View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12084_high_12 (Length: 351)
Name: NF12084_high_12
Description: NF12084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12084_high_12 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 79 - 351
Target Start/End: Complemental strand, 3480210 - 3479938
Alignment:
| Q |
79 |
gcagaacctgtgtttagcaaggcaggagaaacgattggagtaaaccatatgggaatggaaataaccgatcaggtaaaaattgttattttgcttttcgaag |
178 |
Q |
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| T |
3480210 |
gcagaacctgtgtttagcaaggcaggagaaacaattggagtaaaccatatgggaatggaaataaccgatcaggtaaaaattgttattttgctttttgaag |
3480111 |
T |
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| Q |
179 |
ttacttgcattgtcttaaaattttggttgggcttaactcatccaatgtaaggtgtgagctgctccgacttattataaacaaatttacaagcaatatctca |
278 |
Q |
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| T |
3480110 |
ttacttgcattgtcttaaaattttggttgggcttaactcatccaatgtaaggtgtgagctgccccgacttattataaacaaatttacaagcaatatctca |
3480011 |
T |
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| Q |
279 |
tccgatgtgatctatgaagtgtgactcgagtgacccgatatcaggccactaaggtcacgctttagatatctag |
351 |
Q |
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| T |
3480010 |
tccaatgtgatctatgaagtgtgactcgagtgacccgatatcaggccactaaggtcactctttagatatctag |
3479938 |
T |
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Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 81 - 168
Target Start/End: Complemental strand, 3455606 - 3455519
Alignment:
| Q |
81 |
agaacctgtgtttagcaaggcaggagaaacgattggagtaaaccatatgggaatggaaataaccgatcaggtaaaaattgttattttg |
168 |
Q |
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| T |
3455606 |
agaacctgtgtttagcaaggcaggtgaaacaattggagtaaactatatgggaatggaaataacagatcaggtaaatattgttattttg |
3455519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 3855632 - 3855697
Alignment:
| Q |
1 |
gataggaggctgtctgtcaaagataaaggacttcgccattgatatataaagattataggcgtcttg |
66 |
Q |
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| T |
3855632 |
gataggaggctgtctgtcaaagataaaggacttcgccattgatatataaagattataggcgtcttg |
3855697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 155
Target Start/End: Original strand, 48694740 - 48694814
Alignment:
| Q |
81 |
agaacctgtgtttagcaaggcaggagaaacgattggagtaaaccatatgggaatggaaataaccgatcaggtaaa |
155 |
Q |
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| T |
48694740 |
agaacctgtattcagcaaggcaggtgaaacaattggaatcaattacatgggaatggatgtaaccgatcaggtaaa |
48694814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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