View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12082_low_10 (Length: 361)

Name: NF12082_low_10
Description: NF12082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12082_low_10
NF12082_low_10
[»] chr5 (5 HSPs)
chr5 (21-345)||(24108756-24109077)
chr5 (23-104)||(671522-671603)
chr5 (22-113)||(41709559-41709650)
chr5 (22-113)||(8123587-8123678)
chr5 (22-113)||(10321869-10321959)
[»] chr2 (5 HSPs)
chr2 (22-113)||(31211872-31211963)
chr2 (23-97)||(45327420-45327494)
chr2 (30-104)||(31193244-31193318)
chr2 (64-114)||(40400908-40400958)
chr2 (53-85)||(28860841-28860873)
[»] chr4 (7 HSPs)
chr4 (23-114)||(36053982-36054073)
chr4 (23-113)||(36050723-36050813)
chr4 (23-113)||(27387680-27387770)
chr4 (23-113)||(24733676-24733766)
chr4 (39-111)||(12638086-12638158)
chr4 (23-113)||(55322334-55322425)
chr4 (80-113)||(10129632-10129665)
[»] chr1 (5 HSPs)
chr1 (22-113)||(18583886-18583977)
chr1 (22-113)||(23405475-23405566)
chr1 (22-113)||(21075941-21076032)
chr1 (33-113)||(16544449-16544529)
chr1 (22-106)||(9893802-9893886)
[»] chr7 (8 HSPs)
chr7 (22-113)||(42513062-42513153)
chr7 (39-113)||(41712368-41712442)
chr7 (23-126)||(30456366-30456469)
chr7 (23-113)||(30452757-30452847)
chr7 (22-113)||(6102961-6103053)
chr7 (22-103)||(11206530-11206611)
chr7 (23-116)||(49017187-49017280)
chr7 (70-113)||(4257365-4257408)
[»] chr3 (8 HSPs)
chr3 (22-114)||(36326549-36326641)
chr3 (22-113)||(14029386-14029477)
chr3 (72-113)||(19798051-19798092)
chr3 (72-113)||(19798296-19798337)
chr3 (76-113)||(1830902-1830939)
chr3 (72-113)||(18319509-18319550)
chr3 (82-113)||(30911613-30911644)
chr3 (76-113)||(30912148-30912185)
[»] chr8 (6 HSPs)
chr8 (158-283)||(3124042-3124165)
chr8 (22-113)||(44762026-44762117)
chr8 (22-113)||(44765333-44765424)
chr8 (33-111)||(11825070-11825148)
chr8 (267-337)||(3126902-3126968)
chr8 (80-113)||(32519623-32519656)
[»] chr6 (7 HSPs)
chr6 (22-113)||(4834778-4834869)
chr6 (22-113)||(7422706-7422797)
chr6 (22-113)||(13886600-13886691)
chr6 (22-113)||(33242907-33242998)
chr6 (22-113)||(7426645-7426736)
chr6 (22-113)||(7415698-7415789)
chr6 (80-114)||(16389216-16389250)


Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 21 - 345
Target Start/End: Original strand, 24108756 - 24109077
Alignment:
Q  21 ccaatgaaaaatataatgaatttcctttcgtttgtctctagttttctcccttaatttctggagtgtgatccctactcgaattgggtcgtatcacttagtt 120  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24108756 ccaatgaaaaatataatgaatttccttttgtttgtctctagttttcttccttaatttctggagtgtgatccctactcgaattgggtcgtatcacttggtt 24108855  T
Q  121 tatgcagtttgtatgggtcagtggataaatttacaaattgtttcttttgtatattatttcaataatgtcattgaatgtatgaagttagacatgccttttt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||| |||||||||||||||||||||||    
T  24108856 tatgcagtttgtatgggtcagtggataaatttacaaattgtttcttttgtatattatttcaat---gtcattgaatatatgaagttagacatgccttttt 24108952  T
Q  221 tggttcagtaagttacggatactttcaagtttaacatattttctaaactggtatgctgttattataacaaaaacagaatttgatataacataccaatgca 320  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24108953 tggttcagtaagttacgcatactttcaagtttaacatattttctaaactggtatgctgttattataacaaaaacagaatttgatataacataccaatgca 24109052  T
Q  321 gtttgatttgcataattaagggaaa 345  Q
    |||||||||||||||||||||||||    
T  24109053 gtttgatttgcataattaagggaaa 24109077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 671522 - 671603
Alignment:
Q  23 aatgaaaaatataatgaatttcctttcgtttgtctctagttttctcccttaatttctggagtgtgatccctactcgaattgg 104  Q
    ||||||||||||||||||||| ||||| ||| ||||||| |||||| ||||||||||| ||||||||||| |||||||||||    
T  671522 aatgaaaaatataatgaattttctttcttttatctctagctttctctcttaatttctgaagtgtgatcccaactcgaattgg 671603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 41709559 - 41709650
Alignment:
Q  22 caatgaaaaatataatgaatttcctttcgtttgtctctagttttctccct-taatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    |||||||||||||||||||||| |||||  || ||| |||||| |||||| ||| ||||||||||||||| ||||||||||||||||||||||    
T  41709559 caatgaaaaatataatgaattttctttctcttttctatagttt-ctccctctaaattctggagtgtgatctctactcgaattgggtcgtatca 41709650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 8123587 - 8123678
Alignment:
Q  22 caatgaaaaatataatgaatttcctttcgtttgtctctagttttctccct-taatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    |||||||||||||||||||||| |||||  || ||| || ||| |||||| ||||||||| |||||||||| |||||||||||||||||||||    
T  8123587 caatgaaaaatataatgaattttctttctcttttctttaattt-ctccctctaatttctgaagtgtgatccatactcgaattgggtcgtatca 8123678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 10321959 - 10321869
Alignment:
Q  22 caatgaaaaatataatgaatttcctttcgtttgtctctagttt-tctcccttaatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    |||||||||| |||||||||||||||||  || ||||||| || |||| || ||||  ||||||||||||||||||| |||||||||||||||    
T  10321959 caatgaaaaa-ataatgaatttcctttctcttatctctagcttatctctctaaatta-tggagtgtgatccctactcaaattgggtcgtatca 10321869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 31211872 - 31211963
Alignment:
Q  22 caatgaaaaatataatgaatttcctttcgtttgtctctagttttctcccttaatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    |||||||||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  31211872 caatgaaaaatataatgaattttctttcttttatctctagttttctctcttaatttctggagtgtgatccctactcgaattggatcgtatca 31211963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 45327494 - 45327420
Alignment:
Q  23 aatgaaaaatataatgaatttcctttcgtttgtctctagttttctcccttaatttctggagtgtgatccctactc 97  Q
    ||||||||||||||| |||||| |||| ||| |||||| ||||||| ||||||||||||||||||||||||||||    
T  45327494 aatgaaaaatataataaatttcttttcttttatctctaattttctctcttaatttctggagtgtgatccctactc 45327420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 31193244 - 31193318
Alignment:
Q  30 aatataatgaatttcctttcgtttgtctctagttttctcccttaatttctggagtgtgatccctactcgaattgg 104  Q
    |||||||| ||||| ||||| ||  |||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  31193244 aatataataaattttctttctttcatctctagttttctctcttaatttctagagtgtgatccctactcgaattgg 31193318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 40400958 - 40400908
Alignment:
Q  64 ttctcccttaatttctggagtgtgatccctactcgaattgggtcgtatcac 114  Q
    ||||| || ||||||||||||||||||||||||||||||| ||| ||||||    
T  40400958 ttctctctaaatttctggagtgtgatccctactcgaattgagtcatatcac 40400908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 28860841 - 28860873
Alignment:
Q  53 tgtctctagttttctcccttaatttctggagtg 85  Q
    |||||||||||||||| ||||||||||||||||    
T  28860841 tgtctctagttttctctcttaatttctggagtg 28860873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 36053982 - 36054073
Alignment:
Q  23 aatgaaaaatataatgaatttcctttcgtttgtctctagttttctcccttaatttctggagtgtgatccctactcgaattgggtcgtatcac 114  Q
    |||||||||||||||||||||| |||| ||| ||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||    
T  36053982 aatgaaaaatataatgaatttcttttcttttatctctagttttctcttttaatttttggagtgtgatccctactcgaattgggtcgtatcac 36054073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 36050723 - 36050813
Alignment:
Q  23 aatgaaaaatataatgaatttcctttcgtttgtctctagttttctcccttaatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    |||||||||||||||||||||| |||| ||| ||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||    
T  36050723 aatgaaaaatataatgaatttcttttcttttatctctagttttctcttttaatttttggagtgtgatccctactcgaattgggtcgtatca 36050813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 27387680 - 27387770
Alignment:
Q  23 aatgaaaaatataatgaatttcctttcgtttgtctctagttttctccct-taatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    |||||||||||||||||||||| |||| ||  |||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  27387680 aatgaaaaatataatgaatttcttttccttcatctctagttt-ctccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 27387770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 24733676 - 24733766
Alignment:
Q  23 aatgaaaaatataatgaatttcctttcgtttgtctctagttttctcccttaatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    ||||||||||||||||||||||||||| ||| | |||||||||||| |||||| |||  ||||||||||||||| ||||||||| ||||||    
T  24733676 aatgaaaaatataatgaatttcctttcttttatatctagttttctctcttaatatctaaagtgtgatccctacttgaattgggtggtatca 24733766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 12638086 - 12638158
Alignment:
Q  39 aatttcctttcgtttgtctctagttttctcccttaatttctggagtgtgatccctactcgaattgggtcgtat 111  Q
    ||||||||||| ||| | ||||| |||||| |||||||||||||||| ||| |||||||||||||||||||||    
T  12638086 aatttcctttcttttatatctagatttctctcttaatttctggagtgcgatacctactcgaattgggtcgtat 12638158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 55322425 - 55322334
Alignment:
Q  23 aatgaaaaata-taatgaatttcctttcgtttgtctctagttttctccct-taatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    ||||||||||| |||||||||||||||| ||| ||||||| || || | | ||| ||||||||||||||||||||||||||||||||||||||    
T  55322425 aatgaaaaataataatgaatttcctttcttttatctctagctt-ctacttctaaattctggagtgtgatccctactcgaattgggtcgtatca 55322334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 10129665 - 10129632
Alignment:
Q  80 ggagtgtgatccctactcgaattgggtcgtatca 113  Q
    ||||||||||||||||||||||||||||||||||    
T  10129665 ggagtgtgatccctactcgaattgggtcgtatca 10129632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 18583977 - 18583886
Alignment:
Q  22 caatgaaaaatataatgaatttcctttcgtttgtctctagttttctcccttaatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    |||||||||||||| ||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||    
T  18583977 caatgaaaaatatactgaatttcctttcttttatctctagttttctctcttaatttctggagtgtaatctctactcgaattgggtcgtatca 18583886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 23405566 - 23405475
Alignment:
Q  22 caatgaaaaatataatgaatttcctttcgtttgtctctagttttctccct-taatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    |||||||||||||||||||||| |||||  || |||||||||| |||||| ||| ||||||||||||||||||||| ||||||||||||||||    
T  23405566 caatgaaaaatataatgaattttctttctcttttctctagttt-ctccctctaaattctggagtgtgatccctacttgaattgggtcgtatca 23405475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 21076032 - 21075941
Alignment:
Q  22 caatgaaaaatataatgaatttcctttcgtttgtctctagttt-tctcccttaatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    |||||||||||||| ||||||||||||| ||| ||| |||||| |||| | ||| ||||||||||| ||||||||||||||| | ||||||||    
T  21076032 caatgaaaaatatagtgaatttcctttcttttatctgtagtttctctcgc-taaattctggagtgtcatccctactcgaatttgatcgtatca 21075941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 16544449 - 16544529
Alignment:
Q  33 ataatgaatttcctttcgtttgtctctagttttctcccttaatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    |||| |||||||||||| ||| ||| ||||||||| | |||||||||| ||||||||| ||| || |||| || |||||||    
T  16544449 ataacgaatttcctttcttttatctttagttttcttctttaatttctgaagtgtgatcgctattcaaattaggccgtatca 16544529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 9893802 - 9893886
Alignment:
Q  22 caatgaaaaatataatgaatttcctttcgtttgtctctagttttctcccttaatttctggagtgtgatccctactcgaattgggt 106  Q
    |||||||||||||||||||||| ||||| ||  ||||||||||  | |  ||| || || |||||||| ||||||| ||||||||    
T  9893802 caatgaaaaatataatgaattttctttctttcatctctagtttctttcactaaattatgcagtgtgatacctactcaaattgggt 9893886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 42513153 - 42513062
Alignment:
Q  22 caatgaaaaatataatgaatttcctttcgtttgtctctagttttctccct-taatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    |||||||||||||||||||||| |||||  || |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42513153 caatgaaaaatataatgaattttctttctcttttctctagttt-ctccctctaatttctggagtgtgatccctactcgaattgggtcgtatca 42513062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 41712368 - 41712442
Alignment:
Q  39 aatttcctttcgtttgtctctagttttctcccttaatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    ||||||||||| |||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||    
T  41712368 aatttcctttcttttgtctctagttttctctcttaatttttggagtgtgatccttactcgaattgggtcgtatca 41712442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 30456366 - 30456469
Alignment:
Q  23 aatgaaaaatataatgaatttcctttcgtttgtctctagttttctccct-taatttctggagtgtgatccctactcgaattgggtcgtatcacttagttt 121  Q
    ||||||||||||||||||||| |||||  || |||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||   |||||    
T  30456366 aatgaaaaatataatgaattttctttctcttttctctagttt-ctccctctaaattctggagtgtgatccctactcgaattgggtcgtatcagaaagttt 30456464  T
Q  122 atgca 126  Q
    |||||    
T  30456465 atgca 30456469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 30452757 - 30452847
Alignment:
Q  23 aatgaaaaatataatgaatttcctttcgtttgtctctagttttctccct-taatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    ||||||||||||||||||||| |||||  || |||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  30452757 aatgaaaaatataatgaattttctttctcttttctctagttt-ctccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 30452847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 6102961 - 6103053
Alignment:
Q  22 caatgaaaaatataatgaatttccttt-cgtttgtctctagttttctcccttaatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    ||||||||||||||||||||||  ||| | ||| |||||||||||||| |||||||| ||||||||||| |||||||||||||||| ||||||    
T  6102961 caatgaaaaatataatgaattttttttgcttttatctctagttttctctcttaatttatggagtgtgattcctactcgaattgggttgtatca 6103053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 11206530 - 11206611
Alignment:
Q  22 caatgaaaaatataatgaatttcctttcgtttgtctctagttttctccct-taatttctggagtgtgatccctactcgaattg 103  Q
    |||||||||||||||||||||| |||||  || ||||||| ||||||||| ||| ||||||||||||||| ||||||||||||    
T  11206530 caatgaaaaatataatgaattttctttctcttttctctag-tttctccctctaaattctggagtgtgatctctactcgaattg 11206611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 49017187 - 49017280
Alignment:
Q  23 aatgaaaaatataatgaatttcctttcgtttgtctctagttttctccct-taatttctggagtgtgatccctactcgaattgggtcgtatcactt 116  Q
    |||||||||||||||  |||| ||||| ||| |||||||||| ||| || |||||| |||||||||||||||| ||||||| |||||||||||||    
T  49017187 aatgaaaaatataatatattttctttcttttatctctagttt-ctctctctaatttatggagtgtgatccctattcgaattaggtcgtatcactt 49017280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 4257408 - 4257365
Alignment:
Q  70 cttaatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    ||||||||||||||||||||||||||||  ||||||||||||||    
T  4257408 cttaatttctggagtgtgatccctactcatattgggtcgtatca 4257365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 36326549 - 36326641
Alignment:
Q  22 caatgaaaaatataatgaatttcctttcgtttgtctctagttttctccct-taatttctggagtgtgatccctactcgaattgggtcgtatcac 114  Q
    |||||||||||||||||||||| |||||  || |||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  36326549 caatgaaaaatataatgaattttctttctcttttctctagttt-ctccctctaaattctggagtgtgatccctactcgaattgggtcgtatcac 36326641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 14029386 - 14029477
Alignment:
Q  22 caatgaaaaatataatgaatttcctttcgtttgtctctagttttctccct-taatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    |||||||||||||||||||||||||||| ||| ||||||| |||||| || ||| |||||||||||||||||||||||||||||| |||||||    
T  14029386 caatgaaaaatataatgaatttcctttcttttatctctag-tttctcactctaaattctggagtgtgatccctactcgaattgggccgtatca 14029477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 113
Target Start/End: Complemental strand, 19798092 - 19798051
Alignment:
Q  72 taatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  19798092 taatttctggagtgtgatccctactcgaatcgggtcgtatca 19798051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 113
Target Start/End: Complemental strand, 19798337 - 19798296
Alignment:
Q  72 taatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  19798337 taatttctggagtctgatccctactcgaattgggtcgtatca 19798296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 1830902 - 1830939
Alignment:
Q  76 ttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  1830902 ttctggagtgtgatccctacttgaattgggtcgtatca 1830939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 18319509 - 18319550
Alignment:
Q  72 taatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    |||||||| ||||||||||||||||||||| |||||||||||    
T  18319509 taatttctagagtgtgatccctactcgaatcgggtcgtatca 18319550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 113
Target Start/End: Complemental strand, 30911644 - 30911613
Alignment:
Q  82 agtgtgatccctactcgaattgggtcgtatca 113  Q
    ||||||||||||||||||||||||||||||||    
T  30911644 agtgtgatccctactcgaattgggtcgtatca 30911613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 30912148 - 30912185
Alignment:
Q  76 ttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    |||||||||||||||| ||||||||||| |||||||||    
T  30912148 ttctggagtgtgatccgtactcgaattgagtcgtatca 30912185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 158 - 283
Target Start/End: Complemental strand, 3124165 - 3124042
Alignment:
Q  158 ttgtttcttttgtatattatttcaataatgtcattgaatgtatgaagttagacatgcc-ttttttggttcagtaagttacggatactttcaagtttaaca 256  Q
    |||||||||||||| |||||||||||   || ||| |||||| ||||||| |||| || |||||||| ||||||| |||   ||||||||||||||||||    
T  3124165 ttgtttcttttgtacattatttcaat---gtaatttaatgtacgaagttaaacataccattttttgggtcagtaacttaaacatactttcaagtttaaca 3124069  T
Q  257 tattttctaaactggtatgctgttatt 283  Q
    ||||||||| |||||||||||||||||    
T  3124068 tattttctagactggtatgctgttatt 3124042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 44762026 - 44762117
Alignment:
Q  22 caatgaaaaatataatgaatttcctttcgtttgtctctagttttctccct-taatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    ||||||||||||||||||||||  ||||  || ||| |||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  44762026 caatgaaaaatataatgaattttttttctcttttctatagttt-ctccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 44762117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 44765333 - 44765424
Alignment:
Q  22 caatgaaaaatataatgaatttcctttcgtttgtctctagttttctccct-taatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    |||||||||||||||||||||| |||||  || ||| |||||| |||||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  44765333 caatgaaaaatataatgaattttctttctcttttctatagttt-ctccctctaaattctggagtgtaatccctactcgaattgggtcgtatca 44765424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 11825070 - 11825148
Alignment:
Q  33 ataatgaatttcctttcgtttgtctctagttttctcccttaatttctggagtgtgatccctactcgaattgggtcgtat 111  Q
    ||||| ||||||||||| ||| ||| || ||||||| |||||||| |||||||||||||||| |||||||| |||||||    
T  11825070 ataatcaatttcctttcttttatctttaattttctctcttaatttatggagtgtgatccctattcgaattgagtcgtat 11825148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 337
Target Start/End: Complemental strand, 3126968 - 3126902
Alignment:
Q  267 actggtatgctgttattataacaaaaacagaatttgatataacataccaatgcagtttgatttgcataatt 337  Q
    ||||||||||||||||||     ||||||||||| |  |||| | ||||||||||||||||||||||||||    
T  3126968 actggtatgctgttatta----gaaaacagaattagccataatacaccaatgcagtttgatttgcataatt 3126902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 32519656 - 32519623
Alignment:
Q  80 ggagtgtgatccctactcgaattgggtcgtatca 113  Q
    |||||||||||||||||||||||||||| |||||    
T  32519656 ggagtgtgatccctactcgaattgggtcctatca 32519623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 4834778 - 4834869
Alignment:
Q  22 caatgaaaaatataatgaatttcctttcgtttgtctctagttttctccct-taatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    |||||||||||||||||||||| |||||  || |||||||||| |||||| ||| |||||||||||||||||||||| |||||||||||||||    
T  4834778 caatgaaaaatataatgaattttctttctcttttctctagttt-ctccctctaaattctggagtgtgatccctactcaaattgggtcgtatca 4834869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 7422706 - 7422797
Alignment:
Q  22 caatgaaaaatataatgaatttcctttcgtttgtctctagttttctccct-taatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    |||||||||||||||||||||| |||||  || |||||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||    
T  7422706 caatgaaaaatataatgaattttctttctcttttctctagttt-ctctctctaatttcttgagtgtgatccctactcgaattgggtcgtatca 7422797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 13886600 - 13886691
Alignment:
Q  22 caatgaaaaatataatgaatttcctttcgtttgtctctagttttctccct-taatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    |||||||||||||||||||||| |||||  || |||||||||| |||||| ||| |||||||||||||||||||||| |||||||||||||||    
T  13886600 caatgaaaaatataatgaattttctttctcttttctctagttt-ctccctctaaattctggagtgtgatccctactcaaattgggtcgtatca 13886691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 33242907 - 33242998
Alignment:
Q  22 caatgaaaaatataatgaatttcctttcgtttgtctctagttttctccct-taatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    ||||||||||||||||||||||| |||| ||| | |||||||| ||| || ||||||||||||||||||| ||||||||||||||||||||||    
T  33242907 caatgaaaaatataatgaatttcttttcttttatttctagttt-ctctctctaatttctggagtgtgatctctactcgaattgggtcgtatca 33242998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 7426645 - 7426736
Alignment:
Q  22 caatgaaaaatataatgaatttcctttcgtttgtctctagttttctccct-taatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    |||||||||||||||||||||| |||||  || |||||| ||| |||  | ||||||||||||||||||||||||||||||||||||||||||    
T  7426645 caatgaaaaatataatgaattttctttctcttttctctaattt-ctctttctaatttctggagtgtgatccctactcgaattgggtcgtatca 7426736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 7415698 - 7415789
Alignment:
Q  22 caatgaaaaatataatgaatttcctttcgtttgtctctagttttctccct-taatttctggagtgtgatccctactcgaattgggtcgtatca 113  Q
    |||||||||||||||||||||| |||||  || |||||||||| ||| || |||||||||||||||||||||||||| | |||| ||||||||    
T  7415698 caatgaaaaatataatgaattttctttctcttttctctagttt-ctctctctaatttctggagtgtgatccctactcaagttggatcgtatca 7415789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 16389250 - 16389216
Alignment:
Q  80 ggagtgtgatccctactcgaattgggtcgtatcac 114  Q
    |||||||||||||||||||||||||||||||||||    
T  16389250 ggagtgtgatccctactcgaattgggtcgtatcac 16389216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University