View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12085_high_18 (Length: 250)
Name: NF12085_high_18
Description: NF12085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12085_high_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 40054140 - 40054376
Alignment:
| Q |
1 |
cagcagagttacgagggttcgcagcagaggctcttttcccacttatcacggctctgaaaaaaccacatccagccaacaggggtccaggcctcgacccaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40054140 |
cagcagagttacgagggttcgcagcagaggctcttttcccacttatcacggctctgaaaaatccacatccagccaacaggggtccaggcctcgacccaat |
40054239 |
T |
|
| Q |
101 |
cataccagtcgggtgctcatgggatacatgaactgcaaatatagcctccacatcctccaaagcaccgtcttgtatcattcgctttgcaccattcccagct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40054240 |
cataccagtcgggtgctcatgggatacatgaactgcaaatatagcctccacatcctccaaagcaccgtcttgtatcattcgctttgcaccattcccagct |
40054339 |
T |
|
| Q |
201 |
tcttctgctggctggaataacagaattacagtaccct |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40054340 |
tcttctgctggctggaataacagaattacagtaccct |
40054376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University