View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12082_low_11 (Length: 361)

Name: NF12082_low_11
Description: NF12082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12082_low_11
NF12082_low_11
[»] chr5 (3 HSPs)
chr5 (1-348)||(13109428-13109778)
chr5 (1-344)||(13039434-13039780)
chr5 (251-332)||(13417066-13417146)
[»] chr2 (4 HSPs)
chr2 (225-332)||(24447923-24448033)
chr2 (287-341)||(7670385-7670439)
chr2 (303-340)||(1529732-1529769)
chr2 (230-337)||(16567767-16567877)
[»] chr8 (5 HSPs)
chr8 (225-341)||(22573078-22573197)
chr8 (225-332)||(40028765-40028875)
chr8 (300-348)||(556800-556848)
chr8 (304-338)||(32889976-32890010)
chr8 (288-340)||(11066492-11066544)
[»] chr4 (3 HSPs)
chr4 (225-340)||(22202869-22202987)
chr4 (300-341)||(34666430-34666471)
chr4 (302-340)||(26183677-26183715)
[»] chr7 (1 HSPs)
chr7 (226-338)||(10026381-10026496)
[»] chr1 (1 HSPs)
chr1 (225-341)||(45792731-45792849)
[»] chr6 (3 HSPs)
chr6 (264-348)||(8573834-8573918)
chr6 (264-348)||(8547481-8547565)
chr6 (305-337)||(2565887-2565919)


Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 13109428 - 13109778
Alignment:
Q  1 tctaaaatctagttcatctcatttgtggttctctaccttgattgaaatagataacatcttttccttcttttatcctatataaagagtatatttcacttga 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||| | |||||||| |||| |||||||||||||||||||||||    
T  13109428 tctaaaatctagttcatctcatttgtggttccctaccttgattgagataaataacatcttcttcttcttttctcctgtataaagagtatatttcacttga 13109527  T
Q  101 agataaaccactacaatgatttctcaaactctcatttgaagttaaaccactccaaaaatttctacatctcgaaaatcagattaaaaattatgatgaaact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||    
T  13109528 agataaaccactacaatgatttctcaaactctcatttgaagttaaaccactccaaaaatttctacatgtcgaaaagcagactaaaaattatgatgaaact 13109627  T
Q  201 tccgtgttgactttctttaaaagtccgtttggtgtgcaggataaagagac---atatgattagaatattctatcctgtctcaatccactgtttggtgcgt 297  Q
    |||||||||| |||||||||||| |||||||||| |||||||||||||||   |||||||||| |||| ||||||||||| |||||| |||||||||||     
T  13109628 tccgtgttgattttctttaaaagcccgtttggtgcgcaggataaagagacaaaatatgattagtatatcctatcctgtcttaatccattgtttggtgcgc 13109727  T
Q  298 ccataggaaatgataagtttaacctatttctaatcatatcctatccaccct 348  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  13109728 ccatagaaaatgataagtttaacatatttctaatcatatcctatccaccct 13109778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 13039434 - 13039780
Alignment:
Q  1 tctaaaatctagttcatctcatttgtggttctctaccttgattgaaatagataacatcttttccttcttttatcctatataaagagtatatttcacttga 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||| | |||||||| |||| |||||||||||||||||||||||    
T  13039434 tctaaaatctagttcatctcatttgtggttccctaccttgattgagataaataacatcttcttcttcttttctcctgtataaagagtatatttcacttga 13039533  T
Q  101 agataaaccactacaatgatttctcaaactctcatttgaagttaaaccactccaaaaatttctacatctcgaaaatcagattaaaaattatgatgaaact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||    
T  13039534 agataaaccactacaatgatttctcaaactctcatttgaagttaaaccactccaaaaatttctacatgtcgaaaagcagactaaaaattatgatgaaact 13039633  T
Q  201 tccgtgttgactttctttaaaagtccgtttggtgtgcaggataaagagac---atatgattagaatattctatcctgtctcaatccactgtttggtgcgt 297  Q
    |||||||||| |||||||||||| |||||||||| |||||||||||||||   |||||||||| |||| ||||||||||| |||||| |||||||||||     
T  13039634 tccgtgttgattttctttaaaagcccgtttggtgcgcaggataaagagacaaaatatgattagtatatcctatcctgtcttaatccattgtttggtgcgc 13039733  T
Q  298 ccataggaaatgataagtttaacctatttctaatcatatcctatcca 344  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||    
T  13039734 ccataggaaatgataagtttaacatatttctaattatatcctatcca 13039780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 13417146 - 13417066
Alignment:
Q  251 atatgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacctatttctaatc 332  Q
    ||||||||| | |||| ||||||| |||||||| | |||||||||  | | || ||| ||||||||||||||||||||||||    
T  13417146 atatgattaaattattatatcctgactcaatccgc-gtttggtgcaccaacagaaaaagataagtttaacctatttctaatc 13417066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 225 - 332
Target Start/End: Original strand, 24447923 - 24448033
Alignment:
Q  225 ccgtttggtgtgcaggataaagagacat---atgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacc 321  Q
    |||||||||| ||||||||| |||||||   ||||||| |||||| ||||||||||||||||  ||||||||| | |||||||||||||||||||||| |    
T  24447923 ccgtttggtgcgcaggataaggagacatgatatgattaaaatattttatcctgtctcaatccgttgtttggtgtgcccataggaaatgataagtttaatc 24448022  T
Q  322 tatttctaatc 332  Q
    ||||| |||||    
T  24448023 tatttgtaatc 24448033  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 7670385 - 7670439
Alignment:
Q  287 gtttggtgcgtccataggaaatgataagtttaacctatttctaatcatatcctat 341  Q
    |||||||||  | |||| |||||||||||||||||| ||||||||| ||||||||    
T  7670385 gtttggtgcaccaatagaaaatgataagtttaacctgtttctaatcctatcctat 7670439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 340
Target Start/End: Complemental strand, 1529769 - 1529732
Alignment:
Q  303 ggaaatgataagtttaacctatttctaatcatatccta 340  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  1529769 ggaaatgataagtttaacttatttttaatcatatccta 1529732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 337
Target Start/End: Complemental strand, 16567877 - 16567767
Alignment:
Q  230 tggtgtgcaggataaagagacat---atgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacctattt 326  Q
    ||||| ||||||||| |||||||   |||||| || |||  |||| ||||| |||||  ||||||||||  | | || ||| ||||||||||||||||||    
T  16567877 tggtgcgcaggataaggagacatgatatgatttgattatcatatcatgtcttaatccgttgtttggtgcaccaacagaaaaggataagtttaacctattt 16567778  T
Q  327 ctaatcatatc 337  Q
    |||||| ||||    
T  16567777 ctaatcctatc 16567767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 225 - 341
Target Start/End: Original strand, 22573078 - 22573197
Alignment:
Q  225 ccgtttggtgtgcaggataaagagacat---atgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacc 321  Q
    |||||||||| ||| ||||| |||||||   ||||||||||||| |||||||| ||||||||  ||||||||||  | | ||||||||||||||||||||    
T  22573078 ccgtttggtgcgcatgataaggagacatgatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacc 22573177  T
Q  322 tatttctaatcatatcctat 341  Q
    | ||||||||| ||||||||    
T  22573178 tgtttctaatcctatcctat 22573197  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 332
Target Start/End: Original strand, 40028765 - 40028875
Alignment:
Q  225 ccgtttggtgtgcaggataaagagaca---tatgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacc 321  Q
    |||||||||| ||||||||| ||||||   |||||||| |||||  ||||||| |||||||   ||||||||||| | | |||||||||||| |||||||    
T  40028765 ccgtttggtgcgcaggataaggagacaggatatgattaaaatatcatatcctgcctcaatctgttgtttggtgcgccaacaggaaatgataactttaacc 40028864  T
Q  322 tatttctaatc 332  Q
    | |||||||||    
T  40028865 tttttctaatc 40028875  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 556800 - 556848
Alignment:
Q  300 ataggaaatgataagtttaacctatttctaatcatatcctatccaccct 348  Q
    |||| ||||||||| || |||||||||||||||||||||||| ||||||    
T  556800 atagaaaatgataaattaaacctatttctaatcatatcctattcaccct 556848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 338
Target Start/End: Original strand, 32889976 - 32890010
Alignment:
Q  304 gaaatgataagtttaacctatttctaatcatatcc 338  Q
    ||||||||||||||||||||||||||||| |||||    
T  32889976 gaaatgataagtttaacctatttctaatcctatcc 32890010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 11066492 - 11066544
Alignment:
Q  288 tttggtgcgtccataggaaatgataagtttaacctatttctaatcatatccta 340  Q
    ||||||| ||| |||||||| ||||| || ||||||||||||||| |||||||    
T  11066492 tttggtgtgtcaataggaaaggataacttaaacctatttctaatcctatccta 11066544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 225 - 340
Target Start/End: Original strand, 22202869 - 22202987
Alignment:
Q  225 ccgtttggtgtgcaggataaagagaca---tatgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacc 321  Q
    |||||||||| ||||||||| ||||||   |||||| ||||||| ||||| |||| ||||||  |||||| |||| ||||| ||||||||||||||||||    
T  22202869 ccgtttggtgcgcaggataaggagacaggatatgatcagaatatcctatcgtgtcccaatccgttgtttgttgcgaccatatgaaatgataagtttaacc 22202968  T
Q  322 tatttctaatcatatccta 340  Q
    ||||| ||||| |||||||    
T  22202969 tatttttaatcctatccta 22202987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 34666430 - 34666471
Alignment:
Q  300 ataggaaatgataagtttaacctatttctaatcatatcctat 341  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  34666430 ataggaaatgataacttaaacctatttctaatcatatcctat 34666471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 340
Target Start/End: Original strand, 26183677 - 26183715
Alignment:
Q  302 aggaaatgataagtttaacctatttctaatcatatccta 340  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  26183677 aggaaatgataagtttaacatatttctaatcctatccta 26183715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 226 - 338
Target Start/End: Original strand, 10026381 - 10026496
Alignment:
Q  226 cgtttggtgtgcaggataaagagaca---tatgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacct 322  Q
    ||||||||| ||||||||| ||||||   |||||||||| |||  |||| ||||| |||||  ||||||||||  | | | |||||||||||||||||||    
T  10026381 cgtttggtgcgcaggataaggagacaggatatgattagattatcatatcttgtcttaatcccttgtttggtgcaccaacatgaaatgataagtttaacct 10026480  T
Q  323 atttctaatcatatcc 338  Q
    ||||||||||||||||    
T  10026481 atttctaatcatatcc 10026496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 341
Target Start/End: Complemental strand, 45792849 - 45792731
Alignment:
Q  225 ccgtttggtgtgcaggataaagagacat---atgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacc 321  Q
    |||||||||||||||||||| |||||||   ||||||||||||| |||||||| ||||||||  | ||||||||  | | || ||||||||||||||||     
T  45792849 ccgtttggtgtgcaggataaggagacatgatatgattagaatatcctatcctgactcaatccgtt-tttggtgcaccaacagaaaatgataagtttaaca 45792751  T
Q  322 tatttctaatcatatcctat 341  Q
    | ||||||||| ||||||||    
T  45792750 tgtttctaatcctatcctat 45792731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 264 - 348
Target Start/End: Complemental strand, 8573918 - 8573834
Alignment:
Q  264 attctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacctatttctaatcatatcctatccaccct 348  Q
    |||||||||||| ||||||| | |||||| || || |||||||||||||| || ||||||||||||||| |||| ||| ||||||    
T  8573918 attctatcctgtttcaatcctccgtttggagcatcaataggaaatgataacttaaacctatttctaatcttatcatattcaccct 8573834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 348
Target Start/End: Complemental strand, 8547565 - 8547481
Alignment:
Q  264 attctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacctatttctaatcatatcctatccaccct 348  Q
    |||||||| ||| ||||||| | |||||| || || |||||||| ||||| || ||||||||||||||| |||| ||| ||||||    
T  8547565 attctatcatgtttcaatccgccgtttggagcatcaataggaaaggataacttaaacctatttctaatcttatcatattcaccct 8547481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 2565919 - 2565887
Alignment:
Q  305 aaatgataagtttaacctatttctaatcatatc 337  Q
    |||||||||||||||| ||||||||||||||||    
T  2565919 aaatgataagtttaacatatttctaatcatatc 2565887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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