View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12082_high_7 (Length: 369)
Name: NF12082_high_7
Description: NF12082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12082_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 6 - 353
Target Start/End: Complemental strand, 31785027 - 31784680
Alignment:
| Q |
6 |
caaaggctcgtcaacgtcaaagaaatcttaagattcagagatcacttgcgcttaacagaggtccctacatcgacaatgagctgaattcttaccaaccaga |
105 |
Q |
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| T |
31785027 |
caaaggctcgtcaacgtcaaagaaagcttaagattcagagatcacttgcacttaacagaggtccctacatcgacaatgagctgaattcttaccaaccaga |
31784928 |
T |
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| Q |
106 |
caaatttacattggcagttcccttacaagtttaaatcaagatggaaaaatgaattttatattggttttaactgttgagtatttaaataatagtccaagat |
205 |
Q |
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| T |
31784927 |
caaatttacattggcagttcctttataagtttaaatcaagatggaaaaatgaattttatattggttttaactgttgagtatttaaataatagtccaagat |
31784828 |
T |
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| Q |
206 |
taaccggtgaaaatgttatctctatctgaaaactatggaagatagaaacttgtggagcttgacaactttgaaaaagtaaaaatgaaaatgagtatcttcc |
305 |
Q |
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| T |
31784827 |
tgaccggtgaaaatgttatctctatctgaaaactatggaagatagaaacttgtggagcttgacaactttgaaaaagtaaaaatgaaaatgagtatcttcc |
31784728 |
T |
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| Q |
306 |
atataagtaagtatctgtttcgaatttaggtaagcttccaataaaaac |
353 |
Q |
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| T |
31784727 |
atataagtaagtatctgtttcgaatttaggtaagcttccaataaaaac |
31784680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 40 - 299
Target Start/End: Complemental strand, 31789960 - 31789693
Alignment:
| Q |
40 |
tcagagatcacttgcgcttaacagaggtccctacatcgacaatgagctgaattcttaccaaccagacaaatttacattggcagttcccttacaagtttaa |
139 |
Q |
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| T |
31789960 |
tcagagatctcttgcacttag-agaggtccctacatcgacaatgagctgaattcttaccaacctgacaaacttacattggcagttccttcataagtttaa |
31789862 |
T |
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| Q |
140 |
atcaagatggaaaaatgaattttatattggttttaactgttgagtatttaaataatagtccaagattaaccggtgaaaatgttatctctatctg------ |
233 |
Q |
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| T |
31789861 |
atcaagatggaaaattgaattttatattggtttaaaccgttgagtatttaaataatagtccaagattgactgatgaaaatgttatctctatctgaaaaat |
31789762 |
T |
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| Q |
234 |
---aaaactatggaagatagaaacttgtggagcttgacaactttgaaaaagtaaaaatgaaaatgagta |
299 |
Q |
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| T |
31789761 |
ctgaaaactatggaagatagaaatttgtggagcttcataactttgaaagagtaaaaatgaaaatgagta |
31789693 |
T |
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