View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12085_high_2 (Length: 542)
Name: NF12085_high_2
Description: NF12085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12085_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 375
Target Start/End: Complemental strand, 610248 - 609892
Alignment:
| Q |
16 |
caaatcattctaatgcattgattggtgtgtggtctaaagtatggtccacaacgtgctctctttgacattttctcccgcatttggtttcataatgaacatg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
610248 |
caaatcattctaatgcattgattggtgtgtggtctaaagtatggtccacaacgtgctctctttgacattttctcccgcatttggtttcataatgaacatg |
610149 |
T |
|
| Q |
116 |
tctttttatttctctcattgtgtttcaatctaagctgaaaaacaagaccaagaaactcactgaaaaagagttcaaggtgtgttattgtttcttaattccc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
610148 |
tctttttatttctctcattgtgtttcaatctaagctgaaaaacaagaccaagaaactcactgaaaaagagttcaaggtgtgttattgtttcttaattccc |
610049 |
T |
|
| Q |
216 |
ttgcatgccatgtttctttcttacattctttgttcttacattcttttacgttgtttgaattggggagagtgagtgagtgagagtgttgttgagcttaatt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
610048 |
ttgcatgccatgtttctttcttacattctttgttcttacattcttttacgttgtttgaattggggtgagtgag----tgagagtgttgttgagcttaatt |
609953 |
T |
|
| Q |
316 |
tgac-nnnnnnntaccttcatagaagaaattaaactactgtctcctttaaaagcttcctca |
375 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
609952 |
tgacaaaaaaaataccttcatagaagaaattaaactactgtctcctttaaaagcttcctca |
609892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 448 - 525
Target Start/End: Complemental strand, 609769 - 609692
Alignment:
| Q |
448 |
agggtgaattgaaaatttagtacaacatgtgtgttggtgaagatttacacaagatcataggattctattcttttgttt |
525 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
609769 |
agggtgaattgaaaatttagtacaacatgtgtgttggtgaagatttacacaagatcataggatcctattcttttgttt |
609692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 448 - 489
Target Start/End: Complemental strand, 609819 - 609778
Alignment:
| Q |
448 |
agggtgaattgaaaatttagtacaacatgtgtgttggtgaag |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
609819 |
agggtgaattgaaaatttagtacaacatgtgtgttggtgaag |
609778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University