View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12082_high_1 (Length: 643)
Name: NF12082_high_1
Description: NF12082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12082_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 17 - 633
Target Start/End: Complemental strand, 45447459 - 45446847
Alignment:
| Q |
17 |
acttttaagctacaagatgggagtagtggtgagaaatttggttagtgtgtgtgcatgaacaatgaagtttcagtctctatttgcagtctgatagcaaagt |
116 |
Q |
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| T |
45447459 |
acttttaagctacaagatgggagtagtggtgagaaatttggttagtgtg----catgaacaatgaagtttcagtctctatttgcagtctgatagcaaagt |
45447364 |
T |
|
| Q |
117 |
tgaacttgaaggcttataccaatgacaacaacgatatgcccaaccaggatctttcttaattatgatggaaattttagtttaaaaatagcttataatgtca |
216 |
Q |
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| T |
45447363 |
tgaacttgaaggcttataccaatgacaacaacgatatccccaaccaggatctttcttaattatgatggaaattttagtttaaaaatagcttataatgtca |
45447264 |
T |
|
| Q |
217 |
ttactattagtggtttggatagtgatactactaataatcattattatttgtttcatcatgtttgacattggaaaggtccaactcagattcttgcaattct |
316 |
Q |
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| T |
45447263 |
ttactattagtggtttggatagtgatactactaataatcattattatttgtttcatcatgtttgacattggaaaggtccaactcagattcttgcaattct |
45447164 |
T |
|
| Q |
317 |
ttgaaagcttgcttgtatggatctttgcttacaaatgcagtgagagttggcgtgcaaatggtgacacatggcctcagtgtcatcacttgcttagcgatcg |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45447163 |
ttgaaagcttgcttgtatggatctttgcttacaaatgcagtgagagttggctggcaaatggtgacacatggcctcagtgccatcacttgcttagcgatcg |
45447064 |
T |
|
| Q |
417 |
cgaggttgttcaacaatattggaaccaattcatcaccaaagacaattggactaaattcttaagcctccgtttacatgcttgcgcacccgtttttaagatt |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
45447063 |
cgaggttgttcaacaatattggaaccaattcatcaccaaagacaattggactaaattcttaagcctccgtttacatgcttgcgaacccgtttttcagatt |
45446964 |
T |
|
| Q |
517 |
ttggatgccttggtcgaccgtcctctttaccttgcctcatatacaaccatgcatgcttggtatgaatgcaatattacaactaagaacattagagttagca |
616 |
Q |
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| T |
45446963 |
ttggatgccttggtcgaccgtcctctttaccttgcctcatatacaaccatgcatgcttggtatgaatgcaatattacaactaagaacattagagttagca |
45446864 |
T |
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| Q |
617 |
attgtaattgacctatg |
633 |
Q |
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| T |
45446863 |
attgtaattgacctatg |
45446847 |
T |
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