View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12082_low_1 (Length: 1361)
Name: NF12082_low_1
Description: NF12082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12082_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 827 - 1346
Target Start/End: Complemental strand, 51039734 - 51039223
Alignment:
| Q |
827 |
agtattgtatctgaaacataaatcaatggacctcttgtcctggattctagacggagtagcttcaattatcatatctcaagctgaaatttcatgcatgctt |
926 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
51039734 |
agtattgtatctgaaacataaatcaatggacctcttgtcctggattctagacggagtagcttcaattatcatatctcaagctgaaatttcatgcatactt |
51039635 |
T |
|
| Q |
927 |
gaaatgtttttcacactttcaatatgatgacatcaacattttggcatctctcatcctcaatcttgtatgtctaataaaacaatttggtagacgtggacac |
1026 |
Q |
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| T |
51039634 |
gaaatgtttttcacactttcaatatgatgacatcaacattttggcatctctcatcctcaatcttgtatgtctaataaaacaatttggtagacgtggacac |
51039535 |
T |
|
| Q |
1027 |
ctcaattgatgtatgcatcttgcaagaaaaatttacaaaagaaaatgatgtgatataaatgatagattagtaatgcactaatgttgtttggtacgaaaat |
1126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
51039534 |
ctcaattgatgtatgcatcttgcaagaaaaatttacaaaagaaaatgatgtgatataaatgatagattagtaatgcactaatgttgtatggtacgaaaat |
51039435 |
T |
|
| Q |
1127 |
agtatatacgaaaagcaagaattaaactaaattaaagttgtaattaccaataaatacatcaacaattttctatatcaccatattacccttatatggcaag |
1226 |
Q |
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||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
51039434 |
agtatctacgaaaagcaagaattacactaaattaaagttgtaattaccaataaatccatcaacaattttatatatcaccatattacccttatatggcaag |
51039335 |
T |
|
| Q |
1227 |
tgctttcttactgtcttcaaatttcgttaaaagctttccgtacaacatagcaatgattagagagatagagaagnnnnnnnnnntgaagtattaaatgaat |
1326 |
Q |
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| T |
51039334 |
tgctttcttactg---tcaaatttcgttaaaagctttccgtacgacatagcaatgattagagagatagagaa-----aaaaaatgaagtattaaatgaat |
51039243 |
T |
|
| Q |
1327 |
gtttgaaaatttatgatgtc |
1346 |
Q |
| |
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|||||||||||||||||||| |
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| T |
51039242 |
gtttgaaaatttatgatgtc |
51039223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 16 - 355
Target Start/End: Complemental strand, 51040551 - 51040212
Alignment:
| Q |
16 |
atatacacttatatatatttagagtgtggattgacatttgatgtattgagacataaaattgaaactcttgatacnnnnnnncgctacacttnnnnnnnta |
115 |
Q |
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| T |
51040551 |
atatacacttatatatatttagagtgtggattgacatctgatgtattgagacataaaattgaaactcttgatactttttttcgctacacttaaaaaaata |
51040452 |
T |
|
| Q |
116 |
tgaatatatctaaaaatttataaattgacttatattaaataaggagattttataattggagagtannnnnnnnaataatgttttgattcatatatatcat |
215 |
Q |
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| T |
51040451 |
tgaatatatctaaaaatttataaattgacttatattaaataaggagattttataattggagagtattttttttaataatgttttgattcatatatatcat |
51040352 |
T |
|
| Q |
216 |
catgtcacctcacctgggattatcataaggatatgttacgtatgtatggggtgccaccataactaactaattatgacttttcttcctttagatcagatct |
315 |
Q |
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| T |
51040351 |
catgtcacctcacctgggattatcataaggatatgttacgtatgtatggggtgccaccataactaactaattatgacttttcttcctttagattagatct |
51040252 |
T |
|
| Q |
316 |
gtctttttcttttagcctccagcagcgagtgtctgggcca |
355 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||| |
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| T |
51040251 |
gtctttttcttttagcctccagcaacgagtgtctgggcca |
51040212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 438 - 757
Target Start/End: Complemental strand, 51040129 - 51039795
Alignment:
| Q |
438 |
ccttctctccacaacttgttatttgtttatacacttctcaattaaaattttactaattgatcaccgtatatatttcgtgttaggaaaaatatttgttatt |
537 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
51040129 |
ccttctctccacaacttgttatttgtttatacacttctcaattaaaattttactaattgatcaccgtatagatttcgtgttaggaaaaatatttgttatt |
51040030 |
T |
|
| Q |
538 |
ttaattttaattgagtatagtgtttgacattttaattttgacttactaaggaaaataaataaattgttttacatcgaacatttgaaaaataaattatgtt |
637 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||| | || |
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| T |
51040029 |
ttaattttaattgagtatagtgtttgacattttaattttgacttcctaaggaaaataaattaattgttttacatcgaacatttgaaaaaaaaaaattatt |
51039930 |
T |
|
| Q |
638 |
tcttttaaaggccgactaaa---------------ttagataagatgtgtaatatgattagagcaaaagcaaagacaacgcaaagagcataatgacgacc |
722 |
Q |
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|||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
51039929 |
tcttttaaaggccgactaaattagtaaacactaatttagacaagatgtgtactatgattagagcaaaagcaaagacaacgcaaagagcagaatgacgacc |
51039830 |
T |
|
| Q |
723 |
cacagaacacagcacatcgataacaaaatcaaata |
757 |
Q |
| |
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|||| ||||||||||||||||||| |||||||||| |
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| T |
51039829 |
cacaaaacacagcacatcgataactaaatcaaata |
51039795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 6e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 1142 - 1281
Target Start/End: Original strand, 12170179 - 12170318
Alignment:
| Q |
1142 |
caagaattaaactaaattaaagttgtaattaccaataaatacatcaacaattttctatatcaccatattacccttatatggcaagtgctttcttactgtc |
1241 |
Q |
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||||||||| ||||| |||||||||||||||||||| || ||||| | ||||||||||| |||||||| ||||| ||||||||||| |||| ||||||| |
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| T |
12170179 |
caagaattacactaatttaaagttgtaattaccaatctatccatcagctattttctatattaccatattgcccttgtatggcaagtgttttcctactgtc |
12170278 |
T |
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| Q |
1242 |
ttcaaatttcgttaaaagctttccgtacaacatagcaatg |
1281 |
Q |
| |
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| T |
12170279 |
gtataatttcgttaaaatcttttcttactatatagcaatg |
12170318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 1134 - 1281
Target Start/End: Original strand, 45473189 - 45473336
Alignment:
| Q |
1134 |
acgaaaagcaagaattaaactaaattaaagttgtaattaccaataaatacatcaacaattttctatatcaccatattacccttatatggcaagtgctttc |
1233 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||| || ||||| | ||||||||||| ||||||| ||||| ||||||||||| ||| |
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| T |
45473189 |
acgaaaagcaagaattacactaatttaaagttgtaattaccaatctatccatcagctattttctatattaccatatcgcccttgtatggcaagtgttttt |
45473288 |
T |
|
| Q |
1234 |
ttactgtcttcaaatttcgttaaaagctttccgtacaacatagcaatg |
1281 |
Q |
| |
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||||||| | ||||||||||||| |||| | ||| | ||||||||| |
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| T |
45473289 |
ctactgtcgtataatttcgttaaaatcttttcttactatatagcaatg |
45473336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 9e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 1133 - 1228
Target Start/End: Original strand, 31195838 - 31195933
Alignment:
| Q |
1133 |
tacgaaaagcaagaattaaactaaattaaagttgtaattaccaataaatacatcaacaattttctatatcaccatattacccttatatggcaagtg |
1228 |
Q |
| |
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|||||||||||||||||| ||||| ||||||||||||||||| ||| || ||||| | ||||||||||| ||||| || ||||| |||| |||||| |
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| T |
31195838 |
tacgaaaagcaagaattacactaatttaaagttgtaattaccgatatatccatcagccattttctatattaccatgttgcccttgtatgacaagtg |
31195933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1134 - 1201
Target Start/End: Complemental strand, 14018009 - 14017942
Alignment:
| Q |
1134 |
acgaaaagcaagaattaaactaaattaaagttgtaattaccaataaatacatcaacaattttctatat |
1201 |
Q |
| |
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||||||||||||||||| ||||| || ||||||||||||||||| || || || | ||||||||||| |
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| T |
14018009 |
acgaaaagcaagaattacactaattttaagttgtaattaccaatctattcaacagctattttctatat |
14017942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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