View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12082_low_6 (Length: 394)
Name: NF12082_low_6
Description: NF12082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12082_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 13039441 - 13039059
Alignment:
| Q |
1 |
attttagagttggaaatacaattcatgtgttttcgaataaaaacattattgtgaatgtccatggcatgtcatcaaccaaaaaactttcggagaaacttga |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
13039441 |
attttagagttggaaatacaattcacgtgttttgggataaaaacattattgtgaatgtccatggcatgtaatcaaccaaaaaactttaagagaaacttga |
13039342 |
T |
|
| Q |
101 |
aaggcaagtatctcatattggtcattgttgaagaagcagtttcgtaacttacgcgtggaatgattctgatacnnnnnnnnnnccaccttgtgtaacccta |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13039341 |
aaggcaaatatctcatattggtcattgttgaagaagcagtttcgtaacttacgcgtggaatgattctgatatttttttttttccaccttgtgtaacccta |
13039242 |
T |
|
| Q |
201 |
attatataaacaaacatatcattcattcattcaaatttatgtatgtgaaactttactacacttaattcattcattcatt---cattgcagttgtatgaaa |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || | | | |||||||||||||||||| |
|
|
| T |
13039241 |
attatataaacaaacatatcattcattcattcaaatttatgtatgtgaaactttactacacttgaattttttttaaacttgacattgcagttgtatgaaa |
13039142 |
T |
|
| Q |
298 |
tactgtaaattgtgcacaagatcgctattgtaaattgttaaggttaatactttttgatcaaattttagtaaggttattgatgat |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13039141 |
tactgtaaattgtgcacaagatcgctattgtaaattg-taaggttaatactttttgatcaaattttagtaaggttattaatgat |
13039059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 13109435 - 13109054
Alignment:
| Q |
1 |
attttagagttggaaatacaattcatgtgttttcgaataaaaacattattgtgaatgtccatggcatgtcatcaaccaaaaaactttcggagaaacttga |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
13109435 |
attttagagttggaaatacaattcacgtgttttgggataaaaacattattgtgaatgtccatggcatgtaatcaaccaaaaaactttaagagaaacttga |
13109336 |
T |
|
| Q |
101 |
aaggcaagtatctcatattggtcattgttgaagaagcagtttcgtaacttacgcgtggaatgattctgatacnnnnnnnnnnccaccttgtgtaacccta |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13109335 |
aaggcaaatatctcatattggtcattgttgaagaagcagtttcgtaacttacgcgtggaatgattctgata-ttttttttttccaccttgtgtaacccta |
13109237 |
T |
|
| Q |
201 |
attatataaacaaacatatcattcattcattcaaatttatgtatgtgaaactttactacacttaattcattcattcatt---cattgcagttgtatgaaa |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || | | | |||||||||||||||||| |
|
|
| T |
13109236 |
attatataaacaaacatatcattcattcattcaaatttatgtatgtgaaactttactacacttgaattttttttaaacttgacattgcagttgtatgaaa |
13109137 |
T |
|
| Q |
298 |
tactgtaaattgtgcacaagatcgctattgtaaattgttaaggttaatactttttgatcaaattttagtaaggttattgatgat |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13109136 |
tactgtaaattgtgcacaagatcgctattgtaaattg-taaggttaatactttttgatcaaattttagtaaggttattaatgat |
13109054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University