View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12083_low_3 (Length: 246)

Name: NF12083_low_3
Description: NF12083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12083_low_3
NF12083_low_3
[»] chr6 (5 HSPs)
chr6 (19-238)||(21535611-21535830)
chr6 (19-246)||(18131873-18132100)
chr6 (19-238)||(18133079-18133298)
chr6 (57-200)||(7033443-7033586)
chr6 (19-129)||(21395682-21395792)
[»] chr2 (4 HSPs)
chr2 (23-238)||(33789782-33789997)
chr2 (19-230)||(12324744-12324975)
chr2 (23-130)||(18955376-18955485)
chr2 (181-230)||(39814383-39814432)
[»] chr1 (10 HSPs)
chr1 (19-246)||(10583801-10584028)
chr1 (19-241)||(8089810-8090032)
chr1 (19-238)||(10582603-10582822)
chr1 (19-238)||(49121842-49122061)
chr1 (33-246)||(49123157-49123370)
chr1 (19-146)||(49122123-49122250)
chr1 (19-230)||(8788624-8788855)
chr1 (24-242)||(23541068-23541289)
chr1 (181-230)||(5721703-5721752)
chr1 (181-230)||(11359619-11359668)
[»] chr7 (4 HSPs)
chr7 (19-246)||(6082303-6082530)
chr7 (19-238)||(6081104-6081323)
chr7 (181-246)||(17166131-17166196)
chr7 (193-236)||(27021151-27021194)
[»] chr5 (11 HSPs)
chr5 (19-238)||(22950166-22950385)
chr5 (19-246)||(29526129-29526362)
chr5 (19-238)||(29527343-29527560)
chr5 (19-211)||(19934486-19934678)
chr5 (19-238)||(39701679-39701896)
chr5 (19-238)||(39702909-39703126)
chr5 (19-148)||(41051019-41051152)
chr5 (179-238)||(41051194-41051253)
chr5 (181-230)||(41108828-41108877)
chr5 (181-230)||(18690887-18690936)
chr5 (75-130)||(33215264-33215321)
[»] scaffold0018 (3 HSPs)
scaffold0018 (19-238)||(177954-178173)
scaffold0018 (171-239)||(177775-177843)
scaffold0018 (174-236)||(177831-177893)
[»] chr3 (12 HSPs)
chr3 (19-238)||(54994512-54994731)
chr3 (19-238)||(7197615-7197838)
chr3 (19-210)||(2386391-2386582)
chr3 (19-239)||(45826243-45826454)
chr3 (19-230)||(592392-592623)
chr3 (19-239)||(48637629-48637869)
chr3 (47-240)||(40976663-40976876)
chr3 (23-91)||(51274436-51274504)
chr3 (181-246)||(35389144-35389209)
chr3 (192-239)||(51273604-51273651)
chr3 (181-230)||(25184588-25184637)
chr3 (75-130)||(25184672-25184729)
[»] scaffold0011 (2 HSPs)
scaffold0011 (19-238)||(205680-205899)
scaffold0011 (19-105)||(211757-211843)
[»] scaffold0227 (2 HSPs)
scaffold0227 (24-246)||(12120-12341)
scaffold0227 (20-238)||(10972-11197)
[»] chr4 (4 HSPs)
chr4 (20-238)||(11961933-11962151)
chr4 (19-226)||(45638752-45638984)
chr4 (19-99)||(3567008-3567088)
chr4 (75-130)||(25542486-25542543)
[»] scaffold0026 (2 HSPs)
scaffold0026 (19-246)||(80592-80839)
scaffold0026 (19-239)||(79403-79643)
[»] chr8 (4 HSPs)
chr8 (23-233)||(40254294-40254522)
chr8 (181-230)||(36241366-36241415)
chr8 (25-131)||(2411156-2411264)
chr8 (75-130)||(36241268-36241325)


Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 21535830 - 21535611
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  21535830 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagctgt 21535731  T
Q  119 tacatagaagtttagtaaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactattattctataactgctgccct 218  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21535730 tacatagaagtttagtagacagcaattactacatacaagtaacagttacttatttataatattattaaataaactactattattctataactgctgccct 21535631  T
Q  219 taggagtcctattactaaca 238  Q
    ||||||||||||||||||||    
T  21535630 taggagtcctattactaaca 21535611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 18131873 - 18132100
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgt 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  18131873 attcgagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctgt 18131972  T
Q  119 tacatagaagtttagtaaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactattattctataactgctgccct 218  Q
    ||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18131973 tacatagaagtttagtagacagcaattactacacacaagtaacagttacttatttataatattattaaataaactactattattctataactgctgccct 18132072  T
Q  219 taggagtcctattactaacaatactccc 246  Q
    ||||||||||||||||||||||||||||    
T  18132073 taggagtcctattactaacaatactccc 18132100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 18133079 - 18133298
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  18133079 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctgt 18133178  T
Q  119 tacatagaagtttagtaaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactattattctataactgctgccct 218  Q
    ||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18133179 tacatagaagtttagtagacagcaattactacacacaagtaacagttacttatttataatattattaaataaactactattattctataactgctgccct 18133278  T
Q  219 taggagtcctattactaaca 238  Q
    ||||||||||||||||||||    
T  18133279 taggagtcctattactaaca 18133298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 57 - 200
Target Start/End: Original strand, 7033443 - 7033586
Alignment:
Q  57 caatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaagtttagtaaacagcaattactacatacaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||| ||||||||||| ||||    
T  7033443 caatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctgttacatagaagtttagtagacaacaattactacacacaa 7033542  T
Q  157 gtaacggttacttatttataatattattaaataaactactatta 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  7033543 gtaacagttacttatttataatattattaaataaactactatta 7033586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 21395682 - 21395792
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgt 118  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| | |||    
T  21395682 attcgagagcttggtctctccctaccaatcctttatcccaatccctgaatgcctttcttttcctctgcatcttatttataatactaaatcctatggctgt 21395781  T
Q  119 tacatagaagt 129  Q
    |||||||||||    
T  21395782 tacatagaagt 21395792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 23 - 238
Target Start/End: Complemental strand, 33789997 - 33789782
Alignment:
Q  23 gagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttaca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  33789997 gagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctgttaca 33789898  T
Q  123 tagaagtttagtaaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactattattctataactgctgcccttagg 222  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33789897 tagaagtttagtagacagcaattactacacacaagtaacagttacttatttataatattattaaataaactactattattctataactgctgcccttagg 33789798  T
Q  223 agtcctattactaaca 238  Q
    ||||||||||||||||    
T  33789797 agtcctattactaaca 33789782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 12324975 - 12324744
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa----ttcctatag 114  Q
    ||||||||| |||||||||||||||| |||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||     ||||||||    
T  12324975 attcgagagtttggtctctccctaccaatcctttatcgcaatccctgaatagctttcttttcctttgcatcttatttataatactaactctctcctatag 12324876  T
Q  115 ttgttacatagaagtttagt----------------aaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactat 198  Q
    | |||||| | |||||||||                | ||| |||||||| || | |||||||  ||||| |||||||||| |||||||||||| ||||     
T  12324875 tagttacacataagtttagtagacaaccactactgcagacaacaattactgcacataagtaacaattactaatttataatactattaaataaacaactag 12324776  T
Q  199 tattctataactgctgcccttaggagtcctat 230  Q
    |||| ||||||| |||||||||||||||||||    
T  12324775 tattatataacttctgcccttaggagtcctat 12324744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 18955485 - 18955376
Alignment:
Q  23 gagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatc-ttatttataatactaa-ttcctatagttgtta 120  Q
    ||||| |||||||||||||||| ||||||||||| |||  | |||| |  ||||||||||||||||| |||||||||| ||||| | |||||||  ||||    
T  18955485 gagagattggtctctccctaccaatcctttatccaaataaccgaattctcttcttttcctctgcatctttatttataacactaactccctatagcagtta 18955386  T
Q  121 catagaagtt 130  Q
    |||| |||||    
T  18955385 cataaaagtt 18955376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 39814432 - 39814383
Alignment:
Q  181 tattaaataaactactattattctataactgctgcccttaggagtcctat 230  Q
    |||||||||||| |||| |||| |||||||  ||||||||||||||||||    
T  39814432 tattaaataaacaactaatattttataacttatgcccttaggagtcctat 39814383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 10584028 - 10583801
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgt 118  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||| |||    
T  10584028 attcgagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttataatactaagtcccatagctgt 10583929  T
Q  119 tacatagaagtttagtaaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactattattctataactgctgccct 218  Q
    ||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10583928 tacatagaagtttagtagacagcaattactacacacaagtaacagttacttatttataatattattaaataaactactattattctataactgctgccct 10583829  T
Q  219 taggagtcctattactaacaatactccc 246  Q
    ||||||||||||||||||||||||||||    
T  10583828 taggagtcctattactaacaatactccc 10583801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 8089810 - 8090032
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgt 118  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||    
T  8089810 attcgagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttataatactaagtcctatagctgt 8089909  T
Q  119 tacatagaagtttagtaaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactattattctataactgctgccct 218  Q
    ||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8089910 tacatagaagtttagtagacagcaattactacacacaagtaacagttacttatttataatattattaaataaactactattattctataactgctgccct 8090009  T
Q  219 taggagtcctattactaacaata 241  Q
    |||||||||||||||||||||||    
T  8090010 taggagtcctattactaacaata 8090032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 10582822 - 10582603
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgt 118  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||    
T  10582822 attcgagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttataatactaagtcctatagctgt 10582723  T
Q  119 tacatagaagtttagtaaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactattattctataactgctgccct 218  Q
    ||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10582722 tacatagaagtttagtagacagcaattactacacacaagtaacagttacttatttataatattattaaataaactactattattctataactgctgccct 10582623  T
Q  219 taggagtcctattactaaca 238  Q
    ||||||||||||||||||||    
T  10582622 taggagtcctattactaaca 10582603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 49122061 - 49121842
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgt 118  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  49122061 attcgagagcttgatctctccctaccaatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctgt 49121962  T
Q  119 tacatagaagtttagtaaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactattattctataactgctgccct 218  Q
    ||||||||||||||||| ||| |||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49121961 tacatagaagtttagtagacaacaattacttcacacaagtaacagttacttatttataatattattaaataaactactattattctataactgctgccct 49121862  T
Q  219 taggagtcctattactaaca 238  Q
    ||||||||||||||||||||    
T  49121861 taggagtcctattactaaca 49121842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 33 - 246
Target Start/End: Complemental strand, 49123370 - 49123157
Alignment:
Q  33 tctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacatagaagttta 132  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  49123370 tctctccctaccaatcctttaccccaatccctgaatacctttcttttcttctgcatcttatttataatactaagtcctatagctgttacatagaagttta 49123271  T
Q  133 gtaaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactattattctataactgctgcccttaggagtcctatta 232  Q
    ||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49123270 gtagacagcaattactacacacaagtaacagttacttatttataatattattaaataaactactattattctataactgctgcccttaggagtcctatta 49123171  T
Q  233 ctaacaatactccc 246  Q
    ||||||||||||||    
T  49123170 ctaacaatactccc 49123157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 49122250 - 49122123
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgt 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  49122250 attcgagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctgt 49122151  T
Q  119 tacatagaagtttagtaaacagcaatta 146  Q
    ||||||||||||||| | ||| ||||||    
T  49122150 tacatagaagtttagcagacaacaatta 49122123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 8788624 - 8788855
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatacta----attcctatag 114  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    | ||||||||    
T  8788624 attcgaaagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaactcactcctatag 8788723  T
Q  115 ttgttacatagaagtttagt----------------aaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactat 198  Q
      ||||||||  ||||||||                | |||||||||||| || | ||||||| |||||| |||||||||| |||||||||||| ||||     
T  8788724 cagttacatattagtttagtagacaaacactactgcagacagcaattactgcacataagtaacagttactaatttataatactattaaataaacaactag 8788823  T
Q  199 tattctataactgctgcccttaggagtcctat 230  Q
    |||||||||||| || ||||||||||||||||    
T  8788824 tattctataacttcttcccttaggagtcctat 8788855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 242
Target Start/End: Original strand, 23541068 - 23541289
Alignment:
Q  24 agagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatc-ttatttataatactaa-ttcctatagttgttac 121  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||  | |||||||||| |||||| ||||| |||||||||| | |||||||  |||||    
T  23541068 agagcttggtctctccctaccaatccattatcccaatccctgaatgtccttcttttcctttgcatctttattcataatactaactccctatagcagttac 23541167  T
Q  122 atagaagtttagtaaacagcaattactacatacaagtaacggttacttatttataatattattaaataaa----ctactattattctataactgctgccc 217  Q
    |||||||||  | | | |||| | ||| |  ||| ||||| |||||| |||||||||| |||||||||||    |||||| || ||| ||||| ||||||    
T  23541168 atagaagttctgcagatagcagtcactgc--acatgtaaccgttactaatttataata-tattaaataaacaatctactaatactctgtaacttctgccc 23541264  T
Q  218 ttaggagtcctattactaacaatac 242  Q
     || |||||||||| ||||||||||    
T  23541265 ctatgagtcctattgctaacaatac 23541289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 5721752 - 5721703
Alignment:
Q  181 tattaaataaactactattattctataactgctgcccttaggagtcctat 230  Q
    |||||||||||| |||| |||| |||||||  ||||||||||||||||||    
T  5721752 tattaaataaacaactaatattttataacttatgcccttaggagtcctat 5721703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 11359619 - 11359668
Alignment:
Q  181 tattaaataaactactattattctataactgctgcccttaggagtcctat 230  Q
    |||||||||||| |||| ||||||||||||  ||| ||||||||||||||    
T  11359619 tattaaataaacaactaatattctataacttatgctcttaggagtcctat 11359668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 6082530 - 6082303
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgt 118  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||| |||    
T  6082530 attcgagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttataataataagtcctatagctgt 6082431  T
Q  119 tacatagaagtttagtaaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactattattctataactgctgccct 218  Q
    ||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6082430 tacatagaagtttagtagacagcaattactacacacaagtaacagttacttatttataatattattaaataaactactattattccataactgctgccct 6082331  T
Q  219 taggagtcctattactaacaatactccc 246  Q
    ||||||||||||||||||||||||||||    
T  6082330 taggagtcctattactaacaatactccc 6082303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 6081323 - 6081104
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgt 118  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||    
T  6081323 attcgagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttataatactaagtcctatagctgt 6081224  T
Q  119 tacatagaagtttagtaaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactattattctataactgctgccct 218  Q
    ||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6081223 tacatagaagtttagtagacagcaattactacacacaagtaacagttacttatttataatattattaaataaactactattattccataactgctgccct 6081124  T
Q  219 taggagtcctattactaaca 238  Q
    ||||||||||||||||||||    
T  6081123 taggagtcctattactaaca 6081104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 17166131 - 17166196
Alignment:
Q  181 tattaaataaactactattattctataactgctgcccttaggagtcctattactaacaatactccc 246  Q
    |||||||||||| |||| ||||||||||||  || |||||||||||||||  ||||| ||||||||    
T  17166131 tattaaataaacaactaatattctataacttatggccttaggagtcctatatctaacgatactccc 17166196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 27021194 - 27021151
Alignment:
Q  193 tactattattctataactgctgcccttaggagtcctattactaa 236  Q
    ||||| |||| ||||||| |||||||||||||||||||||||||    
T  27021194 tactaatattatataacttctgcccttaggagtcctattactaa 27021151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 22950385 - 22950166
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgt 118  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||    
T  22950385 attcgagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttattttcctctgcatcttatttataatactaagtcctatagctgt 22950286  T
Q  119 tacatagaagtttagtaaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactattattctataactgctgccct 218  Q
    ||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22950285 tacatagaagtttagtagacagcaattactacacacaagtaacagttacttatttataatattattaaataaactactattattctataactgctgccct 22950186  T
Q  219 taggagtcctattactaaca 238  Q
    ||||||||||||||||||||    
T  22950185 taggagtcctattactaaca 22950166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 29526129 - 29526362
Alignment:
Q  19 attcgagagcttggtctctccctacctatccttta-tcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttg 117  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  29526129 attcgagagcttggtctctccctaccaatcctttaatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctg 29526228  T
Q  118 ttacatagaagtttagtaaacagcaattactac-----atacaagtaacggttacttatttataatattattaaataaactactattattctataactgc 212  Q
    |||||||||||||||||| ||||||||||||||     | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29526229 ttacatagaagtttagtagacagcaattactacacacaacacaagtaacagttacttatttataatattattaaataaactactattattctataactgc 29526328  T
Q  213 tgcccttaggagtcctattactaacaatactccc 246  Q
    ||||||||||||||||||||||||||||||||||    
T  29526329 tgcccttaggagtcctattactaacaatactccc 29526362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 29527343 - 29527560
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgt 118  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| |||    
T  29527343 attcaagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttaaaatactaagtccaatagctgt 29527442  T
Q  119 tacatagaagtttagtaaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactattattctataactgctgccct 218  Q
    ||||||||||||||||| ||||||||||||||| ||||  ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29527443 tacatagaagtttagtagacagcaattactacacacaa--aacagttacttatttataatattattaagtaaactactattattctataactgctgccct 29527540  T
Q  219 taggagtcctattactaaca 238  Q
    ||||||||||||||||||||    
T  29527541 taggagtcctattactaaca 29527560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 19934678 - 19934486
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgt 118  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| || |||||||||    
T  19934678 attcgagagcttggtctctccctaccaatcctttatcccaatccctaaatgcctttcttttcctctgcatcttatttataatactaagtcttatagttgt 19934579  T
Q  119 tacatagaagtttagtaaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactattattctataactg 211  Q
    ||||||||||||||||| || |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19934578 tacatagaagtttagtagacggcaattactacacacaagtaacagttacttatttataatattattaaataaactactattattctataactg 19934486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 39701679 - 39701896
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa----ttcctatag 114  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     ||||||||    
T  39701679 attcgagagcttggtctctccctaccaatcctttatcccaatccctgaatgcctttcttttcctctgcatcttatttataatactaactctctcctatag 39701778  T
Q  115 ttgttacatagaagtttagtaaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactattattctataactgctg 214  Q
      ||||||||||||||||||| |||||||||||| || | ||||||| |||||| ||||      | | |||| || |||||| |||||| ||||| |||    
T  39701779 cagttacatagaagtttagtagacagcaattactgcacataagtaacagttactaattt------taaataaacaatctactaatattctgtaacttctg 39701872  T
Q  215 cccttaggagtcctattactaaca 238  Q
    ||||||||||||||||| ||||||    
T  39701873 cccttaggagtcctattgctaaca 39701896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 39702909 - 39703126
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa----ttcctatag 114  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||| ||     ||||||||    
T  39702909 attcgagagcttggtctctccctaccgatcctttatcccaatccctgaatgcctttcttttcctttgcaacttatttataatacaaactctctcctatag 39703008  T
Q  115 ttgttacatagaagtttagtaaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactattattctataactgctg 214  Q
      ||||||||||||||||||| ||||||| |||| || | ||||||| |||||| ||||      | | |||| || |||||| |||||| ||||| |||    
T  39703009 cagttacatagaagtttagtagacagcaaatactgcacataagtaacagttactaattt------taaataaacaatctactaatattctgtaacttctg 39703102  T
Q  215 cccttaggagtcctattactaaca 238  Q
    ||||||||||||||||| ||||||    
T  39703103 cccttaggagtcctattgctaaca 39703126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 41051019 - 41051152
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa----ttcctatag 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||     |||||||     
T  41051019 attcaagagcttggtctctccctacctatcctttatcccaatccctgaatatctgtcttttcctctgcatcttatttataatactaactctctcctatat 41051118  T
Q  115 ttgttacatagaagtttagtaaacagcaattact 148  Q
      ||||||||||||||||||| | ||||| ||||    
T  41051119 cagttacatagaagtttagtagatagcaactact 41051152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 41051194 - 41051253
Alignment:
Q  179 attattaaataaactactattattctataactgctgcccttaggagtcctattactaaca 238  Q
    |||||||||||||| ||||   ||||||||||  ||||||||||||||||||||||||||    
T  41051194 attattaaataaacaactagctttctataacttatgcccttaggagtcctattactaaca 41051253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 41108877 - 41108828
Alignment:
Q  181 tattaaataaactactattattctataactgctgcccttaggagtcctat 230  Q
    |||||||||||| |||| ||||||||||||  ||||||||||||||||||    
T  41108877 tattaaataaacaactaatattctataacttatgcccttaggagtcctat 41108828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 18690936 - 18690887
Alignment:
Q  181 tattaaataaactactattattctataactgctgcccttaggagtcctat 230  Q
    |||||||||||| |||| ||||||||||||  ||| ||||||||||||||    
T  18690936 tattaaataaacaactaatattctataacttatgctcttaggagtcctat 18690887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 33215264 - 33215321
Alignment:
Q  75 cttttcctctgcatc-ttatttataatactaattc-ctatagttgttacatagaagtt 130  Q
    ||||||||||||||| |||||||||||||||| || ||||||  ||||||||||||||    
T  33215264 cttttcctctgcatctttatttataatactaactcactatagcagttacatagaagtt 33215321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 177954 - 178173
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgt 118  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  177954 attcgagagcttggtctctccctaccaatcctttaccccaatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctgt 178053  T
Q  119 tacatagaagtttagtaaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactattattctataactgctgccct 218  Q
    ||||||||| ||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  178054 tacatagaaatttagtagacagcaattactacacacaagtaacagttacttatttataatattattaaataaactactattattctataactgctgccct 178153  T
Q  219 taggagtcctattactaaca 238  Q
    ||||||||||||||||||||    
T  178154 taggagtcctattactaaca 178173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 177843 - 177775
Alignment:
Q  171 tttataatattattaaataaactactattattctataactgctgcccttaggagtcctattactaacaa 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  177843 tttataatattattaaataaactactattattctataactgctgcccttaggagtcctattactaacaa 177775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 177831 - 177893
Alignment:
Q  174 ataatattattaaataaactactattattctataactgctgcccttaggagtcctattactaa 236  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  177831 ataatattataaaataaactactattattctataactgctgcccttaggagtcctattactaa 177893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 54994731 - 54994512
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgt 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||    
T  54994731 attcgagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagcagt 54994632  T
Q  119 tacatagaagtttagtaaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactattattctataactgctgccct 218  Q
    ||||||||||||||||| ||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54994631 tacatagaagtttagtagacagcaattactacacataagtaacagttacttatttataatattattaaataaactactattattctataactgctgccct 54994532  T
Q  219 taggagtcctattactaaca 238  Q
    ||||||||||||||||||||    
T  54994531 taggagtcctattactaaca 54994512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 7197838 - 7197615
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattc----ctatag 114  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    || |||    
T  7197838 attcgagagcttggtctctccctaccaatcctttatcccaatccctgaatgcctttcttttcctctgcatcttatttataatactaactctctcctgtag 7197739  T
Q  115 ttgttacatagaagtttagtaaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactattattctataactgctg 214  Q
      ||||||||||||||| ||| |||||||||||| || | ||||||| || ||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  7197738 cagttacatagaagttttgtagacagcaattactgcacataagtaacagtaactaatttataatattattaaataaactactattattctataactactg 7197639  T
Q  215 cccttaggagtcctattactaaca 238  Q
    ||||||||||||||||||||||||    
T  7197638 cccttaggagtcctattactaaca 7197615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 2386391 - 2386582
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgt 118  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||   ||    
T  2386391 attcgagagcttggtctctccctacctatcctttatctcaatccctgaatgcctttcttttcctctgcatcttatttataatactaagtcctataacagt 2386490  T
Q  119 tacatagaagtttagtaaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactattattctataact 210  Q
    |||||| |||||||||| |||||||||||| || ||||| ||| |||||||||||||||||||||||||||||| |||| ||||||||||||    
T  2386491 tacataaaagtttagtagacagcaattactgcagacaagcaacagttacttatttataatattattaaataaacaactagtattctataact 2386582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 45826243 - 45826454
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||| |     
T  45826243 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaatt----tagtaga 45826338  T
Q  119 tacatagaagtttagtaaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactattattctataactgctgccct 218  Q
     |   |  | |||  |||     ||||||| || | ||||||| |||||| |||||||||| |||||||||||| |||| | |||||||||| |||||||    
T  45826339 caggcactacttttctaa-----aattactgcacataagtaacagttactaatttataatactattaaataaacaactagtgttctataacttctgccct 45826433  T
Q  219 taggagtcctattactaacaa 239  Q
    ||||||||||||  |||||||    
T  45826434 taggagtcctatatctaacaa 45826454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 592623 - 592392
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatacta----attcctatag 114  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    | ||||||||    
T  592623 attcgagagcttgggctctccctaccaatcctttatcccaatccctgaatacctttcttttcctttgcatcttatttataatactaactcactcctatag 592524  T
Q  115 ttgttacatagaagtttagt----------------aaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactat 198  Q
      ||||||||  ||||||||                | |||||||||||| || | ||||||| |||||| |||||||||| |||||||||||| ||||     
T  592523 cagttacatattagtttagtagacaggcactactgcagacagcaattactgcacataagtaacagttactaatttataatactattaaataaacaactag 592424  T
Q  199 tattctataactgctgcccttaggagtcctat 230  Q
    |||||||||||| || ||||||||||||||||    
T  592423 tattctataacttcttcccttaggagtcctat 592392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 48637629 - 48637869
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatacta----attcctatag 114  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    | ||||||||    
T  48637629 attcgagagcttggtctctccctaccaatcctttatcccaatccctcaatacctctcttttcctctgcatcttatttataatactaactcactcctatag 48637728  T
Q  115 ttgttacatagaagtttagt----------------aaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactat 198  Q
      ||||||||  ||||||||                | |||||||||||| || | ||||||  |||||| |||||||||| |||||||||||| ||||     
T  48637729 cagttacatattagtttagtagacaggcactactgcagacagcaattactgcacataagtaatagttactaatttataatactattaaataaacaactag 48637828  T
Q  199 tattctataactgctgcccttaggagtcctattactaacaa 239  Q
    |||||||||||  |||||||||||||||||||  |||||||    
T  48637829 tattctataacctctgcccttaggagtcctatatctaacaa 48637869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 47 - 240
Target Start/End: Complemental strand, 40976876 - 40976663
Alignment:
Q  47 tcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcc----tatagttgttacatagaagtttagta------a 136  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||    |||||  ||||||| |||||||||||      |    
T  40976876 tcctttatcccaatccctgcatgcctttcttttcctctgcatcttatttataagactaattccctcctatagcagttacattgaagtttagtagccagca 40976777  T
Q  137 ac----------agcaattactacatacaagtaacggttacttatttataatattattaaataaactactattattctataactgctgcccttaggagtc 226  Q
    ||          |||||||||| || | |||||||  ||||| |||||||||| |||||||||||| |||| |||||||||||| |||||||||||||||    
T  40976776 actactgcagccagcaattactgcacataagtaacaattactaatttataatactattaaataaacaactagtattctataacttctgcccttaggagtc 40976677  T
Q  227 ctattactaacaat 240  Q
    ||||  ||||||||    
T  40976676 ctatatctaacaat 40976663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 51274504 - 51274436
Alignment:
Q  23 gagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatctt 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  51274504 gagagcttggtctctccctacctatcctttatcccaatccctgaatgcccttcttttcctctgcatctt 51274436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 35389209 - 35389144
Alignment:
Q  181 tattaaataaactactattattctataactgctgcccttaggagtcctattactaacaatactccc 246  Q
    |||||||||||| |||| |||| |||||||  ||| ||||||||||||||  ||||||||||||||    
T  35389209 tattaaataaacaactaatattttataacttatgcacttaggagtcctatatctaacaatactccc 35389144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 51273651 - 51273604
Alignment:
Q  192 ctactattattctataactgctgcccttaggagtcctattactaacaa 239  Q
    |||||| |||||| ||||| |||||||||||||||||||| |||||||    
T  51273651 ctactaatattctgtaacttctgcccttaggagtcctattgctaacaa 51273604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 25184637 - 25184588
Alignment:
Q  181 tattaaataaactactattattctataactgctgcccttaggagtcctat 230  Q
    |||||||||||| |||| ||||||||||||  |||||||| |||||||||    
T  25184637 tattaaataaacaactaatattctataacttatgcccttacgagtcctat 25184588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 25184729 - 25184672
Alignment:
Q  75 cttttcctctgcatc-ttatttataatactaa-ttcctatagttgttacatagaagtt 130  Q
    ||||||||||||||| |||||||||||||||| | |||||||  ||||||||||||||    
T  25184729 cttttcctctgcatctttatttataatactaactccctatagcagttacatagaagtt 25184672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 205680 - 205899
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgt 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||| |||    
T  205680 attcgagagcttggtctctccctaccaatcctttatcccaatccctgaatatctttcttttcttctgcatcttatttataatactaagtcctatagctgt 205779  T
Q  119 tacatagaagtttagtaaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactattattctataactgctgccct 218  Q
    ||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  205780 tacatagaagtttagtagacagcaattactacacacaagtaacagttacttatttataatattattaaataaactactattattctataactgctgcccg 205879  T
Q  219 taggagtcctattactaaca 238  Q
    ||||||||||||||||||||    
T  205880 taggagtcctattactaaca 205899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 211757 - 211843
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa 105  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  211757 attcgagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttataatactaa 211843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 24 - 246
Target Start/End: Complemental strand, 12341 - 12120
Alignment:
Q  24 agagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgttacat 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| ||||||||    
T  12341 agagcttggtctctccctacctatcctttatcccaatccctgaataactttcttttcctctgcatcttatttataataccaagtcctatagctgttacat 12242  T
Q  124 agaagtttagtaaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactattattctataactgctgcccttagga 223  Q
    ||||||| |||| ||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12241 agaagtt-agtagacaacaattactacacacaagtaacagttacttatttataatattattaaataaactactattattctataactgctgcccttagga 12143  T
Q  224 gtcctattactaacaatactccc 246  Q
    |||||||||||||||||||||||    
T  12142 gtcctattactaacaatactccc 12120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 11197 - 10972
Alignment:
Q  20 ttcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa----ttcctatagt 115  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||     ||||||||     
T  11197 ttcgagagcttggtctctccctaccaatcctttatcccaatccctgaatatctttcttttcttctgcatcttatttataatactaactctctcctatagc 11098  T
Q  116 tgttacatagaagtttagtaaacagcaattactacatacaagtaacggttacttatttataatattattaaataaa----ctactattattctataactg 211  Q
     ||||||||||||||||||| |||||||||||| || | || |||| ||||||  ||||||||| |||||||||||    |||||| |||||||||||||    
T  11097 agttacatagaagtttagtagacagcaattactgcacataactaacagttactactttataata-tattaaataaacaatctactaatattctataactg 10999  T
Q  212 ctgcccttaggagtcctattactaaca 238  Q
    |||||||||||||||||||||||||||    
T  10998 ctgcccttaggagtcctattactaaca 10972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 11962151 - 11961933
Alignment:
Q  20 ttcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaattcctatagttgtt 119  Q
    |||||||||||||||| |||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  11962151 ttcgagagcttggtctatccctaccaatcctttaccccaatgcctgaatacctttcttttcctctgcatcttatttataatactaagtcctatagctgtt 11962052  T
Q  120 acatagaagtttagtaaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactattattctataactgctgccctt 219  Q
    |||||||| ||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11962051 acatagaaatttagtagacagcaattactacacacaagtaacagttacttatttataatattattaaataaactactattattctataactgctgccctt 11961952  T
Q  220 aggagtcctattactaaca 238  Q
    |||||||||||||||||||    
T  11961951 aggagtcctattactaaca 11961933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 45638752 - 45638984
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttat-----ttataatactaa----ttcc 109  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||     ||||||||||||     |||    
T  45638752 attcgagagcttggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaactccctcc 45638851  T
Q  110 tatagttgttacatagaagtttagt----------------aaacagcaattactacatacaagtaacggttacttatttataatattattaaataaact 193  Q
    |||||  ||||||||||||||||||                | |||||||||||  || | ||||||| |||||| |||||||||| ||||||||||||     
T  45638852 tatagcagttacatagaagtttagttgacagcaactactgcagacagcaattaccgcacataagtaacagttactaatttataatactattaaataaaca 45638951  T
Q  194 actattattctataactgctgcccttaggagtc 226  Q
    |||| |||||||||||| |||||||||||||||    
T  45638952 actagtattctataacttctgcccttaggagtc 45638984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 3567088 - 3567008
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaat-acctttcttttcctctgcatc-ttatttataa 99  Q
    |||||| || |||||||||||||||||||||||||| |||||||  ||||  || ||||||||||||||||| ||||||||||    
T  3567088 attcgatagtttggtctctccctacctatcctttattccaatcc--gaatgccccttcttttcctctgcatctttatttataa 3567008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 25542486 - 25542543
Alignment:
Q  75 cttttcctctgcatc-ttatttataatactaattc-ctatagttgttacatagaagtt 130  Q
    ||||||||||||||| |||||||||||||||| || ||||||  ||||||||||||||    
T  25542486 cttttcctctgcatctttatttataatactaactcactatagcagttacatagaagtt 25542543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 80839 - 80592
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatacta----attcctatag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    | ||||||||    
T  80839 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttctttttctctgcatcttatttataatactaactcactcctatag 80740  T
Q  115 ttgttacatagaagtttagtaaacag----------------caattactacatacaagtaacggttacttatttataatattattaaataaactactat 198  Q
      ||||||||  ||||||||| ||||                |||||||| || | ||||||| |||||| |||||||||| |||||||||||| ||||     
T  80739 cagttacatattagtttagtagacaggcactactgcagacaacaattactgcacataagtaacagttactaatttataatactattaaataaacaactag 80640  T
Q  199 tattctataactgctgcccttaggagtcctattactaacaatactccc 246  Q
    |||||||||||| |||||||||||||||||||  ||||||||||||||    
T  80639 tattctataacttctgcccttaggagtcctatatctaacaatactccc 80592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 79643 - 79403
Alignment:
Q  19 attcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatacta----attcctatag 114  Q
    ||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||    | ||||| ||    
T  79643 attcgagagcttggtctctccgtacctatcctttatcctaatccatgaatacctttattttcctctgcatcttatttataatactaactcactcctacag 79544  T
Q  115 ttgttacatagaagtttagt----------------aaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactat 198  Q
      ||||||||  ||||||||                | |||||||||||| || | ||||||| |||||| |||||||||| ||||||||||| |||||     
T  79543 cagttacatattagtttagtagacaggcactactgcagacagcaattactgcacataagtaacagttactaatttataatactattaaataaaatactag 79444  T
Q  199 tattctataactgctgcccttaggagtcctattactaacaa 239  Q
    |||||||||||| |||||||||||||||||||  |||||||    
T  79443 tattctataacttctgcccttaggagtcctatatctaacaa 79403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 23 - 233
Target Start/End: Complemental strand, 40254522 - 40254294
Alignment:
Q  23 gagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa-ttcctatagttgttac 121  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  || | |||||||  |||||    
T  40254522 gagagcttggtctctccctaccaatcctttatcccaatccctgaat-cctttcttttcctctgcatcttatttataatatgaactccctatagcagttac 40254424  T
Q  122 atagaagtttagt------------------aaacagcaattactacatacaagtaacggttacttatttataatattattaaataaactactattattc 203  Q
    |||||||||||||                  | |||||||||||| || ||||||||| |||||| ||||||||||||||||||||||| |||| |||||    
T  40254423 atagaagtttagtagagataacaattgatgcagacagcaattactgcacacaagtaacagttactaatttataatattattaaataaacaactagtattc 40254324  T
Q  204 tataactgctgcccttaggagtcctattac 233  Q
    |||| || || |||||||||||||||||||    
T  40254323 tatagcttcttcccttaggagtcctattac 40254294  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 36241366 - 36241415
Alignment:
Q  181 tattaaataaactactattattctataactgctgcccttaggagtcctat 230  Q
    |||||||||||| |||| ||||||||||||  ||||||||||||||||||    
T  36241366 tattaaataaacaactaatattctataacttatgcccttaggagtcctat 36241415  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 2411156 - 2411264
Alignment:
Q  25 gagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatc-ttatttataatactaa-ttcctatagttgttaca 122  Q
    |||||||||||||||||||| ||||||||||| |||  | |||| ||  | |||||||||||| | || ||||||||||||| | |||||||  ||||||    
T  2411156 gagcttggtctctccctaccaatcctttatccaaataaccgaatgcccctattttcctctgcaactttgtttataatactaactccctatagaagttaca 2411255  T
Q  123 tagaagttt 131  Q
    || ||||||    
T  2411256 taaaagttt 2411264  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 36241268 - 36241325
Alignment:
Q  75 cttttcctctgcatc-ttatttataatactaattc-ctatagttgttacatagaagtt 130  Q
    ||||||||||||||| |||||||||||||||| || ||||||  ||||||||||||||    
T  36241268 cttttcctctgcatctttatttataatactaactcactatagcagttacatagaagtt 36241325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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