View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12081_low_7 (Length: 357)
Name: NF12081_low_7
Description: NF12081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12081_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 43070731 - 43070393
Alignment:
| Q |
18 |
atagtcacttcctttgaaaattctcaactaccgtaacttttcaacatgatttgcagttgagaagcatctcttagaaggagagacttctcaacttgaccaa |
117 |
Q |
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| T |
43070731 |
atagtcacttgctttgaaaattctcaactatggtaacttttcaacatgatttgcagttgagaagcatctcttagaaggagagacttctcaacttgaccaa |
43070632 |
T |
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| Q |
118 |
caagagtaatagattgatacttaattttaaaagcaatggtagtttagaagaaaataattaatgtgtgctgtaaag-nnnnnnnnncacaatcacatgagt |
216 |
Q |
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| T |
43070631 |
caagagtaatagattgatacttaattttaaaagcaatggtagtttagaagaaaaaaattaatgtgtgctgtaaagaaaaaaaaaacacaatcacatgagt |
43070532 |
T |
|
| Q |
217 |
tagtgatcatgt----------cttnnnnnnnnnngcccttatgtctctaaaacatgtatctctttgtcttttgtcttgatccgttaatgatttaagact |
306 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
43070531 |
tagtgatcatgtcttaaaaaaactttaaaaaaaaagcccttatgtctctaaaacatgtatctctttgtcttttgtctgcatccgttaatgattaaagact |
43070432 |
T |
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| Q |
307 |
caagaacaagaattaattaaagcatggatgagtctatct |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
43070431 |
caagaacaagaattaattaaagcatggatgagtctatct |
43070393 |
T |
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