View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12084_high_10 (Length: 397)
Name: NF12084_high_10
Description: NF12084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12084_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 33 - 254
Target Start/End: Original strand, 3163314 - 3163530
Alignment:
| Q |
33 |
caaaggaaactaatcctattatttgaaactgtaaaatgtgcactcttctttcagtaaggagatacaaaagaaataaaccagtggctgtttttccatttgt |
132 |
Q |
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| T |
3163314 |
caaaggaaactaatcctcttatttgaaactgtaaaatgtacactcttctttcagtaatgagatacaaaaaaaaaa----agtggctgtttttccatttgt |
3163409 |
T |
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| Q |
133 |
gttcaacaaaatacatgggaaaatagttatattaaactgtttttaaacaaagtgaatcacac-agaagaaaccattaaaattttaaaatgtaagaccata |
231 |
Q |
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| T |
3163410 |
gatcaacaaaatacatggcaaagtagttatattgaattgtttttgaacaatttgaatcacacaagaataaaccaatacaattttaaaatgtaaggcc--a |
3163507 |
T |
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| Q |
232 |
tagataacaatgtacaaaaactt |
254 |
Q |
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| T |
3163508 |
tagataacaatgttcaacaactt |
3163530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 3166762 - 3166794
Alignment:
| Q |
279 |
ccaatgcataaactatttggagatacagcacag |
311 |
Q |
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| T |
3166762 |
ccaatgcataaactatttggagatacagcacag |
3166794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 331 - 396
Target Start/End: Complemental strand, 3855697 - 3855632
Alignment:
| Q |
331 |
caagacgcctataatctttatatatcaatggcgaagtcctttatctttgacagacagcctcctatc |
396 |
Q |
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| T |
3855697 |
caagacgcctataatctttatatatcaatggcgaagtcctttatctttgacagacagcctcctatc |
3855632 |
T |
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