View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12082_low_12 (Length: 328)
Name: NF12082_low_12
Description: NF12082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12082_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 31409868 - 31410185
Alignment:
| Q |
1 |
ccgtagtaaaaacggatattaagaggaaccacaatatatataattatcaactttgatcccacttgaaatcaacgataattggagatcataatagtgatct |
100 |
Q |
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|||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31409868 |
ccgtagtaaaaatggataataagaggaaccacaatatatttaattatcaactttgatcccacttgaaatcaatgataattggagatcataatagtgatct |
31409967 |
T |
|
| Q |
101 |
gtcacttttcctgccaaatccacaactataactcccccattaatccctagttttggtcttctaaaatgctttgtaaccattgctgcagtttttcgacgga |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
31409968 |
gtcacttttcctgccaaatccacaactataacccccccattaatccctagttttggtcttctaaaatgctttgtaaccattgctacagtttttcgaagga |
31410067 |
T |
|
| Q |
201 |
aaggatatctaagtaataattcccattgagaagttattgactgtcattaaaacataaaacatttgttagaaatcagcttcattttgtatataagggattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31410068 |
aaggatatctaagtaataattcccattgagaagttattgactgtcattaaaacataaaacatttgttagaaatcagcttcattttgtatataagggattt |
31410167 |
T |
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| Q |
301 |
attttgattttacctatg |
318 |
Q |
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|||||||||||| ||||| |
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| T |
31410168 |
attttgattttagctatg |
31410185 |
T |
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