View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12081_low_9 (Length: 327)
Name: NF12081_low_9
Description: NF12081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12081_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 318
Target Start/End: Original strand, 32708762 - 32709057
Alignment:
| Q |
19 |
tattgagggatgttgaaagtatcaagctcctcttcttttatggttccctaatccacagaaaaaaggaatttcatatatattaatatcttggtgaattcga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||| |
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| T |
32708762 |
tattgagggatgttgaaagtatcaagctcctcttcttttatggttccctaatccacataaaaaaggaatttcatat----tagtatcttggtgaattcga |
32708857 |
T |
|
| Q |
119 |
tctatctagtagtgacgcatgatcaaatatcaacactaacacattatatttaggatgtcacaatttacctgcaagaccatatcattaagagctatagcca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32708858 |
tctatctagtagtgacgcatgatcaaatatcaacactaacacattatatttaggatgtcacaatttacctgcaagaccatatcattaagagctatagcca |
32708957 |
T |
|
| Q |
219 |
taagttcccaaatgtagcaacactccttgctatacttcttgtcactttttcttcctaaaaatgttagaatcatgcgaccaccttcaactacttcctttgc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32708958 |
taagttcccaaatgtagcaacactccttgctatacttcttgtcactttttcttcctaaaaatgttagaatcatgcgaccaccttcaactacttcctttgc |
32709057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 182 - 308
Target Start/End: Original strand, 32627340 - 32627466
Alignment:
| Q |
182 |
tttacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgctatacttcttgtcactttttcttcctaaaaatg |
281 |
Q |
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||||||| ||||||||| ||||||||||| ||||||| ||||||||||||||| |||||||||||||| ||||| ||||||||||||| ||||| |
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| T |
32627340 |
tttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcctacaaatg |
32627439 |
T |
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| Q |
282 |
ttagaatcatgcgaccaccttcaacta |
308 |
Q |
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||| |||||||| ||| |||||||||| |
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| T |
32627440 |
ttataatcatgcaacccccttcaacta |
32627466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 32703490 - 32703557
Alignment:
| Q |
182 |
tttacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgct |
249 |
Q |
| |
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||||||||||||||||| ||||||||| | |||||||||| |||||||| ||| |||||||| ||||| |
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| T |
32703490 |
tttacctgcaagaccatttcattaagacccatagccataacttcccaaacgtaacaacactctttgct |
32703557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 308
Target Start/End: Original strand, 27736240 - 27736364
Alignment:
| Q |
184 |
tacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgctatacttcttgtcactttttcttcctaaaaatgtt |
283 |
Q |
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|||||||||||||||||||||||| || |||||||| |||||||||||||| |||||||||||||| | ||||| | ||| |||||||||| |||| |
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| T |
27736240 |
tacctgcaagaccatatcattaagggccatagccatgagttcccaaatgtaacaacactccttgcttgatggattgtcgcatttccttcctaaaagtgtt |
27736339 |
T |
|
| Q |
284 |
agaatcatgcgaccaccttcaacta |
308 |
Q |
| |
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|||||||| || | |||||||||| |
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| T |
27736340 |
agaatcatttgagctccttcaacta |
27736364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 184 - 308
Target Start/End: Original strand, 5810967 - 5811091
Alignment:
| Q |
184 |
tacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgct--atacttc-ttgtcactttttcttcctaaaaat |
280 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| |||||||||||||| | | |||||||||| || || ||| |||||| |||||||||| |
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| T |
5810967 |
tacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagactccttgcttgatggatcactgt---tttttcgtcctaaaaat |
5811063 |
T |
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| Q |
281 |
gttagaatcatgcgaccaccttcaacta |
308 |
Q |
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|||||||||||| ||||||||||||||| |
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| T |
5811064 |
gttagaatcatgtgaccaccttcaacta |
5811091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 306
Target Start/End: Complemental strand, 8030641 - 8030519
Alignment:
| Q |
184 |
tacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgctatacttcttgtcactttttcttcctaaaaatgtt |
283 |
Q |
| |
|
||||| ||||||||| |||||||| || | ||| | ||| |||||||| ||||||||||| |||||||| || | |||||||||||||| || | ||| |
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| T |
8030641 |
tacctccaagaccatgtcattaagggcaacagcaagaagctcccaaatatagcaacactctttgctatatttatcatcactttttcttcccaagattgtg |
8030542 |
T |
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| Q |
284 |
agaatcatgcgaccaccttcaac |
306 |
Q |
| |
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|||| ||| ||||| || ||||| |
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| T |
8030541 |
agaaccatacgacccccgtcaac |
8030519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 21943087 - 21943132
Alignment:
| Q |
184 |
tacctgcaagaccatatcattaagagctatagccataagttcccaa |
229 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| |||||||||| |
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|
| T |
21943087 |
tacctgcataaccatatcattaagagccatagccaaaagttcccaa |
21943132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 20116800 - 20116764
Alignment:
| Q |
194 |
accatatcattaagagctatagccataagttcccaaa |
230 |
Q |
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|||||||||||||||||| |||||| ||||||||||| |
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| T |
20116800 |
accatatcattaagagctgtagccaaaagttcccaaa |
20116764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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