View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12082_high_6 (Length: 393)
Name: NF12082_high_6
Description: NF12082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12082_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 12 - 378
Target Start/End: Complemental strand, 1097644 - 1097263
Alignment:
| Q |
12 |
gttatagctttggttgaagattggtcagcaacaataacccatgatagagagaggtcaagaaagagttgagatttattnnnnnnntaagattgtcatattg |
111 |
Q |
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| T |
1097644 |
gttatagctttggttgaagattggtcagcaacaataacccatgatagagagaggtcaagaaagagttgagatttattaaaaaaataagattatcatattg |
1097545 |
T |
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| Q |
112 |
cttttcacaaatcgttgctttaaattgaggctattttttgttagtaaagctcgagtt-------------ggggatgcaatttctgggtttgaaacccat |
198 |
Q |
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| T |
1097544 |
cttttcacaaatcgttgctttaaattgaggctattttttgttagtaaagctcgagttcagaaaggggaggggggatgcaatttctgggtttgaaacccat |
1097445 |
T |
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| Q |
199 |
aaatttaaagggaaagaagaatatccaattttattaatttgggatttttgttattttaatnnnnnnntattttttcgaatccaacaagggcttgccatca |
298 |
Q |
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| T |
1097444 |
aaatttaaagggaaagaagaatacccaattttattaatttgggatttttgttattttaataaaaatatattttttcgaatccaacaagggcttgccatca |
1097345 |
T |
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| Q |
299 |
caacatttttaatacatgtcagcgttt--nnnnnnnntggaaaattggataacgaaaatgagtggcatcgtagccacacaaa |
378 |
Q |
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| T |
1097344 |
catcatttttaatacatgtcagcgtttaaaaaaaaaatggaaaattggataacgaaaatgagtggcatcgtagccacacaaa |
1097263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 1110791 - 1110725
Alignment:
| Q |
12 |
gttatagctttggttgaagattggtcagcaacaataacccatgatagagagaggtcaagaaagagtt |
78 |
Q |
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| T |
1110791 |
gttatagctttgattgaagattagtcagcaacaataagccatgatagagagagttcaagaaagagtt |
1110725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 1110667 - 1110592
Alignment:
| Q |
96 |
taagattgtcatattgcttttcacaaatcgttgctttaaattgaggc---tattttttgttagtaaagctcgagtt |
168 |
Q |
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| T |
1110667 |
taagattatcatattgcttttcacaaatcattgctttaaatcgaggctcattttttttgttagtgaagctcgagtt |
1110592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 8107907 - 8107847
Alignment:
| Q |
198 |
taaatttaaagggaaagaagaatatccaattttattaatttgggatttttgttattttaat |
258 |
Q |
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| T |
8107907 |
taaatttaaaggaaatgaaaaacacccaaatttattaatttgggatttttgttattttaat |
8107847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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