggagtagggttgctaacttactcttacatgtttttgagtgg 49605317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 255 - 339
Target Start/End: Original strand, 16286041 - 16286125
Alignment:
Q  255 tcctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  16286041 tcctccgtcctaatttataagtaaaaaacattaattcacacttattaagaaaattaacacttagtgatttgaggtataatttttt 16286125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 8541523 - 8541606
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  8541523 cctccgtcctaatttataagcaaaaaacattaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 8541606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 30086505 - 30086589
Alignment:
Q  256 cctccgttctaatttataagcaaaaaa-cagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||| |||||||||| ||||||||||||||    
T  30086505 cctccgttctaatttataagcaaaaaaacattaattcacacttattaagaaaactaacatttagtaatttgaggtataatttttt 30086589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 8145972 - 8146055
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||| |||| ||||||||||||||    
T  8145972 cctccgtcctaatttataagcaaaaaacattaattcacacttattaagaaaactaacactcagtgatttgaggtataatttttt 8146055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 19516606 - 19516677
Alignment:
Q  161 ttttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagtta 232  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||    
T  19516606 ttttttagtaaaaactaagtgggagtagacttgctaacttactccttcatgtttttgtgtgggagtaagtta 19516677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 25962407 - 25962490
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  25962407 cctccgtcctaatttataagcaaaaaagaataattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 25962490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 31316760 - 31316843
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| |||| ||||||||||||||    
T  31316760 cctccgtcctaatttataagcaaaaaacactaattcacagttattaagaaaactaacacttagtgatttgaggtataatttttt 31316843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 35462678 - 35462761
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||| | |||| ||||||||||||||    
T  35462678 cctccgtcctaatttataagcaaaaaacactaattcacacttattaagaaaactaacacttaatgatttgaggtataatttttt 35462761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 264 - 339
Target Start/End: Complemental strand, 20915051 - 20914976
Alignment:
Q  264 ctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| ||||||| |||||||||||    
T  20915051 ctaatttataagcaaaaaatactaattcacacttattaagaaaactaacacttagtgatttaagatataatttttt 20914976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 265 - 339
Target Start/End: Original strand, 31690588 - 31690662
Alignment:
Q  265 taatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||||||||||||||| | |||||||||||||||||||||||||| ||||||| |||| ||||||||||||||    
T  31690588 taatttataagcaaaaaatactaattcacacttattaagaaaattaatacttagtgatttgaggtataatttttt 31690662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 258 - 339
Target Start/End: Complemental strand, 13146927 - 13146846
Alignment:
Q  258 tccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||||||||||||||||| | ||||||| |||||||| ||||| ||||||||||| |||| ||||||||||||||    
T  13146927 tccgttctaatttataagcaaaaaatactaattcatacttattatgaaaactaacacttagtgatttgaggtataatttttt 13146846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 255 - 339
Target Start/End: Complemental strand, 12639089 - 12639006
Alignment:
Q  255 tcctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||||| |||||||||||| |||||||| |||||||||||||||||||||| ||||| ||||| |||| ||||||||||||||    
T  12639089 tcctccgtcctaatttataag-aaaaaacactaattcacacttattaagaaaactaacatttagttatttgaggtataatttttt 12639006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 255 - 339
Target Start/End: Original strand, 24432358 - 24432442
Alignment:
Q  255 tcctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||  ||||||||||  |||||| | |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  24432358 tcctccgtcttaatttataataaaaaaagattaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 24432442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 34800048 - 34799977
Alignment:
Q  162 tttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    |||||||||||||  ||||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||||    
T  34800048 tttttagtaaaaagcaagtgggagtaggcttggtaacttactccttcatgattttaggtgggagtaagttag 34799977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 42365235 - 42365152
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||||||||||||||||| |||||||| ||||||| | |||||||||||| ||| ||||||| |||| ||||| ||||||||    
T  42365235 cctccgttctaatttataagtaaaaaacactaattcatatttattaagaaaactaatacttagtgatttgaggtacaatttttt 42365152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 157 - 233
Target Start/End: Complemental strand, 2808068 - 2807992
Alignment:
Q  157 atggttttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    |||||||||||||||||   |||||| ||||||||||||||||||||||||| ||||||| |||| |||| ||||||    
T  2808068 atggttttttagtaaaatgcaagtggaagtaggcttgctaacttactccttcgtgtttttaggtgagagtaagttag 2807992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 280 - 339
Target Start/End: Original strand, 37066206 - 37066265
Alignment:
Q  280 aaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||||||||||||||||||||||||| ||||||||| | |||| ||||||||||||||    
T  37066206 aaacagtaattcacacttattaagaaaactaacacttaatgatttgaggtataatttttt 37066265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 19986845 - 19986920
Alignment:
Q  158 tggttttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    |||| |||| || ||||| ||||||||| | | |||||||||||||||||||||||||| ||||||||| ||||||    
T  19986845 tggtattttggtcaaaaccaagtgggaggaagattgctaacttactccttcatgtttttaggtgggagtaagttag 19986920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 36413895 - 36413978
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||| |||||||||  |||||||||||||||||||||  || || ||||| ||| || |||||||||||    
T  36413895 cctccgtcctaatttataaacaaaaaacacaaattcacacttattaagaaaacaaaaacatagtagtttgagatataatttttt 36413978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 20454505 - 20454555
Alignment:
Q  162 tttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgt 212  Q
    |||||||||||||  |||||||||||||||||||||||| |||||||||||    
T  20454505 tttttagtaaaaagcaagtgggagtaggcttgctaactttctccttcatgt 20454555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 19516208 - 19516171
Alignment:
Q  162 tttttagtaaaaactaagtgggagtaggcttgctaact 199  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19516208 tttttagtaaaaactaagtgggagtaggcttgctaact 19516171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 3957378 - 3957304
Alignment:
Q  158 tggttttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    |||| |||| ||||||  |||||||||||| ||||||||||||||  |||||| ||||||||||||||| ||||||    
T  3957378 tggtattttggtaaaacataagtgggagtaagcttgctaacttac-acttcatatttttgggtgggagttagttag 3957304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 339
Target Start/End: Complemental strand, 24439771 - 24439689
Alignment:
Q  257 ctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||| |||||||||||||||||||||  | |||||||||||||| ||| |||| || |  |||||| || |||||||||||    
T  24439771 ctccgtcctaatttataagcaaaaaacacaatttcacacttattaaaaaagttaaaacattataatttgagatataatttttt 24439689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 3959690 - 3959730
Alignment:
Q  193 gctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  3959690 gctaacttactccttcatgttttttggtgggagtaagttag 3959730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 2002104 - 2002145
Alignment:
Q  266 aatttataagcaaaaaacagtaattcacacttattaagaaaa 307  Q
    |||||||||| ||||||||  |||||||||||||||||||||    
T  2002104 aatttataagaaaaaaacacaaattcacacttattaagaaaa 2002145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 339
Target Start/End: Complemental strand, 8144132 - 8144051
Alignment:
Q  258 tccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||| |||||||||||| ||||| ||  |||  |||||||||||||||| ||| || || |||||| |||||||| |||||    
T  8144132 tccgtcctaatttataagaaaaaaccatcaatgtacacttattaagaaaaataaaacatattaatttgaggtataaattttt 8144051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 20452416 - 20452448
Alignment:
Q  279 aaaacagtaattcacacttattaagaaaattaa 311  Q
    |||||| ||||||||||||||||||||||||||    
T  20452416 aaaacattaattcacacttattaagaaaattaa 20452448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 30772764 - 30772824
Alignment:
Q  162 tttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgg 222  Q
    ||||||||||||| |||||| ||||| ||||  ||| ||||| |||||||||||| |||||    
T  30772764 tttttagtaaaaagtaagtgagagtatgcttattaatttacttcttcatgtttttaggtgg 30772824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 9e-28; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 23873789 - 23873872
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  23873789 cctccgtcctaatttataagcaaaaaacactaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 23873872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 157 - 233
Target Start/End: Complemental strand, 10765841 - 10765765
Alignment:
Q  157 atggttttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  10765841 atggttttttagtaaaaatcaagtgggagtaggcttgctaacttactccttcatgtttttaggtgggagtaagttag 10765765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 18852421 - 18852338
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||| ||||| |||| ||||||||||||||    
T  18852421 cctccgttctaatttataagcaaaaaacactaattcacacttattaagaaagctaacagttagtgatttgaggtataatttttt 18852338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 339
Target Start/End: Complemental strand, 28017846 - 28017771
Alignment:
Q  264 ctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  28017846 ctaatttataagcaaaaaacattaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 28017771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 35942039 - 35941956
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||| | |||| ||||||||||||||    
T  35942039 cctccgtcctaatttataagcaaaaaacactaattcacacttattaagaaaactaacacttaattatttgaggtataatttttt 35941956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 49924617 - 49924534
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| |||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  49924617 cctccgtcctaatttataagtaaaaaacattaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 49924534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 255 - 340
Target Start/End: Complemental strand, 35189401 - 35189315
Alignment:
Q  255 tcctccgttctaatttataagcaaaaaacagtaattcacacttattaag-aaaattaacacttagtaatttaaggtataatttttta 340  Q
    |||||||| ||||||||||||||||||||| ||||||||| |||||||| |||| |||||||||||||||| |||||||||||||||    
T  35189401 tcctccgtcctaatttataagcaaaaaacactaattcacatttattaagaaaaactaacacttagtaatttgaggtataatttttta 35189315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 255 - 339
Target Start/End: Original strand, 38942401 - 38942486
Alignment:
Q  255 tcctccgttctaatttataagcaaaaaa-cagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||||||||| ||||||||||||||| || |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  38942401 tcctccgttctattttataagcaaaaaaacattaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 38942486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 258 - 339
Target Start/End: Original strand, 43656001 - 43656082
Alignment:
Q  258 tccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||| |||||||| |||||||||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  43656001 tccgtcctaatttaaaagcaaaaaacattaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 43656082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 40220257 - 40220171
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagta---atttaaggtataatttttt 339  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||   |||| ||||||||||||||    
T  40220257 cctccgtcctaatttacaagcaaaaaacagtaattcacacttattaagaaaactaacacttagtagtgatttgaggtataatttttt 40220171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 25990946 - 25990863
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| ||| ||||| |||||||||||| ||||||||||| |||| ||||||||||||||    
T  25990946 cctccgtcctaatttataagcaaaaaacattaaatcacatttattaagaaaactaacacttagtgatttgaggtataatttttt 25990863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 26907053 - 26907136
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| | |||| ||||||||||||||    
T  26907053 cctccgtcctaatttataagcaaaaaacactaattcacacttattaagaaaactaatacttaatgatttgaggtataatttttt 26907136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 46949519 - 46949436
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| |||| || |||||||||||    
T  46949519 cctccgtcctaatttataagcaaaaaacactaattcacatttattaagaaaactaacacttagtgatttgagatataatttttt 46949436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 257 - 339
Target Start/End: Complemental strand, 44875376 - 44875294
Alignment:
Q  257 ctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||| ||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||| |||| |||||||| |||||    
T  44875376 ctccgtcctaatttataagcaaaaaacactaattcacacttactaagaaaactaacacttagtgatttgaggtataaattttt 44875294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 258 - 339
Target Start/End: Complemental strand, 9128239 - 9128158
Alignment:
Q  258 tccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||| |||||||||||| |||||| | |||||||||||||||||||||||||||||||||| |||| ||||||| ||||||    
T  9128239 tccgtcctaatttataagtaaaaaatattaattcacacttattaagaaaattaacacttagtgatttgaggtatactttttt 9128158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 258 - 339
Target Start/End: Complemental strand, 15285998 - 15285918
Alignment:
Q  258 tccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| |||| | ||||||||||||    
T  15285998 tccgttctaatttataag-aaaaaacattaattcacacttattaagaaaactaacacttagtgatttgaagtataatttttt 15285918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 255 - 339
Target Start/End: Complemental strand, 26479939 - 26479854
Alignment:
Q  255 tcctccgttctaatttataagcaaaaaa-cagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||| |||| ||||| ||||| |||| ||||||||||||||    
T  26479939 tcctccgttctaatttataagcaaaaaaacaataattcacacttattaaaaaaactaacatttagtgatttgaggtataatttttt 26479854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 258 - 339
Target Start/End: Original strand, 31970273 - 31970354
Alignment:
Q  258 tccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||| |||| |||||| |||||||    
T  31970273 tccgtcctaatttataagcaaaaaatactaattcacacttattaagaagattaacacttagtgatttgaggtatgatttttt 31970354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 18913306 - 18913390
Alignment:
Q  256 cctccgttctaatttataagcaaaaaa-cagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||| || |||||||||||||||||||||| ||||| ||||| |||| ||||||||||||||    
T  18913306 cctccgtcctaatttataagcaaaaaaacactaattcacacttattaagaaaactaacatttagtgatttgaggtataatttttt 18913390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 38832911 - 38832847
Alignment:
Q  169 taaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  38832911 taaaaagtaagtgggagtaggcttgctaacttactccttcatgtttttaggtgggagtaagttag 38832847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 18036742 - 18036659
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| |||||||||||| |||||||| ||||||| |||||||||||||| ||||||||| | |||| ||||||||||||||    
T  18036742 cctccgtcctaatttataagtaaaaaacattaattcatacttattaagaaaactaacacttaatgatttgaggtataatttttt 18036659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 339
Target Start/End: Original strand, 28916486 - 28916560
Alignment:
Q  264 ctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  28916486 ctaatttataag-aaaaaacactaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 28916560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 339
Target Start/End: Original strand, 40935583 - 40935658
Alignment:
Q  264 ctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| |||| |||||| |||||||    
T  40935583 ctaatttataagcaaaaaacactaattcacatttattaagaaaactaacacttagtgatttgaggtatgatttttt 40935658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 339
Target Start/End: Complemental strand, 47997140 - 47997069
Alignment:
Q  268 tttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| |||||| |||||||    
T  47997140 tttataagcaaaaaacagtaattcacacttattaagaaaactaacatttagtgatttgaggtattatttttt 47997069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 45357837 - 45357922
Alignment:
Q  256 cctccgttctaatttataagcaaaaaa--cagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| |||||||||||||||||||  || ||||||||||||||||||| || ||||||||||| |||| ||||||||||||||    
T  45357837 cctccgtcctaatttataagcaaaaaaaacattaattcacacttattaagacaactaacacttagtgatttgaggtataatttttt 45357922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 339
Target Start/End: Original strand, 40960438 - 40960519
Alignment:
Q  258 tccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||| ||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| |||| ||| || |||||||    
T  40960438 tccgtcctaatttataagcaaaaaacactaattcacatttattaagaaaactaacacttagtgatttgaggcatgatttttt 40960519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 5494117 - 5494173
Alignment:
Q  177 aagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  5494117 aagtgggagtaggcttgctaacttactccttcatgtttttgggtgggaataagttag 5494173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 255 - 339
Target Start/End: Complemental strand, 15311376 - 15311292
Alignment:
Q  255 tcctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||  ||||||||||||| |||||| |||||||||||||||||||||| ||| ||||| | |||| ||||||||||||||    
T  15311376 tcctccgtcataatttataagcataaaacactaattcacacttattaagaaaactaatacttaatgatttgaggtataatttttt 15311292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 29488946 - 29488866
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataattt 336  Q
    ||||||| ||||||||||||  ||||||| ||||||||||||||||||||||  |||||||||| |||| |||||||||||    
T  29488946 cctccgtcctaatttataagtcaaaaacactaattcacacttattaagaaaacgaacacttagtgatttgaggtataattt 29488866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 3346665 - 3346734
Alignment:
Q  157 atggttttttagtaaaa-actaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagt 226  Q
    ||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| |||||||||    
T  3346665 atggttttttagtaaaatacta-gtgggagtagggttgctaacttactccttcatgtttttaggtgggagt 3346734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 330
Target Start/End: Complemental strand, 4529371 - 4529300
Alignment:
Q  258 tccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggta 330  Q
    |||||||||||||||||| |||||||| ||||||| |||||||||||||| ||||||||||| |||| |||||    
T  4529371 tccgttctaatttataag-aaaaaacactaattcatacttattaagaaaactaacacttagtgatttgaggta 4529300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 39026207 - 39026291
Alignment:
Q  256 cctccgttctaatttataagcaaaaaa-cagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||| || ||||||||| |||||||||||| |||||||| || |||| | ||||||||||||    
T  39026207 cctccgtcctaatttataagcaaaaaaacactaattcacatttattaagaaaactaacacttggtgatttgatgtataatttttt 39026291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 39015485 - 39015534
Alignment:
Q  177 aagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagt 226  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  39015485 aagtgggagtagacttgctaacttactccttcatgattttgggtgggagt 39015534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 3346101 - 3346046
Alignment:
Q  178 agtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||| | ||||||    
T  3346101 agtgggagtagggttgctaacttactccttcatgtttttaggtgggactaagttag 3346046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 5493336 - 5493280
Alignment:
Q  177 aagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    |||||||||||| |||||||||||||| |||||| ||||||||| ||||| ||||||    
T  5493336 aagtgggagtagacttgctaacttactgcttcatatttttgggttggagtaagttag 5493280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 12215062 - 12214991
Alignment:
Q  162 tttttagtaaaa-actaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    |||||||||||| |||| ||||||||||  ||||||||||||||| ||||||||||| |||||||| ||||||    
T  12215062 tttttagtaaaatacta-gtgggagtagagttgctaacttactccatcatgtttttgagtgggagtaagttag 12214991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 36037435 - 36037367
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaattt 324  Q
    ||||||| | |||||||||||||||||||  ||||||||||||||||||||| ||| || | |||||||    
T  36037435 cctccgtcccaatttataagcaaaaaacacaaattcacacttattaagaaaactaaaacatggtaattt 36037367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 5489638 - 5489596
Alignment:
Q  176 taagtgggagtaggcttgctaacttactccttcatgtttttgg 218  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  5489638 taagtgggagtagacttgctaacttactccttcatatttttgg 5489596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 35884376 - 35884326
Alignment:
Q  289 ttcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||| |||||||||||| |||| ||||||||||| ||||||||||||||    
T  35884376 ttcacatttattaagaaaactaactcttagtaatttgaggtataatttttt 35884326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 339
Target Start/End: Original strand, 6848280 - 6848354
Alignment:
Q  264 ctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    |||||||||||| |||||||| ||||||||| ||||||| |||| ||| | ||||| |||| |||||| |||||||    
T  6848280 ctaatttataagaaaaaaacactaattcacatttattaa-aaaactaataattagtgatttgaggtatgatttttt 6848354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 36384126 - 36384043
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| | ||||||||||||||||| |  | |||||||||||||||||| |||| || |  |||||| || |||||||||||    
T  36384126 cctccgtcccaatttataagcaaaaaatacaatttcacacttattaagaaagttaaaacattataatttgagatataatttttt 36384043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 206
Target Start/End: Original strand, 5491495 - 5491524
Alignment:
Q  177 aagtgggagtaggcttgctaacttactcct 206  Q
    ||||||||||||||||||||||||||||||    
T  5491495 aagtgggagtaggcttgctaacttactcct 5491524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 18970009 - 18969961
Alignment:
Q  177 aagtgggagtaggcttgctaacttactccttcatgtttttgggtgggag 225  Q
    |||||||| ||||||||||||||||||  ||||| ||||| ||||||||    
T  18970009 aagtgggattaggcttgctaacttactatttcatatttttaggtgggag 18969961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 256 - 338
Target Start/End: Complemental strand, 4828 - 4746
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataattttt 338  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| |||||||||||||    
T  4828 cctccgtcctaatttataagcaaaaaacactaattcacacttattaagaaaactaacacttagtgatttgaggtataattttt 4746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 256 - 338
Target Start/End: Complemental strand, 10228110 - 10228028
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataattttt 338  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| |||||||||||||    
T  10228110 cctccgtcctaatttataagcaaaaaacactaattcacacttattaagaaaactaacacttagtgatttgaggtataattttt 10228028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 17721768 - 17721851
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| |||| ||||||||||||||    
T  17721768 cctccgtcctaatttataagcaaaaaacattaattcacacttattaagaaaactaatacttagtgatttgaggtataatttttt 17721851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 5121415 - 5121498
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||| | |||| ||||||| ||||||    
T  5121415 cctccgtcctaatttataagcaaaaaacactaattcacacttattaagaaaactaacacttaatgatttgaggtatagtttttt 5121498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 265 - 339
Target Start/End: Complemental strand, 12278895 - 12278821
Alignment:
Q  265 taatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||||||||||||  ||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  12278895 taatttataagcaaaaaacatcaattcacacttattaagaaaactaacacttagtgatttgaggtataatttttt 12278821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 374297 - 374214
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||| ||||||||||||||||||||| ||||||||| ||||||| |||| ||| ||||||| |||| ||||||||||||||    
T  374297 cctccgtcctaatttataagcaaaaaacactaattcacatttattaaaaaaactaatacttagttatttgaggtataatttttt 374214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 16260861 - 16260790
Alignment:
Q  162 tttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    ||||||||||||  |||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||    
T  16260861 tttttagtaaaaggtaagtgggagtatgcttgctaactcactccttcatgtttttgggtgggagtaagttag 16260790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 16263986 - 16264065
Alignment:
Q  162 tttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttagtagctccc 241  Q
    |||||||| ||||  ||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||| |||||||    
T  16263986 tttttagtcaaaaacaagtgggagtaggcttgataacttactcattcatgtttttgggtgggagtaagttagcagctccc 16264065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 339
Target Start/End: Complemental strand, 30766636 - 30766561
Alignment:
Q  264 ctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| |||| || |||||||||||    
T  30766636 ctaatttataagcaaaaaatactaattcacacttattaagaaaactaacacttagtgatttgagatataatttttt 30766561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 11313985 - 11314056
Alignment:
Q  162 tttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    ||||||||||||| ||||||||||||| ||||||||||||||| ||||| ||||| |||| |||| ||||||    
T  11313985 tttttagtaaaaaataagtgggagtagacttgctaacttactctttcatatttttaggtgagagtaagttag 11314056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 264 - 339
Target Start/End: Complemental strand, 30949325 - 30949250
Alignment:
Q  264 ctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||||||||||| | ||||||||||||||||| |||| ||||| ||| | |||| ||||||||||||||    
T  30949325 ctaatttataagcaaaaaatactaattcacacttattaacaaaactaacatttattgatttgaggtataatttttt 30949250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 11589343 - 11589396
Alignment:
Q  179 gtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagtta 232  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||| |||||    
T  11589343 gtgggagtaagcttgctaacttactccttcatgtttttaggtgggagtaagtta 11589396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 17599510 - 17599464
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaa 302  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||    
T  17599510 cctccgtcctaatttataagcaaaaaacattaattcacacttattaa 17599464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 31887079 - 31887148
Alignment:
Q  256 cctccgttctaatttataagc-aaaaaacagtaattcacacttattaagaaaattaacacttagtaattt 324  Q
    ||||||||||||||||||||| |||||||| ||||| ||||||||||| |||| ||||||| ||| ||||    
T  31887079 cctccgttctaatttataagcaaaaaaacattaatttacacttattaataaaactaacactcagtgattt 31887148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 6052511 - 6052566
Alignment:
Q  177 aagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagtta 232  Q
    ||||| |||||||||||||||||||||| |||||| ||||||||| |||| |||||    
T  6052511 aagtgagagtaggcttgctaacttactctttcatgattttgggtgagagtaagtta 6052566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 16242170 - 16242241
Alignment:
Q  162 tttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    |||||||| ||||  ||||||||||||||||||||||||  ||||| || ||||| ||||||||| ||||||    
T  16242170 tttttagtcaaaaggaagtgggagtaggcttgctaactttatcctttatattttttggtgggagtaagttag 16242241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 32882650 - 32882733
Alignment:
Q  256 cctccgttctaatttataagcaaaaaacagtaattcacacttattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||| ||| |||||||||||||||||    |||||||||||||||||||||  || || | ||| ||| ||||||||||||||    
T  32882650 cctccattccaatttataagcaaaaaattcaaattcacacttattaagaaaacaaaaacattgtagtttgaggtataatttttt 32882733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 17598450 - 17598408
Alignment:
Q  297 tattaagaaaattaacacttagtaatttaaggtataatttttt 339  Q
    ||||||||||||||||||||| | |||| ||||||||||||||    
T  17598450 tattaagaaaattaacacttaatgatttgaggtataatttttt 17598408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 11308333 - 11308277
Alignment:
Q  177 aagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    ||||||| ||||  |||||||||||||||||| |||||||  |||||||| ||||||    
T  11308333 aagtgggggtagatttgctaacttactccttcgtgtttttaagtgggagtaagttag 11308277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0486 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0486
Description:

Target: scaffold0486; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 233
Target Start/End: Original strand, 1519 - 1561
Alignment:
Q  191 ttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    |||||||||||||||||||| |||||||||| |||| ||||||    
T  1519 ttgctaacttactccttcatctttttgggtgcgagtaagttag 1561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 155387 - 155337
Alignment:
Q  162 tttttagtaaaaactaagtgggagtaggcttgctaacttactccttcatgt 212  Q
    ||||||| ||||| |||||||| ||||| || |||||||||||||||||||    
T  155387 tttttaggaaaaaataagtgggggtagggttcctaacttactccttcatgt 155337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 157319 - 157361
Alignment:
Q  180 tgggagtaggcttgctaacttactccttcatgtttttgggtgg 222  Q
    ||||||| || |||||||||||||||||||||||||| |||||    
T  157319 tgggagtgggtttgctaacttactccttcatgtttttaggtgg 157361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 25023 - 24967
Alignment:
Q  177 aagtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtgagttag 233  Q
    ||||||||||||  ||||||||||||||||  ||||||||| ||||| || ||||||    
T  25023 aagtgggagtagatttgctaacttactcctgtatgtttttgagtgggtgtaagttag 24967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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