View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12082_high_4 (Length: 443)
Name: NF12082_high_4
Description: NF12082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12082_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 22219223 - 22219338
Alignment:
| Q |
1 |
tatgttttggcccatgcattcatcacataaggatcattcactacaaaagtttaactaatccaatctcacgaaactactcatctagcttacataattaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22219223 |
tatgttttggcccatgcattcatcacataaggatcattcactacaaaagtttaactaatccaatctcataaaactactcatctagcttacataattaacc |
22219322 |
T |
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| Q |
101 |
cgagtgatcatagtgc |
116 |
Q |
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| T |
22219323 |
caagtgatcatagtgc |
22219338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 33103307 - 33103407
Alignment:
| Q |
16 |
gcattcatcacataaggatcattcactacaaaagtttaactaatccaatctcacgaaactactcatctagcttacataattaacccgagtgatc-atagt |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| || ||||||||||||||||||||| || ||||||| ||||| |
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| T |
33103307 |
gcattcatcacataaggatcattcactacaaaagtttaattaatctaatctc---aaattagtcatctagcttacataattaatccaagtgatcgatagt |
33103403 |
T |
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| Q |
115 |
gcat |
118 |
Q |
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|||| |
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| T |
33103404 |
gcat |
33103407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 195 - 402
Target Start/End: Original strand, 44176974 - 44177174
Alignment:
| Q |
195 |
ttgagaacttacgaggcaattagcatgcaacttgcaatgatgcctagcggtttaagtttctgtcttttgatgtaacttttggagagaaatcaatctatga |
294 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||| ||| |||| ||| | ||| ||| || ||||||||||||| |||||||||| |
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| T |
44176974 |
ttgagaacttacgaggcaattagcatgcaagt------gatgcctagcagttgaagtctctttatttcaatggaatttttggagagaaaccaatctatga |
44177067 |
T |
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| Q |
295 |
gatatacagtgagataaaaaagtgtttgcttgcattttgtattcctcagaaacctgaaaacaaagttcaacacaagttaattcaatgtaaattgtcatat |
394 |
Q |
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|||| |||||||| |||| | ||||||||||||| ||| ||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| |
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| T |
44177068 |
gatacacagtgaggtaaaga-gtgtttgcttgcaaattgaattgctcagaaacctgaaaacaaagttcaacacaagcaaattcgatgtaaattgtaatat |
44177166 |
T |
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| Q |
395 |
tcatattt |
402 |
Q |
| |
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|||||||| |
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| T |
44177167 |
tcatattt |
44177174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 195 - 352
Target Start/End: Original strand, 44170174 - 44170324
Alignment:
| Q |
195 |
ttgagaacttacgaggcaattagcatgcaacttgcaatgatgcctagcggtttaagtttctgtcttttgatgtaacttttggagagaaatcaatctatga |
294 |
Q |
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|||||||||||||||||||||||||||||| | ||||| ||| | | |||| ||| ||||| || || ||||||||||||| ||||| |||| |
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| T |
44170174 |
ttgagaacttacgaggcaattagcatgcaagta------atgccaagcagctgaagtctctctctttcaatacaatttttggagagaaaccaatcaatga |
44170267 |
T |
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| Q |
295 |
gatatacagtgagataaaaaagtgtttgcttgcattttgtattcctcagaaacctgaa |
352 |
Q |
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||||||||||||| | ||| |||||||||||||| ||||||| ||||||||||||||| |
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| T |
44170268 |
gatatacagtgaggt-aaagagtgtttgcttgcaatttgtatccctcagaaacctgaa |
44170324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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