View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12082_high_13 (Length: 285)
Name: NF12082_high_13
Description: NF12082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12082_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 33 - 272
Target Start/End: Original strand, 490491 - 490725
Alignment:
| Q |
33 |
aatgacgtatcacaaatgttttgtaatccttgcctcatcaggtaatgat-atgtcaacttattgagatgagaacgttaaaggatcaaaatgaccagattg |
131 |
Q |
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| T |
490491 |
aatgacgtgtcacaaatgttttgtaatccttgcctcatcaactaatgatgatgtcaacttattgagatgataacgttaaaggatcaaaatgatcagattg |
490590 |
T |
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| Q |
132 |
aaaaagtaatagaggggaagggatttggggggttttaacttttcttgaaaggatataatgcgtacatatagagtgctatcccacacttaccatcctttta |
231 |
Q |
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| T |
490591 |
aaaaagtaatagaggggaagggatttgggggtttttaacttttcttgaaaggatacaatgcctacatat--agtgctatcccacacttaccatcctttta |
490688 |
T |
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| Q |
232 |
acacatacttttccatcttgtatgtataatcattctcaccc |
272 |
Q |
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| T |
490689 |
acacatacttttccatct----tgtataatcattctcaccc |
490725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 45 - 247
Target Start/End: Original strand, 492882 - 493082
Alignment:
| Q |
45 |
caaatgttttgtaatccttgcctcatcaggtaatgatatgtcaacttattgagatgagaacgttaaaggatcaaaatgaccagattgaaaaagtaataga |
144 |
Q |
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|||||| |||||||||||||||||||||| |||| ||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| || || |
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| T |
492882 |
caaatgctttgtaatccttgcctcatcagctaatcttatgtcaacttattgagatgataacgttgaaggatcaaaatgaccagattaaaaaagtgatgga |
492981 |
T |
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| Q |
145 |
ggggaagggatttggggggttttaacttttcttgaaaggatataatgcgtacatatagagtgctatcccacacttaccatccttttaacacatacttttc |
244 |
Q |
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| T |
492982 |
ggggaagggatttggagggttctgacttttcttgatagaatataatggctac--atacattgttatcctacacttacaattcttttaacacattcttttc |
493079 |
T |
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| Q |
245 |
cat |
247 |
Q |
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||| |
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| T |
493080 |
cat |
493082 |
T |
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