View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12082_low_3 (Length: 596)
Name: NF12082_low_3
Description: NF12082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12082_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 13 - 577
Target Start/End: Original strand, 45565594 - 45566158
Alignment:
| Q |
13 |
ggacatcaatttgaacatagaactcctctctcttgaagtctcataagagtaggaagaatacctccaagcacacttcaaagaaaaactttgatctgttaga |
112 |
Q |
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| T |
45565594 |
ggacatccatttgaacatggaactcctctcttttgaagtctcataagagtaggaagaatacctccaagcacacttcaaagaaaaactttgatctgttaca |
45565693 |
T |
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| Q |
113 |
gaattcgcaaaccccacattctcatccattcgcccaacatcatctctttgcacgcagaattcataaaataggagctagcaaccacgtaaagttcatgttg |
212 |
Q |
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| T |
45565694 |
gaattcgcaaaccccacattctcatccattcaccgaacatcatctctttgcacgcagaattcataaaataggagctagcaaccacgtaaagttcatgttg |
45565793 |
T |
|
| Q |
213 |
cgccacaaccaaagtcctatcatctttcttcaagtttgtaaaagtattgcatcatctctttgcactcgccatggcttgaaagaatcgcgcattggtgtca |
312 |
Q |
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| T |
45565794 |
cgccacaaccaaagtcctatcatctttcttcaagtttgtaaaagtattgcatcatctctttgcactcgccatggcttgaaagaatcgcgcattggtatca |
45565893 |
T |
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| Q |
313 |
ccatccttaagccaaatcacctttgctatttgtttccaaaatgcttctgcttgtgccaataatcctcccattcaaatatgtacctccttagagcgcccaa |
412 |
Q |
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| T |
45565894 |
ccatccttaagccaaatcacctttgctatttgtttccaaaatgcttctgcttgtgccaataatcctctcattcaaatatgtacctccttagagcgcgcaa |
45565993 |
T |
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| Q |
413 |
tttgggaagcttgcacgctgcccctaaatctatctaactcatcccgacattcatcaatggaaacttgatacttactttggagctttcttcccggttcgtt |
512 |
Q |
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| T |
45565994 |
tttgggaagcttgcacgctgcccctaaatctctctaactcatcccgacattcatcaatggaaactcgatacttactttggagctttcttccccgttcgtt |
45566093 |
T |
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| Q |
513 |
catatcctctgtacaattcttcagcctgagcaaaatccctccatcctgacttttctcctaccccc |
577 |
Q |
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| T |
45566094 |
catatcctctgtacaattcttcagcctgagcaaaatccctccatcctgacttttctcctaccccc |
45566158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 310 - 371
Target Start/End: Original strand, 8179388 - 8179449
Alignment:
| Q |
310 |
tcaccatccttaagccaaatcacctttgctatttgtttccaaaatgcttctgcttgtgccaa |
371 |
Q |
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||||||||||| |||||||||||||| ||| |||| |||||||| |||||| |||||||||| |
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| T |
8179388 |
tcaccatccttcagccaaatcaccttagctctttgcttccaaaacgcttcttcttgtgccaa |
8179449 |
T |
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