View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12082_low_9 (Length: 368)
Name: NF12082_low_9
Description: NF12082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12082_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 205 - 353
Target Start/End: Original strand, 39941260 - 39941408
Alignment:
| Q |
205 |
gagttggaagaagatgaggttgatccagatgaattatcctatgaagagttgattgaattaggaaacttcataggagaagagaagaggggattaccagcta |
304 |
Q |
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| T |
39941260 |
gagttggaagaagatgaggttgatccagatgaattatcctatgaagagttgattgaattaggaaacttcataggagaagagaagaggggattaccagcta |
39941359 |
T |
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| Q |
305 |
atgaaatctcttcttgcttacacccttatacttccaaaattgctgaaag |
353 |
Q |
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| T |
39941360 |
atgaaatctcttcttgcttacacccttatacttccaaaattgctgaaag |
39941408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 39941073 - 39941202
Alignment:
| Q |
18 |
aacagtcacaaacctagcaaccattgaaagtgaaagtgacgaagatataagtgactcctcttttagtaatgatgatattggtgatgctgatttttcattt |
117 |
Q |
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| T |
39941073 |
aacattcacaaacctagcaaccattgaaagtgaaagtgacgaagatataagtgactcctcttttagtaatgatgatattggtgatgctgatttttcattt |
39941172 |
T |
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| Q |
118 |
agtcaggagttcgaaaccgatcttcagttt |
147 |
Q |
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| T |
39941173 |
agtcaggagttcgaaaccgatcttcagttt |
39941202 |
T |
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