View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12082_high_12 (Length: 297)
Name: NF12082_high_12
Description: NF12082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12082_high_12 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 24 - 297
Target Start/End: Original strand, 31409596 - 31409869
Alignment:
| Q |
24 |
cataaactataggacgatgatgcagaattagaagaccatgtcaacataaacccacctcgaaaatttgattaaaatcggaaaatgaattagaccaaaacaa |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31409596 |
cataaactataggacgatgatgcagaattagaagaccacgtcaacataaacccacttagaaaatttgattaaaatcgaaaaatgaattagaccaaaacaa |
31409695 |
T |
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| Q |
124 |
agccaatttctaagccttagacatataccatgacannnnnnnaaataaatgtatgttgtatacattttgacatgagaacagtaataacatgtaccaaata |
223 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31409696 |
agccaatttctaagccttagacatataccatgacattttttaaaataaatgtatattgtatacattttgacatgagaacagtaataacatgtaccatatg |
31409795 |
T |
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| Q |
224 |
gacctattaagaaacctagtctggctgagatatttcctgttgttcatgctgaggatattgcttcatatctagcc |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31409796 |
gacctattaagaaacctagtctggctgagatatttcctgttgttcatgctgaggatattgcttcatatctagcc |
31409869 |
T |
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