View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12084_high_5 (Length: 531)
Name: NF12084_high_5
Description: NF12084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12084_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 29 - 531
Target Start/End: Original strand, 51912406 - 51912905
Alignment:
| Q |
29 |
gtgtgcattgtccaatattaggtgcttgaatcaccttgcttttagtgtttgatttcacagactttgattgctaaaggctgttgagttgtatgacagatcg |
128 |
Q |
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| T |
51912406 |
gtgtgcattgtccaatattaggtgcttgaatcaccttgcttttagtgtttgatttcacagactttgattgctaaaggctgttgagttgtatgacagatcg |
51912505 |
T |
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| Q |
129 |
tgagttctgctagtttcctaaaatcatgataagaatagtgtttttatctgccnnnnnnnnnnnnnnnnnngtgtcttgttttttgtcttattaattattt |
228 |
Q |
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| T |
51912506 |
tgagttctgctagtttcctaaaatcatgataagaatagtgtttttatctgccaaaagagaaaagaaaaaagtgtcttgttttttgtcttattaattattt |
51912605 |
T |
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| Q |
229 |
tcacctcaagttttcaatcttagtggtcctacatgaaatttgatgatcgatgaaataatcaaattgggtgcacggcaggaaaataagtgaggggtgtgag |
328 |
Q |
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| T |
51912606 |
tcacctcaagttttcaatcttagtggtcctacatgaaatttgatgatcgatgaaataatcaaattgggtgcacggcaggaaaataagtgaggggtgtgag |
51912705 |
T |
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| Q |
329 |
tgagtgtgagctgccnnnnnnnnnnctttctgcataactgacacacacagagcacagagcacaggcaggacacacgggaaatgactcttcattcggtaca |
428 |
Q |
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| T |
51912706 |
tgagtgtgagctgcctttttttt---tttctgcataactgacacacacagagcacagagcacaggcaggacacacgggaaatgactcttcattcggtaca |
51912802 |
T |
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| Q |
429 |
ccaattagtggtcattcaagctcaataacgtttggaataagacatttggaaataaccggtaattagtaataattgagaaggaagtattgttaactttgat |
528 |
Q |
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| T |
51912803 |
ccaattagtggtcattcaagctcaataacgtttggaataagacatttggaaataaccggtaattagtaataattgagaaggaagtattgttaactttgat |
51912902 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 5963627 - 5963685
Alignment:
| Q |
45 |
attaggtgcttgaatcaccttgcttttagtgtttgatttcacagactttgattgctaaa |
103 |
Q |
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| T |
5963627 |
attagatgcttcaatcacctttcttttagtgtttgatttcatatacttcgatttctaaa |
5963685 |
T |
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