View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12084_low_1 (Length: 496)
Name: NF12084_low_1
Description: NF12084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12084_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 477
Target Start/End: Original strand, 5678009 - 5678470
Alignment:
| Q |
18 |
catataaagcttttttgcacttttaatcagtcataaaaacatatgtaacatcttgctttcaaattcaagttatatattgagacagaaagnnnnnnncatg |
117 |
Q |
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| T |
5678009 |
catataaagtttttttgcacttttaatcagtcataaaaacatatgtaacatcttgctttcaaattcaagttatatattgagacagaaagaaaaaaacatg |
5678108 |
T |
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| Q |
118 |
acatgttttgtaacaaataaacattaacaattgattgacaagtgacatcttacaagattaagaaatcattactcttcacttgaatgattcaaagcaaata |
217 |
Q |
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| T |
5678109 |
acatgttttgtaacaaataaacattaacaattgattgacaagtgacatcttacaagattaagaaatcattactcttcacttgaatgattcaaagcaaata |
5678208 |
T |
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| Q |
218 |
agtttgatatatattatatctatgcagcaaagagccactaccttatgtaaagtaaaggaagattctccaatttggacattgacatcacttggaatctcct |
317 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5678209 |
agtttgatatatattatatctatgcagcaaagagtcactaccttatgtaaagtaaaggaagattcaccaatttggacattgacatcacttggaatctcct |
5678308 |
T |
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| Q |
318 |
gagaaaaaatcctataattaagcaatacaactcattggtttcagttactaaaatccaacaaaagttagcaaacaagaacatgcacaagaaaagtgtcaag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5678309 |
gagaaaaaatcctataattaagcaatacaactcattggtttcagttactaaaatccaacaaaagttagcaaacaagaacatgcacaagaaaagtgtcaag |
5678408 |
T |
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| Q |
418 |
tacatttgacatatatatacataaacat--nnnnnnntataccagtcacttgttcttttcat |
477 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5678409 |
tacatttgacatatatatacataaacataaaaaaaaatataccagtcacttgttcttttcat |
5678470 |
T |
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