View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12085_high_6 (Length: 446)

Name: NF12085_high_6
Description: NF12085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12085_high_6
NF12085_high_6
[»] chr3 (20 HSPs)
chr3 (22-412)||(49333051-49333440)
chr3 (46-246)||(23559911-23560113)
chr3 (24-236)||(12062216-12062430)
chr3 (25-237)||(35174215-35174427)
chr3 (66-236)||(48867267-48867434)
chr3 (49-283)||(51400310-51400545)
chr3 (24-152)||(43346365-43346493)
chr3 (24-158)||(21127995-21128129)
chr3 (46-158)||(26798818-26798930)
chr3 (54-158)||(39133117-39133221)
chr3 (46-158)||(11219522-11219634)
chr3 (54-158)||(17350014-17350118)
chr3 (54-158)||(32979188-32979292)
chr3 (88-158)||(42685013-42685083)
chr3 (82-152)||(48254807-48254877)
chr3 (25-158)||(53808389-53808522)
chr3 (54-158)||(34902906-34903010)
chr3 (113-155)||(37415157-37415199)
chr3 (74-132)||(45421229-45421287)
chr3 (54-158)||(47765538-47765642)
[»] chr1 (24 HSPs)
chr1 (24-308)||(13930435-13930721)
chr1 (24-308)||(14070964-14071249)
chr1 (46-271)||(51726640-51726868)
chr1 (24-158)||(14169689-14169822)
chr1 (69-148)||(21277109-21277188)
chr1 (196-308)||(21277291-21277403)
chr1 (68-137)||(8092712-8092781)
chr1 (105-158)||(40811403-40811456)
chr1 (94-238)||(22167913-22168059)
chr1 (168-236)||(38281047-38281115)
chr1 (68-158)||(9633889-9633979)
chr1 (55-137)||(44977322-44977404)
chr1 (46-152)||(49141414-49141520)
chr1 (54-158)||(50678463-50678566)
chr1 (24-158)||(14764299-14764433)
chr1 (340-381)||(8562700-8562741)
chr1 (83-147)||(35943367-35943431)
chr1 (68-158)||(9415738-9415827)
chr1 (180-222)||(13642408-13642450)
chr1 (335-381)||(21277433-21277478)
chr1 (231-280)||(48571920-48571970)
chr1 (335-381)||(48574009-48574051)
chr1 (66-158)||(26802055-26802147)
chr1 (54-158)||(30551501-30551605)
[»] chr7 (19 HSPs)
chr7 (45-302)||(25154700-25154961)
chr7 (46-255)||(46458525-46458737)
chr7 (25-237)||(10256194-10256407)
chr7 (68-236)||(131832-132001)
chr7 (28-158)||(26406199-26406329)
chr7 (24-255)||(24872060-24872292)
chr7 (66-158)||(33459455-33459547)
chr7 (68-158)||(35484223-35484312)
chr7 (24-152)||(45719685-45719813)
chr7 (31-142)||(27899142-27899253)
chr7 (67-158)||(28325185-28325276)
chr7 (46-136)||(14109005-14109095)
chr7 (46-136)||(14418962-14419052)
chr7 (95-146)||(25533332-25533383)
chr7 (68-158)||(44113543-44113632)
chr7 (89-158)||(4167586-4167655)
chr7 (57-158)||(41516256-41516357)
chr7 (71-143)||(8661800-8661872)
chr7 (112-152)||(10957070-10957110)
[»] chr5 (20 HSPs)
chr5 (24-302)||(40058088-40058367)
chr5 (46-307)||(19525050-19525312)
chr5 (24-237)||(32734201-32734415)
chr5 (53-238)||(2167345-2167531)
chr5 (24-304)||(5383012-5383288)
chr5 (46-236)||(38471381-38471573)
chr5 (28-239)||(12947986-12948198)
chr5 (73-239)||(12933870-12934037)
chr5 (69-158)||(223341-223430)
chr5 (95-158)||(24761620-24761683)
chr5 (46-150)||(15856625-15856729)
chr5 (32-131)||(12830877-12830976)
chr5 (32-131)||(12862857-12862956)
chr5 (24-158)||(22819430-22819563)
chr5 (53-147)||(14210242-14210336)
chr5 (54-150)||(18693798-18693894)
chr5 (88-158)||(7426775-7426845)
chr5 (46-135)||(42510206-42510295)
chr5 (66-158)||(21387749-21387841)
chr5 (112-152)||(28702729-28702769)
[»] chr4 (30 HSPs)
chr4 (31-236)||(6140193-6140399)
chr4 (25-237)||(50530574-50530787)
chr4 (46-283)||(52660001-52660238)
chr4 (46-236)||(17319134-17319327)
chr4 (24-158)||(38370352-38370487)
chr4 (24-216)||(11114833-11115026)
chr4 (46-307)||(28102168-28102415)
chr4 (68-158)||(38555188-38555278)
chr4 (46-158)||(31712418-31712530)
chr4 (24-158)||(26393039-26393173)
chr4 (24-158)||(56296263-56296397)
chr4 (66-232)||(48207556-48207721)
chr4 (24-158)||(38418929-38419063)
chr4 (68-158)||(43419288-43419377)
chr4 (45-158)||(3533520-3533633)
chr4 (94-158)||(1794556-1794620)
chr4 (24-152)||(35787866-35787994)
chr4 (54-158)||(44302820-44302924)
chr4 (46-158)||(56000379-56000491)
chr4 (82-152)||(29663770-29663840)
chr4 (46-135)||(34438498-34438587)
chr4 (88-155)||(42810115-42810182)
chr4 (53-131)||(44159184-44159262)
chr4 (88-158)||(53432199-53432269)
chr4 (24-73)||(6139067-6139116)
chr4 (46-135)||(17494219-17494308)
chr4 (73-158)||(40144655-40144740)
chr4 (54-158)||(29687890-29687994)
chr4 (112-152)||(35350024-35350064)
chr4 (112-152)||(39057683-39057723)
[»] chr6 (11 HSPs)
chr6 (24-283)||(293426-293686)
chr6 (46-272)||(31738455-31738682)
chr6 (24-140)||(14328704-14328820)
chr6 (24-140)||(14421714-14421830)
chr6 (68-236)||(16268655-16268824)
chr6 (46-236)||(9927697-9927889)
chr6 (46-158)||(27440087-27440199)
chr6 (177-246)||(14327248-14327317)
chr6 (177-246)||(14420258-14420327)
chr6 (48-126)||(2130877-2130955)
chr6 (180-222)||(22298827-22298869)
[»] chr8 (39 HSPs)
chr8 (46-238)||(13366882-13367074)
chr8 (68-304)||(37324459-37324690)
chr8 (69-304)||(44606254-44606485)
chr8 (46-236)||(35944000-35944191)
chr8 (53-238)||(2421123-2421310)
chr8 (46-273)||(19913584-19913810)
chr8 (24-150)||(20308675-20308801)
chr8 (24-150)||(21095308-21095434)
chr8 (46-148)||(36070270-36070372)
chr8 (196-308)||(36070425-36070537)
chr8 (222-308)||(37472645-37472732)
chr8 (24-238)||(8095416-8095633)
chr8 (46-237)||(8395087-8395279)
chr8 (53-158)||(31871494-31871592)
chr8 (24-158)||(24069358-24069492)
chr8 (54-158)||(10052204-10052308)
chr8 (46-158)||(34617107-34617219)
chr8 (24-158)||(7486147-7486281)
chr8 (56-158)||(37276155-37276257)
chr8 (200-255)||(29738518-29738573)
chr8 (83-158)||(7770810-7770885)
chr8 (83-158)||(7796720-7796795)
chr8 (83-158)||(7816001-7816076)
chr8 (24-158)||(37472473-37472606)
chr8 (24-158)||(39515269-39515403)
chr8 (113-158)||(32552457-32552502)
chr8 (113-158)||(39173277-39173322)
chr8 (46-135)||(39220771-39220860)
chr8 (54-158)||(21961923-21962027)
chr8 (79-158)||(10669354-10669433)
chr8 (45-108)||(16363774-16363837)
chr8 (25-152)||(36756135-36756262)
chr8 (335-381)||(36070567-36070612)
chr8 (46-136)||(39546611-39546701)
chr8 (68-158)||(40250159-40250248)
chr8 (113-158)||(35800889-35800934)
chr8 (54-135)||(44103231-44103312)
chr8 (111-155)||(32553820-32553864)
chr8 (111-155)||(35799610-35799654)
[»] chr2 (26 HSPs)
chr2 (27-255)||(37868852-37869083)
chr2 (46-255)||(10367331-10367542)
chr2 (46-254)||(14509301-14509510)
chr2 (72-230)||(11575326-11575484)
chr2 (46-238)||(12959535-12959729)
chr2 (46-307)||(7037058-7037314)
chr2 (68-150)||(25570790-25570872)
chr2 (24-158)||(28109781-28109915)
chr2 (53-232)||(8537111-8537289)
chr2 (28-129)||(4829539-4829640)
chr2 (46-158)||(35799604-35799716)
chr2 (339-400)||(29077047-29077108)
chr2 (24-158)||(7490109-7490241)
chr2 (68-158)||(15850572-15850661)
chr2 (46-158)||(12852978-12853090)
chr2 (66-232)||(42249621-42249786)
chr2 (340-381)||(5850495-5850536)
chr2 (113-158)||(23232330-23232375)
chr2 (88-152)||(3528183-3528247)
chr2 (231-282)||(29076940-29076992)
chr2 (54-158)||(29424524-29424628)
chr2 (88-137)||(7983628-7983677)
chr2 (54-135)||(14714592-14714673)
chr2 (24-124)||(3532264-3532364)
chr2 (46-158)||(23177766-23177878)
chr2 (46-158)||(23589023-23589135)
[»] scaffold0122 (1 HSPs)
scaffold0122 (46-254)||(16037-16247)
[»] scaffold0166 (1 HSPs)
scaffold0166 (95-158)||(4117-4180)
[»] scaffold0003 (1 HSPs)
scaffold0003 (46-158)||(47162-47274)
[»] scaffold1974 (1 HSPs)
scaffold1974 (46-158)||(540-652)
[»] scaffold1878 (1 HSPs)
scaffold1878 (46-158)||(622-734)
[»] scaffold0290 (1 HSPs)
scaffold0290 (46-158)||(9390-9502)
[»] scaffold0051 (1 HSPs)
scaffold0051 (54-158)||(39813-39917)
[»] scaffold2071 (1 HSPs)
scaffold2071 (99-158)||(590-649)
[»] scaffold0098 (1 HSPs)
scaffold0098 (24-158)||(40978-41112)
[»] scaffold0178 (1 HSPs)
scaffold0178 (46-158)||(1303-1413)
[»] scaffold0015 (1 HSPs)
scaffold0015 (54-158)||(207710-207814)


Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 22 - 412
Target Start/End: Original strand, 49333051 - 49333440
Alignment:
Q  22 acttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccacc 121  Q
    ||||||||||||||||||| |||||||||||||| ||| |||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  49333051 acttggtctcataactctactgttgtttaccattctggccatctcggttagtttttcaccttaaacgtctaaggtgaatcaactttatgggtggtccacc 49333150  T
Q  122 atagaccttattaaatcttttatttttaaccgtttgannnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcaca 221  Q
    |||||||||||||| ||||||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  49333151 atagaccttattaa-tcttttatttttaaccgtttgatttttttttaaatgtagatcgttggatcatgaaggagtctattgtagcttataatgaagcaca 49333249  T
Q  222 aacacctaattttttccctccatctcttccctatctttcttcttcatccccaaataaaactccctttcatctttattcatcatcttggnnnnnnnnnnnn 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
T  49333250 aacacctaattttttccctccatctcttccctatctttcttcttcatccccaaataaaactccctttcatctttattcatcatcttggaaagaaaaaaaa 49333349  T
Q  322 nnnnnnnnnnnnnctctcattcattatttttaattaattcatctttaaatcactaataaactctcagatcaatctcattaattattgatga 412  Q
                 |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  49333350 caagaaaaaaaaactctaattcattatttttaattaattcatctttaaatcactaataaactctcaaatcaatctcattaattgttgatga 49333440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 46 - 246
Target Start/End: Original strand, 23559911 - 23560113
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    |||||| ||||||||| || | |||||||||| |||||||  ||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  23559911 gtttactattttggtcctctccgttagtttttaaccttaattgtctaagatgaaccaactttataggtggtccaccatagatcttattaaatcttttatt 23560010  T
Q  146 tttaaccgtttga--nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaattttttccctcca 243  Q
    |||||  ||||||           ||||| ||| |||||||||| |||| | | ||||||||||||||||||| ||||||||||||||||||  ||||||    
T  23560011 tttaattgtttgatctttttttttaaatggagaccgttggatcaagaagagatatattgtagcttataatgaaccacaaacacctaatttttctcctcca 23560110  T
Q  244 tct 246  Q
    |||    
T  23560111 tct 23560113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 24 - 236
Target Start/End: Complemental strand, 12062430 - 12062216
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||| ||| ||||| ||| ||||||| |||||||||||  |  ||||||||| |||||||| |||||||||||||||||||||| |||| ||||||||    
T  12062430 ttggtcccattactcttttgctgtttactattttggtcatttccattagtttttaaccttaaatgtctaaggtgaaccaactttataggtgatccaccat 12062331  T
Q  124 agaccttattaaatcttttatttttaaccgtttga--nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcaca 221  Q
    | ||||||||||||||| ||||||||||| |||||           ||||| ||| |||||||||| | || | |||| ||||| |||||||||| ||||    
T  12062330 ataccttattaaatcttgtatttttaaccatttgatttttttcttcaaatggagaccgttggatcaaggagagatctactgtaggttataatgaaccaca 12062231  T
Q  222 aacacctaatttttt 236  Q
    |||||||||||||||    
T  12062230 aacacctaatttttt 12062216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 25 - 237
Target Start/End: Complemental strand, 35174427 - 35174215
Alignment:
Q  25 tggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccata 124  Q
    ||||| |||||||||  | | |||||| |||||||||||  |||||| ||||| |||||||| |||||||||||||||||||||| ||| |||||| | |    
T  35174427 tggtcccataactcttctatcgtttactattttggtcatttctgttaatttttaaccttaaaagtctaaggtgaaccaactttataggtagtccacgaga 35174328  T
Q  125 gaccttattaaatcttttatttttaaccgtttga-nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaa 223  Q
    ||||||||||||| ||||||||||||| ||||||          ||||| ||| | |||||||||| |||| |||||||||| ||||||| || ||||||    
T  35174327 gaccttattaaat-ttttatttttaacggtttgatctttgttttaaatggagacccttggatcatggagggatctattgtagtttataataaaccacaaa 35174229  T
Q  224 cacctaattttttc 237  Q
    ||||||||||||||    
T  35174228 cacctaattttttc 35174215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 66 - 236
Target Start/End: Complemental strand, 48867434 - 48867267
Alignment:
Q  66 ctgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttgannnnnnn 165  Q
    |||||||||||| |||||||| |||||||||||||||||||| | ||||||| ||||||||| ||||||||  || || |||||||| ||| |           
T  48867434 ctgttagtttttaaccttaaatgtctaaggtgaaccaactttgtaggtggtctaccatagactttattaaaatttgtaattttaaccatttta---tcta 48867338  T
Q  166 nnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaatttttt 236  Q
      ||||| |||| |||| |||||| ||||||||||||||||||||||| || ||||| |||||||||||||    
T  48867337 ttaaatgaagattgttgaatcatggaggggtctattgtagcttataataaaccacaaccacctaatttttt 48867267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 49 - 283
Target Start/End: Original strand, 51400310 - 51400545
Alignment:
Q  49 taccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttattttt 148  Q
    ||||||||||||| |  | ||| |||||| || ||||| |||| ||||||| ||| ||||| |||| ||| ||||| | |||| ||||||||||||||||    
T  51400310 taccattttggtcctttccgtttgtttttaacattaaatgtcttaggtgaatcaattttattggtgatcctccataaatcttactaaatcttttattttt 51400409  T
Q  149 aaccgtttgannnnnnnnn-aaatgtagatcgttggatcatgaagggg-tctattgtagcttataatgaagcacaaacacctaattttttccctccatc- 245  Q
    ||| ||||||          ||||| ||| |||||||||||| ||||| ||||||||| |||| ||| || ||||||||||||||||||| ||||||||     
T  51400410 aactgtttgatctttgttttaaatggagaccgttggatcatggagggggtctattgtaacttacaataaaccacaaacacctaatttttt-cctccatct 51400508  T
Q  246 tcttccctatctttcttcttcatccccaaataaaactc 283  Q
    |||||| |||  ||||||||||||||||||||||||||    
T  51400509 tcttccatat-gttcttcttcatccccaaataaaactc 51400545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 43346493 - 43346365
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    ||||||||||||||||  ||| ||||| ||||||||||||    ||  |||||| ||| |||| |||||||||| |||||| |||| |||||||||||||    
T  43346493 ttggtctcataactcttctgtcgtttatcattttggtcattttcgtctgtttttaaccctaaatgtctaaggtggaccaacattataggtggtccaccat 43346394  T
Q  124 agaccttattaaatcttttatttttaacc 152  Q
    |||||||| ||||| ||||| ||||||||    
T  43346393 agaccttactaaattttttaattttaacc 43346365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 21127995 - 21128129
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||| |||||||||  ||  ||||||||||||||||||  | ||  |||||| ||| |||| |||||||||| |||||| |||| |||||||||||||    
T  21127995 ttggtcccataactcttctgccgtttaccattttggtcatttccgtctgtttttaaccctaaatgtctaaggtggaccaacattataggtggtccaccat 21128094  T
Q  124 agaccttattaaatcttttatttttaaccgtttga 158  Q
    ||||||||  || | ||||| |||||||| |||||    
T  21128095 agaccttacaaagttttttaattttaaccatttga 21128129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 26798930 - 26798818
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    |||||||||||||||| || | |||||||||| |||||||| |  ||| | ||||||||||| | |||||||||||||| || ||||||||   |||| |    
T  26798930 gtttaccattttggtcctctccgttagtttttaaccttaaatggttaaagcgaaccaactttgtaggtggtccaccatacactttattaaaaaatttaat 26798831  T
Q  146 tttaaccgtttga 158  Q
    |||||| ||||||    
T  26798830 tttaactgtttga 26798818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 158
Target Start/End: Original strand, 39133117 - 39133221
Alignment:
Q  54 ttttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccg 153  Q
    |||||||| || |||||||||||| || | ||| |||||||||||||||  ||||  ||||||||||||||  ||||| ||||| ||||| ||||||||     
T  39133117 ttttggtcctctctgttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccatatgccttactaaattttttaattttaacca 39133216  T
Q  154 tttga 158  Q
    |||||    
T  39133217 tttga 39133221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 11219522 - 11219634
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    |||||| |||||||||||| | ||||| |||| || | |||  ||||||||||||||  ||||  |||||| ||||||||| | |||||||| ||||| |    
T  11219522 gtttactattttggtcatctccgttagattttaacatcaaaattctaaggtgaaccatatttaaaggtggttcaccatagatcgtattaaattttttaat 11219621  T
Q  146 tttaaccgtttga 158  Q
    ||||||| |||||    
T  11219622 tttaaccatttga 11219634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 17350118 - 17350014
Alignment:
Q  54 ttttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccg 153  Q
    |||||||| || | |||||||||| || | ||| |||||||||||||||  ||||  ||||||||||||||  ||||| ||||| ||||| ||||||||     
T  17350118 ttttggtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccatatgccttactaaattttttaattttaacca 17350019  T
Q  154 tttga 158  Q
    |||||    
T  17350018 tttga 17350014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 158
Target Start/End: Original strand, 32979188 - 32979292
Alignment:
Q  54 ttttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccg 153  Q
    |||||||| || | |||||||||| || ||||| | ||||||||||| |  ||||  |||||| ||||||||||| |||||||| ||||| ||||||||     
T  32979188 ttttggtcctctccgttagtttttaacattaaaagactaaggtgaactatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacca 32979287  T
Q  154 tttga 158  Q
    |||||    
T  32979288 tttga 32979292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 42685013 - 42685083
Alignment:
Q  88 gtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    ||||| ||||||||||  ||| | ||||||||||||| |||||||||||| ||||| ||| ||||||||||    
T  42685013 gtctatggtgaaccaagcttaagagtggtccaccataaaccttattaaattttttaatttaaaccgtttga 42685083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 48254877 - 48254807
Alignment:
Q  82 ttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaacc 152  Q
    ||||| |||||||||| |||||| |||| |||||||||||||| |||||| ||| | ||||| ||||||||    
T  48254877 ttaaatgtctaaggtggaccaacattataggtggtccaccataaaccttactaagttttttaattttaacc 48254807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 53808389 - 53808522
Alignment:
Q  25 tggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccata 124  Q
    ||||| ||||| |||  ||| |||||| |||||||||||| |  ||||||||| || | |||  ||||||||||| ||  | ||  ||||||||||||||    
T  53808389 tggtcccataaatcttatgtcgtttactattttggtcatctccattagtttttaacatcaaatttctaaggtgaatcatatctaaaggtggtccaccata 53808488  T
Q  125 gaccttattaaatcttttatttttaaccgtttga 158  Q
     |||||||||||| ||| | |||||||| |||||    
T  53808489 aaccttattaaatttttaaattttaaccctttga 53808522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 34903010 - 34902906
Alignment:
Q  54 ttttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccg 153  Q
    ||||||||||| | |||||||||| ||   ||| |||||| ||||||||  ||||  |||||| |||||| ||||||| ||||| ||||| ||||||||     
T  34903010 ttttggtcatctccgttagtttttaacaccaaatgtctaaagtgaaccatatttaaaggtggtgcaccatggaccttagtaaattttttaattttaacct 34902911  T
Q  154 tttga 158  Q
    |||||    
T  34902910 tttga 34902906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 37415157 - 37415199
Alignment:
Q  113 tggtccaccatagaccttattaaatcttttatttttaaccgtt 155  Q
    |||||||||||||| |||||||| ||||||| |||||||||||    
T  37415157 tggtccaccatagatcttattaattcttttaattttaaccgtt 37415199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 45421229 - 45421287
Alignment:
Q  74 ttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttat 132  Q
    |||| ||| |||| ||||||| ||||||||| |||  ||||||||||||||||||||||    
T  45421229 ttttaaccataaatgtctaagatgaaccaacattagaggtggtccaccatagaccttat 45421287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 158
Target Start/End: Original strand, 47765538 - 47765642
Alignment:
Q  54 ttttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccg 153  Q
    ||||||||||| | |||||||||| || | |||  ||| ||||||||||   |||  | ||||||||||||||||||||| ||| ||| | ||||||||     
T  47765538 ttttggtcatctccgttagtttttaacatcaaatatcttaggtgaaccattgttaaagatggtccaccatagaccttattgaatttttaaattttaacct 47765637  T
Q  154 tttga 158  Q
    |||||    
T  47765638 tttga 47765642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 24 - 308
Target Start/End: Complemental strand, 13930721 - 13930435
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||| ||||| |||  ||| |||||||||||||||| |  | ||| |||||| |||||||| |||||  ||||| |||||||||  |||||| |||||    
T  13930721 ttggtcccataagtcttatgtcgtttaccattttggtcctttccgtttgtttttaaccttaaatgtctattgtgaaacaactttatatgtggtctaccat 13930622  T
Q  124 agaccttattaaatcttttatttttaaccgtttgannnnnnnnnaaa-tgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaa 222  Q
    ||||||||||||||| | |||||||||||||||||         ||| || | | |||||||||||| ||||||||||||||||||||| |||| |||||    
T  13930621 agaccttattaaatcatatatttttaaccgtttgatcatttcttaaaatgaaaaccgttggatcatggaggggtctattgtagcttatattgaaccacaa 13930522  T
Q  223 acacctaattttttccctccatc-tcttccctatctttcttcttcatccccaaataaaactccctttcatctttattcatcatcttg 308  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | ||||||| ||||||||||||||    
T  13930521 acacctaattttttccctccatcttcttccctatcattcttcttcatccccaaataaaactctcattcatctatattcatcatcttg 13930435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 24 - 308
Target Start/End: Complemental strand, 14071249 - 14070964
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||| ||||| |||  ||| |||||||||||||||| |  | ||| |||||| |||||||| |||||  ||||| ||| |||||  |||||| |||||    
T  14071249 ttggtcccataagtcttctgtcgtttaccattttggtcctttccgtttgtttttaaccttaaatgtctattgtgaaacaa-tttatatgtggtctaccat 14071151  T
Q  124 agaccttattaaatcttttatttttaaccgtttgannnnnnnnnaaa-tgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaa 222  Q
    ||||||||||||||| | |||||||||||||||||         ||| || | | |||||||||||| ||||||||||||||||||||| |||| |||||    
T  14071150 agaccttattaaatcatatatttttaaccgtttgatcatttcttaaaatgaaaaccgttggatcatggaggggtctattgtagcttatattgaaccacaa 14071051  T
Q  223 acacctaattttttccctccatc-tcttccctatctttcttcttcatccccaaataaaactccctttcatctttattcatcatcttg 308  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | ||||||| ||||||||||||||    
T  14071050 acacctaattttttccctccatcttcttccctatcattcttcttcatccccaaataaaactctcattcatctatattcatcatcttg 14070964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 46 - 271
Target Start/End: Complemental strand, 51726868 - 51726640
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttat- 144  Q
    |||||| ||||| ||| |||| |||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  51726868 gtttactattttagtcctcaccgttagtttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaaatcttttatt 51726769  T
Q  145 ttttaaccgtttga-nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaa-ttttttccctcc 242  Q
    ||||||||||||||          ||||  ||| |||||||||| | || | |||||| |||||||||| ||| ||| ||||||||| ||||||  ||||    
T  51726768 ttttaaccgtttgatactctttttaaatagagaccgttggatcaaggagagatctattatagcttataaagaaccacgaacacctaatttttttttctcc 51726669  T
Q  243 atc-tcttccctatctttcttcttcatccc 271  Q
    ||| ||||||||||  ||||||||||||||    
T  51726668 atcttcttccctat-gttcttcttcatccc 51726640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 14169689 - 14169822
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||| ||||| ||| |||| |||||| ||||||||| |  |||||||||||| |||||||| |||||||||||||||||||||| ||||| |||||||    
T  14169689 ttggtcccataaatcttttgtcgtttactattttggtcttatctgttagtttttaaccttaaatgtctaaggtgaaccaactttataggtggcccaccat 14169788  T
Q  124 agaccttattaaatcttttatttttaaccgtttga 158  Q
    |||||||||| |||||||| |||||||| ||||||    
T  14169789 agaccttattgaatctttt-tttttaacggtttga 14169822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 21277109 - 21277188
Alignment:
Q  69 ttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttattttt 148  Q
    ||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21277109 ttagtttttgaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaaatcttttattttt 21277188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 196 - 308
Target Start/End: Original strand, 21277291 - 21277403
Alignment:
Q  196 tctattgtagcttataatgaagcacaaacacctaattttttccctccatc-tcttccctatctttcttcttcatccccaaataaaactccctttcatctt 294  Q
    ||||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||||| ||| | | || |||    
T  21277291 tctattgtaacttataatgaaccacaaacacctaatttttt-cctccatcttcttccctattgttcttcttcatccccaaataaatctctcatacaactt 21277389  T
Q  295 tattcatcatcttg 308  Q
    ||||||||||||||    
T  21277390 tattcatcatcttg 21277403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 8092712 - 8092781
Alignment:
Q  68 gttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaat 137  Q
    |||||| ||| ||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8092712 gttagtatttaaccttaaatatctaaggtgaaccaactttataggtggtccaccatagaccttattaaat 8092781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 40811403 - 40811456
Alignment:
Q  105 tttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40811403 tttataggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 40811456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 94 - 238
Target Start/End: Original strand, 22167913 - 22168059
Alignment:
Q  94 ggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttgannnnnnnnn--aaatgtagatcgttggatcatgaa 191  Q
    ||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||           ||||| ||| | ||||||||   |    
T  22167913 ggtgaacaaactttatagatggtccaccatagaccttattaaatcttttatttttaacggtttgatctttttttttaaatggagaccattggatcaatga 22168012  T
Q  192 ggggtctattgtagcttataatgaagcacaaacacctaattttttcc 238  Q
    | | |||||||||| |||||||||| |||||||||||||| ||||||    
T  22168013 gagatctattgtagtttataatgaaccacaaacacctaatattttcc 22168059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 38281047 - 38281115
Alignment:
Q  168 aaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaatttttt 236  Q
    ||||| |||| ||||||||||| |||| |||||||||| |||||||||| ||||| |||||||||||||    
T  38281047 aaatgaagattgttggatcatggagggatctattgtagattataatgaaccacaaccacctaatttttt 38281115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 9633889 - 9633979
Alignment:
Q  68 gttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    |||||||||| || | ||| |||||||||||||||  ||||  ||||||||||||||||||||||||||| ||| | |||| ||| |||||    
T  9633889 gttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagaccttattaaatttttaaattttgaccctttga 9633979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 55 - 137
Target Start/End: Original strand, 44977322 - 44977404
Alignment:
Q  55 tttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaat 137  Q
    |||||||||| |||||||||||| || | ||| |||||||||||||||  ||||  ||||||||||| || ||||||||||||    
T  44977322 tttggtcatctctgttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccgtaaaccttattaaat 44977404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 49141520 - 49141414
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    |||||||||||| |||||| | |||||||||| || | ||| |||||||||||||||  ||||  | || ||||||||||||||||| || || |||| |    
T  49141520 gtttaccattttagtcatctccgttagtttttaacatcaaatgtctaaggtgaaccatatttaaagttgttccaccatagaccttataaattcatttaat 49141421  T
Q  146 tttaacc 152  Q
    |||||||    
T  49141420 tttaacc 49141414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 158
Target Start/End: Original strand, 50678463 - 50678566
Alignment:
Q  54 ttttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccg 153  Q
    |||||||| || |||||||||||| || | |||  ||||||||||||||  ||||  |||||| ||||||||||| |||||||| ||||| ||||||||     
T  50678463 ttttggtcctctctgttagtttttaacatcaaaactctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaat-ttttaattttaacca 50678561  T
Q  154 tttga 158  Q
    |||||    
T  50678562 tttga 50678566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 14764299 - 14764433
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||||||||| |||  ||| ||||||  |||| |||||| |||||||||||| || ||||| || |||||||||||   ||||  |||||||||||||    
T  14764299 ttggtctcataagtcttctgtcgtttactgttttagtcatctctgttagtttttaacattaaatgtttaaggtgaaccttatttaaaggtggtccaccat 14764398  T
Q  124 agaccttattaaatcttttatttttaaccgtttga 158  Q
    |  || || ||||| ||||  |||||||| |||||    
T  14764399 acgccatactaaatttttttattttaaccatttga 14764433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 8562741 - 8562700
Alignment:
Q  340 attcattatttttaattaattcatctttaaatcactaataaa 381  Q
    ||||||||||||||||||||| || |||||||||||||||||    
T  8562741 attcattatttttaattaattaatttttaaatcactaataaa 8562700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 35943431 - 35943367
Alignment:
Q  83 taaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttt 147  Q
    |||| ||||| |||| |||||| ||| | ||| |||||||||||||||||||||| |||||||||    
T  35943431 taaatgtctatggtggaccaaccttaagagtgatccaccatagaccttattaaattttttatttt 35943367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 9415738 - 9415827
Alignment:
Q  68 gttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    |||||||||| ||| ||||  |||||||||||||| | | || |||||||||||||  ||||||||| || ||||| |||||||| |||||    
T  9415738 gttagtttttaaccataaatatctaaggtgaaccagcatcataggtggtccaccatgcaccttattagat-ttttaattttaaccctttga 9415827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 13642450 - 13642408
Alignment:
Q  180 ttggatcatgaaggggtctattgtagcttataatgaagcacaa 222  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||    
T  13642450 ttggatcattaagggatctattgtagcttataatgaaccacaa 13642408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 21277433 - 21277478
Alignment:
Q  335 ctctcattcattatttttaattaattcatctttaaatcactaataaa 381  Q
    ||||||||||||||||||||| |||| ||||||||| ||||||||||    
T  21277433 ctctcattcattatttttaatcaattaatctttaaa-cactaataaa 21277478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 280
Target Start/End: Original strand, 48571920 - 48571970
Alignment:
Q  231 ttttttccctccatct-cttccctatctttcttcttcatccccaaataaaa 280  Q
    |||||||||||||||| ||||| |||  |||||||||||||||||||||||    
T  48571920 ttttttccctccatcttcttccttatagttcttcttcatccccaaataaaa 48571970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 48574009 - 48574051
Alignment:
Q  335 ctctcattcattatttttaattaattcatctttaaatcactaataaa 381  Q
    |||||||||||||||||||||||    ||||||||||||||||||||    
T  48574009 ctctcattcattatttttaatta----atctttaaatcactaataaa 48574051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 158
Target Start/End: Original strand, 26802055 - 26802147
Alignment:
Q  66 ctgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    |||||| ||||| | |||||| ||||||||||||||||| ||| | || |||||| ||||| | ||||||   ||||| ||| ||||||||||    
T  26802055 ctgttactttttaatcttaaatgtctaaggtgaaccaaccttaagagttgtccactatagatcatattaatcattttaatttaaaccgtttga 26802147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 30551605 - 30551501
Alignment:
Q  54 ttttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccg 153  Q
    ||||||||||| | ||||||||||  | | ||| |||||| ||||||||  || |  |||||| |||||| ||||||| ||||| ||||| ||||||||     
T  30551605 ttttggtcatctccgttagtttttagcatcaaatgtctaaagtgaaccatattaaaaggtggtgcaccatggaccttagtaaattttttaattttaacct 30551506  T
Q  154 tttga 158  Q
    |||||    
T  30551505 tttga 30551501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 45 - 302
Target Start/End: Complemental strand, 25154961 - 25154700
Alignment:
Q  45 tgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttat 144  Q
    |||||| ||||||||||||| | ||| |||||| |||||||| ||||||||||||||||||||||  ||||||||||||| | |||||||||||||||||    
T  25154961 tgtttatcattttggtcatctccgtttgtttttaaccttaaatgtctaaggtgaaccaactttataagtggtccaccataaaacttattaaatcttttat 25154862  T
Q  145 ttttaaccgtttga----nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaattttttccct 240  Q
    ||||||||||||||             ||||| ||| |||||||||| |||||| |||| |||||||||||||||| | || |||||||||||||| |||    
T  25154861 ttttaaccgtttgatcgtttttttttaaaatgaagaccgttggatca-gaagggatctactgtagcttataatgaaccccacacacctaatttttttcct 25154763  T
Q  241 ccatc-tcttccctatctttcttcttcatccccaaataaaactccctttcatctttattcatc 302  Q
    ||||| |||||| || | |||||| | ||||||||||||||||| | |||||||||| |||||    
T  25154762 ccatcttcttccttaccattcttcgttatccccaaataaaactctcattcatctttaatcatc 25154700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 46 - 255
Target Start/End: Complemental strand, 46458737 - 46458525
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    |||||||||||||||| || | ||| |||||| |||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||   || |    
T  46458737 gtttaccattttggtcctctccgtttgtttttaaccttaaatgtctaaggtgaaccaactttataggtagtccaccatagaccttattaaatcacatagt 46458638  T
Q  146 tttaaccgtttga---nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaattttttccctcc 242  Q
    |||||||||||||            |||||| |||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||||||||| |||||    
T  46458637 tttaaccgtttgatctttttttgttaaatgtggatcgttggatcatgaagagatctattgtaccttataatgaaccacaaacacctaatttttt-cctcc 46458539  T
Q  243 atc-tcttccctat 255  Q
    ||| ||||||||||    
T  46458538 atcttcttccctat 46458525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 25 - 237
Target Start/End: Original strand, 10256194 - 10256407
Alignment:
Q  25 tggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccata 124  Q
    |||||||||||||||  | | |||||  |||||||||||  ||  || ||||| |||||||| |||||||||||||||||||||| ||| ||||||||||    
T  10256194 tggtctcataactcttctatcgtttagtattttggtcatttctagtaatttttaaccttaaaagtctaaggtgaaccaactttataggtagtccaccata 10256293  T
Q  125 gaccttattaaatcttttatttttaaccgtttga-nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaa 223  Q
    ||||||||||||||||||||||||||| ||| ||          ||||| |||  ||||||||||| |||| |||||| ||| ||||||| || ||||||    
T  10256294 gaccttattaaatcttttatttttaacggttcgatctttattttaaatggagactgttggatcatggagggatctattatagtttataataaaccacaaa 10256393  T
Q  224 cacctaattttttc 237  Q
    ||||||||||||||    
T  10256394 cacctaattttttc 10256407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 68 - 236
Target Start/End: Complemental strand, 132001 - 131832
Alignment:
Q  68 gttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga-nnnnnnnn 166  Q
    |||||||||| |||||||| |||||||||||||||||||| |  |||| | |||||| || ||||||||| ||||| ||||||||||||||             
T  132001 gttagtttttaaccttaaatgtctaaggtgaaccaactttgtaagtggactaccataaactttattaaattttttaattttaaccgtttgatcttttctt 131902  T
Q  167 naaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaatttttt 236  Q
     ||||| |||| ||||||||||| || | ||||||||||||||||||||| ||||| |||||||||||||    
T  131901 taaatgaagattgttggatcatggagagatctattgtagcttataatgaaccacaaccacctaatttttt 131832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 26406199 - 26406329
Alignment:
Q  28 tctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagac 127  Q
    ||||||||||||  ||  ||||| ||||||||||||| | |||| ||||| |||||||| |||||||||||||||||||| | ||||||||||||||||     
T  26406199 tctcataactcttctgccgtttaacattttggtcatctccgttattttttaaccttaaatgtctaaggtgaaccaactttgtaggtggtccaccatagat 26406298  T
Q  128 cttattaaatcttttatttttaaccgtttga 158  Q
     |||| || || |||| |||||||| |||||    
T  26406299 attataaattcatttaattttaaccctttga 26406329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 255
Target Start/End: Original strand, 24872060 - 24872292
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||||||||| ||| ||   ||||||||||||| || |  | ||| |||||| |||||||| ||||| |||||| ||||||||| | || ||||||||    
T  24872060 ttggtctcataagtctttttccgtttaccattttgatcctttccgtttgtttttaaccttaaatgtctatggtgaatcaactttatagatgatccaccat 24872159  T
Q  124 agaccttattaaatcttttatttttaaccgtttga-nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaa 222  Q
    | |||| ||||| ||||| |||||||||| |||||          ||||| ||| ||||| |||||| |||| |||||  || |||||||| || |||||    
T  24872160 aaacctcattaagtctttcatttttaaccttttgatcttttttataaatggagaccgttgaatcatggagggatctatcataacttataataaaccacaa 24872259  T
Q  223 acacctaattttttccctccatc-tcttccctat 255  Q
    |||||||| ||||| |||||||| ||||||||||    
T  24872260 acacctaaattttt-cctccatcttcttccctat 24872292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 66 - 158
Target Start/End: Complemental strand, 33459547 - 33459455
Alignment:
Q  66 ctgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    |||||||||||| |||||||  |||||||||||||||||||| | ||||||| ||||| ||| ||||||||  || || ||||||||||||||    
T  33459547 ctgttagtttttaaccttaactgtctaaggtgaaccaactttgtaggtggtctaccatggactttattaaaatttgtaattttaaccgtttga 33459455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 35484312 - 35484223
Alignment:
Q  68 gttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    |||||||||| ||| |||| ||||||||||||||||| |||| |||||||||||||||| |||| || || ||||| |||||||| |||||    
T  35484312 gttagtttttaaccctaaatgtctaaggtgaaccaacattataggtggtccaccatagatcttaatagat-ttttaattttaaccctttga 35484223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 152
Target Start/End: Original strand, 45719685 - 45719813
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    ||||||||||||||||  |||||||||||||||||||  |    || ||||||| ||  |||| |||||||||| |||||| |||| |||| ||||||||    
T  45719685 ttggtctcataactcttctgttgtttaccattttggtttttttcgtcagtttttaacactaaatgtctaaggtggaccaacattataggtgctccaccat 45719784  T
Q  124 agaccttattaaatcttttatttttaacc 152  Q
    | |||||| ||| | ||||| ||||||||    
T  45719785 aaaccttactaagttttttaattttaacc 45719813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 142
Target Start/End: Complemental strand, 27899253 - 27899142
Alignment:
Q  31 cataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagacctt 130  Q
    ||||| ||| |||| |||||| ||||||||| |  | |||||||||| ||||||||  ||||||||||||||||||||| |  |  |||||||||| |||    
T  27899253 cataaatcttttgtcgtttactattttggtcttatccgttagtttttaaccttaaatatctaaggtgaaccaactttatagacgacccaccatagatctt 27899154  T
Q  131 attaaatctttt 142  Q
    ||| ||||||||    
T  27899153 attgaatctttt 27899142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 28325185 - 28325276
Alignment:
Q  67 tgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    ||||||||||| | |||||| |||||||||| ||||||||| | ||||||| ||||||||| ||||||||  ||| | ||| ||||||||||    
T  28325185 tgttagtttttaatcttaaatgtctaaggtggaccaactttgtaggtggtctaccatagactttattaaaattttaaatttaaaccgtttga 28325276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 14109095 - 14109005
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaa 136  Q
    ||||||| |||| ||| || | |||||||||| || | ||| |||||||||||||||  ||||  ||||||||||||||||||||||||||    
T  14109095 gtttaccgttttagtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagaccttattaaa 14109005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 14419052 - 14418962
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaa 136  Q
    ||||||| |||| ||| || | |||||||||| || | ||| |||||||||||||||  ||||  ||||||||||||||||||||||||||    
T  14419052 gtttaccgttttagtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagaccttattaaa 14418962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 25533332 - 25533383
Alignment:
Q  95 gtgaaccaactttatgggtggtccaccatagaccttattaaatcttttattt 146  Q
    |||||| ||||||| ||||||||||| |||||||||||||||||||| ||||    
T  25533332 gtgaactaactttaagggtggtccactatagaccttattaaatctttaattt 25533383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 44113543 - 44113632
Alignment:
Q  68 gttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    |||||||||| ||| ||||  |||||||||||||| | | || |||||||||||||  ||||||||| || ||||| |||||||| |||||    
T  44113543 gttagtttttaaccataaatatctaaggtgaaccagcatcataggtggtccaccatgcaccttattagat-ttttaattttaaccctttga 44113632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 4167586 - 4167655
Alignment:
Q  89 tctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    ||||||||||||||  ||||  |||||||||||||||| |||||||||| ||| | ||| |||| |||||    
T  4167586 tctaaggtgaaccatgtttaaaggtggtccaccatagatcttattaaatttttaaatttcaaccttttga 4167655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 158
Target Start/End: Complemental strand, 41516357 - 41516256
Alignment:
Q  57 tggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgttt 156  Q
    |||||||  |||||||||||| | |||||| |||||||||| || |||||| | |||| |  ||||||||| ||||||||| ||| | ||| || |||||    
T  41516357 tggtcatttctgttagtttttaatcttaaatgtctaaggtggactaactttgtaggtgttataccatagactttattaaatttttaaatttaaatcgttt 41516258  T
Q  157 ga 158  Q
    ||    
T  41516257 ga 41516256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 8661800 - 8661872
Alignment:
Q  71 agtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatctttta 143  Q
    ||||||| ||| |||| |||||||||||| |||  || | |||||||||||||| |||||| ||||| |||||    
T  8661800 agtttttaaccctaaatgtctaaggtgaatcaaaattgtaggtggtccaccatataccttaataaatttttta 8661872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 10957110 - 10957070
Alignment:
Q  112 gtggtccaccatagaccttattaaatcttttatttttaacc 152  Q
    ||||||||||||||| |||||||| ||||||| ||||||||    
T  10957110 gtggtccaccatagatcttattaattcttttaattttaacc 10957070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 6e-47; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 24 - 302
Target Start/End: Original strand, 40058088 - 40058367
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    ||||||||||||||||  ||  ||||||||||||||||||| | |||||||||| | |||||| ||||||||||||||||||||||  || |||||||||    
T  40058088 ttggtctcataactcttctgccgtttaccattttggtcatctccgttagtttttaatcttaaatgtctaaggtgaaccaactttataagtagtccaccat 40058187  T
Q  124 agaccttattaaatcttttatttttaaccgtttga--nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcaca 221  Q
    |||||||||||||||||||||||||||| ||||||           ||||| ||| |||||||||||  |||  ||||||||||||| |||| || || |    
T  40058188 agaccttattaaatcttttatttttaactgtttgatcttttttttaaaatggagaccgttggatcatagaggaatctattgtagcttgtaattaaccaga 40058287  T
Q  222 aacacctaattttttccctccatc-tcttccctatctttcttcttcatccccaaataaaactccctttcatctttattcatc 302  Q
    |||| ||||||||||  ||||||| |||| |||||  |||||||||||||||||  ||||||| | ||||||||||||||||    
T  40058288 aacaactaatttttt-tctccatcttctttcctat-gttcttcttcatccccaataaaaactctcattcatctttattcatc 40058367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 46 - 307
Target Start/End: Complemental strand, 19525312 - 19525050
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    |||||||||||||||| || | ||| |||||| ||||||||  |||| ||||||||||||||||  |||||||||||||||||||||||||||   ||||    
T  19525312 gtttaccattttggtcctctccgtttgtttttaaccttaaatttctatggtgaaccaactttatatgtggtccaccatagaccttattaaatcacatatt 19525213  T
Q  146 tttaaccgtttgannnnnnnnn-aaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaa-ttttttccctcca 243  Q
    |||||| ||||||          ||||| ||| |||||||||||| |||| || |||||||||||| |||||   || |||| ||| |||||| ||||||    
T  19525212 tttaactgtttgatcttttttttaaatggagaccgttggatcatggagggatcaattgtagcttatgatgaa--ccagacacataattttttttcctcca 19525115  T
Q  244 tc-tcttccctatctttcttcttcatccccaaataaaactccctttcatctttattcatcatctt 307  Q
    || ||||||| ||| |||||||||||||||||||||||||| | |||||||||||||||||||||    
T  19525114 tcttcttccccatcattcttcttcatccccaaataaaactctcattcatctttattcatcatctt 19525050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 237
Target Start/End: Original strand, 32734201 - 32734415
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||| |||||||||  ||| |||||| |||||||||||  | |||||||||| | ||||||  |||||||||||| | ||| || | | |||||||||    
T  32734201 ttggtcccataactcttctgtcgtttactattttggtcatttccgttagtttttaatcttaaatatctaaggtgaacaaccttaatagatagtccaccat 32734300  T
Q  124 agaccttattaaatcttttatttttaaccgtttga-nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaa 222  Q
    |||||||||||||||||||||||||||| ||||||          ||||| ||| |||||||||||| |||| |||||||||||||||||| || |||||    
T  32734301 agaccttattaaatcttttatttttaacagtttgatatttttttaaaatggagaccgttggatcatggagggatctattgtagcttataataaaccacaa 32734400  T
Q  223 acacctaattttttc 237  Q
    |||||||||||||||    
T  32734401 acacctaattttttc 32734415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 53 - 238
Target Start/End: Complemental strand, 2167531 - 2167345
Alignment:
Q  53 attttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaacc 152  Q
    ||||||||| || |||||||||||| |||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||    
T  2167531 attttggtc-tctctgttagtttttaaccttaaatgtctaaggtgaaccaactttatagatggtccaccatagaccttattaaatcttttattattaacc 2167433  T
Q  153 gtttga--nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaattttttcc 238  Q
    ||||||           ||||| ||| | ||||||||   || | |||||||||| |||||||||| |||||||||||||||||||||    
T  2167432 gtttgatttttttttttaaatggagaccattggatcaatgagagatctattgtagtttataatgaaccacaaacacctaattttttcc 2167345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 24 - 304
Target Start/End: Original strand, 5383012 - 5383288
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||| ||||| ||| | || |||||| |||||| || || | |||||||||| |||||||| |||||||||||| ||||||||| |||||||||||||    
T  5383012 ttggtcccataaatctttggtcgtttactattttgatcctctccgttagtttttaaccttaaatgtctaaggtgaatcaactttataggtggtccaccat 5383111  T
Q  124 agaccttattaaatcttttatttttaaccgtttga--nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcaca 221  Q
    |||||||||||||||||||||| |||  |||||||           ||||| ||||| |  ||||||| |||| ||||||||||||||||| ||| ||||    
T  5383112 agaccttattaaatcttttattcttagtcgtttgaactttttttttaaatgaagatcat--gatcatggagggatctattgtagcttataacgaaccaca 5383209  T
Q  222 aacacctaattttttccctccatc-tcttccctatctttcttcttcatccccaaataaaactccctttcatctttattcatcat 304  Q
    |||||| |||||||| |||||||| |||| |||||  || |||||||| ||||| |||||    || |||||||||||||||||    
T  5383210 aacaccaaatttttt-cctccatcttctttcctat-attattcttcatacccaattaaaa---actctcatctttattcatcat 5383288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 46 - 236
Target Start/End: Original strand, 38471381 - 38471573
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttat- 144  Q
    |||||| ||||||||  || |||||| ||||| |||||||| || ||||||||||||||||||| ||||||| ||||||||| ||||||  | |||| |     
T  38471381 gtttactattttggttctctctgttaatttttaaccttaaatgtttaaggtgaaccaactttataggtggtctaccatagactttattatttatttttta 38471480  T
Q  145 ttttaaccgtttga-nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaatttttt 236  Q
    ||||||||||||||          ||||| |||| ||||||||||  |||| ||||||||||||||||||||| ||||| |||||||||||||    
T  38471481 ttttaaccgtttgatctttttttaaaatgaagattgttggatcatagagggatctattgtagcttataatgaaccacaaccacctaatttttt 38471573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 28 - 239
Target Start/End: Original strand, 12947986 - 12948198
Alignment:
Q  28 tctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagac 127  Q
    |||||||| |||  ||| ||||||||||| |||| |  | |||  ||||| ||||||||  |||| | |||| ||||||||| |||| ||||||||| ||    
T  12947986 tctcataagtcttatgtcgtttaccatttcggtcctttccgtttatttttaaccttaaatatctatgatgaatcaactttataggtgatccaccataaac 12948085  T
Q  128 cttattaaatcttttatttttaaccgtttga-nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacac 226  Q
    |||||||||||||| |||||||||  |||||          ||||| ||| |||||||||||| |||| ||||||||| |||||||| || |||||| ||    
T  12948086 cttattaaatctttcatttttaacgttttgatcttttttataaatgaagaccgttggatcatggagggatctattgtaacttataataaaccacaaagac 12948185  T
Q  227 ctaattttttccc 239  Q
    |||||||||||||    
T  12948186 ctaattttttccc 12948198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 73 - 239
Target Start/End: Original strand, 12933870 - 12934037
Alignment:
Q  73 tttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttgannnnnnnnn-aaat 171  Q
    ||||| ||||||||  |||| | |||| ||||||||| |||| ||||||||| |||||||||||||||| |||||||||  |||||          ||||    
T  12933870 tttttaaccttaaatatctatgatgaatcaactttataggtgatccaccataaaccttattaaatctttcatttttaacgttttgatcttttttataaat 12933969  T
Q  172 gtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaattttttccc 239  Q
    | ||| |||||||||||| |||| ||||||||| |||||||| || |||||| |||||||||||||||    
T  12933970 gaagaccgttggatcatggagggatctattgtaacttataataaaccacaaagacctaattttttccc 12934037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 158
Target Start/End: Original strand, 223341 - 223430
Alignment:
Q  69 ttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    ||||||||| | |||||| |||||||||||||||||||| | ||||||| ||||||||| ||||||||| ||||| ||| ||||||||||    
T  223341 ttagtttttaatcttaaatgtctaaggtgaaccaactttgtaggtggtctaccatagactttattaaattttttaatttaaaccgtttga 223430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 24761620 - 24761683
Alignment:
Q  95 gtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    ||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||| ||||||    
T  24761620 gtgaaccaactttataggtggtccaccataaaccgtattaaatcttttatttttaactgtttga 24761683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 15856625 - 15856729
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    ||||||||||||||||||    ||| |||||| ||| |||| |||||||||| |||||| |||| ||||||||||||||||||||| ||| | ||||| |    
T  15856625 gtttaccattttggtcattttcgtttgtttttaaccctaaatgtctaaggtggaccaacattataggtggtccaccatagaccttactaagttttttaat 15856724  T
Q  146 tttaa 150  Q
    |||||    
T  15856725 tttaa 15856729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 131
Target Start/End: Complemental strand, 12830976 - 12830877
Alignment:
Q  32 ataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagacctta 131  Q
    ||||||||  || ||||||| ||||||||| || | |||| ||||| ||| ||||  ||| |||||||||||| |||| |||||||||||||||||||||    
T  12830976 ataactcttctgctgtttactattttggtcctctccgttaatttttaaccctaaatatcttaggtgaaccaacattataggtggtccaccatagacctta 12830877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 131
Target Start/End: Complemental strand, 12862956 - 12862857
Alignment:
Q  32 ataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagacctta 131  Q
    ||||||||  || ||||||| ||||||||| || | |||| ||||| ||| ||||  ||| |||||||||||| |||| |||||||||||||||||||||    
T  12862956 ataactcttctgctgtttactattttggtcctctccgttaatttttaaccctaaatatcttaggtgaaccaacattataggtggtccaccatagacctta 12862857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 22819563 - 22819430
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||| |||||||||  ||  |||||| |||||||||||| | |||||||||| ||| || |  |||||||||||||||| | || |||||||||| ||    
T  22819563 ttggtcccataactcttctgccgtttactattttggtcatctccgttagtttttaaccctatatatctaaggtgaaccaacatgataggtggtccactat 22819464  T
Q  124 agaccttattaaatcttttatttttaaccgtttga 158  Q
    ||| |||| || || ||||| |||||||| |||||    
T  22819463 agatcttaatagat-ttttaattttaaccctttga 22819430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 14210242 - 14210336
Alignment:
Q  53 attttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttt 147  Q
    |||||| || || |||||||||||| ||| ||||  ||| |||||||| ||| ||||  |||||||| ||||||||| ||||||| |||||||||    
T  14210242 attttgatcctctctgttagtttttaaccctaaatatcttaggtgaactaacattataagtggtccatcatagacctcattaaattttttatttt 14210336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 18693798 - 18693894
Alignment:
Q  54 ttttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaa 150  Q
    |||||||| || |||||||||||| || | |||  ||||||||||||||  | ||  |||||| ||||||||||| |||||||| ||||| ||||||    
T  18693798 ttttggtcctctctgttagtttttaacatcaaaactctaaggtgaaccatatataaaggtggttcaccatagaccgtattaaattttttaattttaa 18693894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 7426775 - 7426845
Alignment:
Q  88 gtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    |||||||||||| ||  ||||  ||||||||||||||||||||||||||| ||| | ||| |||| |||||    
T  7426775 gtctaaggtgaatcatatttaaaggtggtccaccatagaccttattaaatttttaaatttcaaccttttga 7426845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 42510206 - 42510295
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaa 135  Q
    |||||| ||||||||  || | |||||||||| |||| ||| ||||| |||| || ||| |||| | | |||||||||||||||||||||    
T  42510206 gtttactattttggttctctccgttagtttttaacctcaaatgtctatggtgcactaacattattgatagtccaccatagaccttattaa 42510295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 158
Target Start/End: Original strand, 21387749 - 21387841
Alignment:
Q  66 ctgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    |||||||||||| || | |||  ||||||||||| ||  ||||  |||||| |||||||| || |||||||| ||||| |||||||| |||||    
T  21387749 ctgttagtttttaacatcaaaactctaaggtgaaacatatttaaaggtggttcaccataggccgtattaaattttttaattttaaccatttga 21387841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 28702729 - 28702769
Alignment:
Q  112 gtggtccaccatagaccttattaaatcttttatttttaacc 152  Q
    ||||||||||||||| |||||||| ||||||| ||||||||    
T  28702729 gtggtccaccatagatcttattaattcttttaattttaacc 28702769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 6e-47; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 31 - 236
Target Start/End: Complemental strand, 6140399 - 6140193
Alignment:
Q  31 cataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagacctt 130  Q
    |||||||||  ||| |||||| |||||||||||  | |||||||||| ||||||||  ||||||||||||||||||||| ||| ||||||||||||||||    
T  6140399 cataactcttctgtcgtttactattttggtcatttccgttagtttttaaccttaaatatctaaggtgaaccaactttataggtagtccaccatagacctt 6140300  T
Q  131 attaaatcttttatttttaaccgtttga-nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacaccta 229  Q
    ||||||||||||||||||||| ||||||          ||||| ||| |||||||||||| |||| |||||||||||||||||| || ||||||||||||    
T  6140299 attaaatcttttatttttaacagtttgatcttttttttaaatggagaccgttggatcatggagggatctattgtagcttataataaaccacaaacaccta 6140200  T
Q  230 atttttt 236  Q
    |||||||    
T  6140199 atttttt 6140193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 25 - 237
Target Start/End: Original strand, 50530574 - 50530787
Alignment:
Q  25 tggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccata 124  Q
    ||||| |||||||||  | | |||||| |||||||||||  |||||| ||||| |||||||| |||||||||||||||||||||| ||| ||||||||||    
T  50530574 tggtcccataactcttctatcgtttactattttggtcatttctgttaatttttaaccttaaaagtctaaggtgaaccaactttataggtagtccaccata 50530673  T
Q  125 gaccttattaaatcttttatttttaaccgtttga-nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaa 223  Q
    ||||||||||||| ||||||||||||| ||| ||          ||||| |||  ||||||||||| |||| |||||||||| ||||||| || ||||||    
T  50530674 gaccttattaaattttttatttttaacggttcgatctttattttaaatggagactgttggatcatggagggatctattgtagtttataataaaccacaaa 50530773  T
Q  224 cacctaattttttc 237  Q
    ||||||||||||||    
T  50530774 cacctaattttttc 50530787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 46 - 283
Target Start/End: Complemental strand, 52660238 - 52660001
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    ||||||||||||| ||||  ||||| |||||| |||||||| |||| ||||||| ||| ||||| | || ||||||||| || ||||||||||||| |||    
T  52660238 gtttaccattttgatcatttctgtttgtttttaaccttaaatgtcttaggtgaatcaattttattgatgatccaccataaactttattaaatctttcatt 52660139  T
Q  146 tttaaccgtttgannnnnnnnn-aaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaattttttccctccat 244  Q
    |||||| ||||||          ||||| ||| |||||||||||| ||   |||||||| ||||| ||| || ||||||||||||||||||| |||||||    
T  52660138 tttaactgtttgatctttgttttaaatggagaccgttggatcatggagaaatctattgttgcttacaataaaccacaaacacctaatttttt-cctccat 52660040  T
Q  245 c-tcttccctatctttcttcttcatccccaaataaaactc 283  Q
    | ||||||||||  ||||||||||||||||||||||||||    
T  52660039 cttcttccctat-gttcttcttcatccccaaataaaactc 52660001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 46 - 236
Target Start/End: Original strand, 17319134 - 17319327
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    |||||| ||||||||| |||| |||||||||| |||||||| |||||||||||||||||||  | ||||||| | |||| || ||||||||| ||||| |    
T  17319134 gtttactattttggtcttcaccgttagtttttaaccttaaatgtctaaggtgaaccaacttcttaggtggtctatcataaactttattaaattttttaat 17319233  T
Q  146 tttaaccgtttga---nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaatttttt 236  Q
    |||||||||| ||            ||||| |||| ||||||||||| ||||||||||| ||||||||||||||  |||| |||||||||||||    
T  17319234 tttaaccgttggatctttttttttaaaatgaagattgttggatcatggaggggtctattctagcttataatgaactacaatcacctaatttttt 17319327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 38370352 - 38370487
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcacctt-aaacgtctaaggtgaaccaactttatgggtggtccacca 122  Q
    ||||||||||||||||  ||| ||||||||||||||||||| | |||||||||| ||||| ||| | |||||||||||||||||| | ||||||||||||    
T  38370352 ttggtctcataactcttctgtcgtttaccattttggtcatctccgttagtttttaaccttaaaatgactaaggtgaaccaactttgtaggtggtccacca 38370451  T
Q  123 tagaccttattaaatcttttatttttaaccgtttga 158  Q
    |||| ||||| || || |||| |||||||| |||||    
T  38370452 tagatcttataaattcatttaattttaaccctttga 38370487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 24 - 216
Target Start/End: Complemental strand, 11115026 - 11114833
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||| |||||||||  ||| |||||||||||||| | || | |||||||||| |||||||| ||||||| |||||||||||| | ||||||| |||||    
T  11115026 ttggtcccataactcttctgtcgtttaccattttggacctctccgttagtttttaaccttaaatgtctaagctgaaccaactttgtaggtggtctaccat 11114927  T
Q  124 agaccttattaaatcttttatttttaaccgtttga--nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaa 216  Q
    |||| ||||||||| ||||| ||||||| ||| ||           ||||| |||| ||||||||||| | ||||||||||||||||||||||||    
T  11114926 agactttattaaatgttttaattttaactgttagatctttttttctaaatgaagattgttggatcatgga-gggtctattgtagcttataatgaa 11114833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 46 - 307
Target Start/End: Original strand, 28102168 - 28102415
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    ||||||||||||||||||  | |||  ||||| |||||||| |||||||||||| ||||||||| |||| |||||| || |||||||||||| ||| |||    
T  28102168 gtttaccattttggtcatttccgtttatttttaaccttaaatgtctaaggtgaatcaactttataggtgatccaccgtaaaccttattaaatatttcatt 28102267  T
Q  146 tttaaccgtttgannnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaattttttccctccatc 245  Q
    ||||||  |||           ||| | ||| |||||||||||| || | |||||||||| |||| || || |||| |||||||||||||| ||||| ||    
T  28102268 tttaacttttt-------ttttaaaaggagaccgttggatcatggagagatctattgtaggttattataaaccacacacacctaatttttt-cctccttc 28102359  T
Q  246 -tcttccctatctttcttcttcatccccaaataaaactccctttcatctttattcatcatctt 307  Q
     |||||||| |  ||||||||||||||||||||||||      ||||||||||||||||||||    
T  28102360 ttcttccctgt-gttcttcttcatccccaaataaaac------tcatctttattcatcatctt 28102415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 38555278 - 38555188
Alignment:
Q  68 gttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    |||||||||| | |||||| |||||||||||||||||||| | ||||||| ||||||||| ||||||||| ||||| ||| ||||||||||    
T  38555278 gttagtttttaatcttaaatgtctaaggtgaaccaactttgtaggtggtctaccatagactttattaaattttttaatttaaaccgtttga 38555188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 31712530 - 31712418
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    ||||||||||||||||||  | |||  ||||| ||||||||  ||||||||||| ||||||||| |||| |||| | || |||||||||||||||| |||    
T  31712530 gtttaccattttggtcatttccgtttatttttaaccttaaatatctaaggtgaatcaactttataggtgatccatcgtaaaccttattaaatctttcatt 31712431  T
Q  146 tttaaccgtttga 158  Q
    || ||||||||||    
T  31712430 ttaaaccgtttga 31712418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 26393173 - 26393039
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||| |||||||||  ||| |||||||||||||| ||   | ||  |||||| ||  |||| ||||||||||||||||| |||| |||||||||||||    
T  26393173 ttggtcccataactcttctgtcgtttaccattttggacacttccgtctgtttttaacactaaatgtctaaggtgaaccaacattataggtggtccaccat 26393074  T
Q  124 agaccttattaaatcttttatttttaaccgtttga 158  Q
    |||||||| ||| | ||||| |||||||| |||||    
T  26393073 agaccttactaagttttttaattttaaccatttga 26393039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 56296263 - 56296397
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||| ||||| ||| |||| ||||||||||||||| ||  | ||| |||||| ||| |||| |||||||||| |||||| | || ||||||| |||||    
T  56296263 ttggtcccataattcttttgtcgtttaccattttggtaatttccgtttgtttttaaccctaaatgtctaaggtggaccaacatcataggtggtctaccat 56296362  T
Q  124 agaccttattaaatcttttatttttaaccgtttga 158  Q
    |||||||| ||| | ||||| |||||||| |||||    
T  56296363 agaccttactaagttttttaattttaaccatttga 56296397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 66 - 232
Target Start/End: Complemental strand, 48207721 - 48207556
Alignment:
Q  66 ctgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttgannnnnnn 165  Q
    |||||| ||||| |||||||| ||||||||||||||||||| ||  | | || ||||||||  ||||||||| ||||| ||||||||||||||           
T  48207721 ctgttattttttaaccttaaatgtctaaggtgaaccaactt-ataag-gatctaccatagattttattaaattttttaattttaaccgtttgatcttttt 48207624  T
Q  166 nnaaa-tgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaatt 232  Q
      ||| || |||| ||||||||| | |||| |||||||||||||||||||||  |||| |||||||||    
T  48207623 taaaaatgaagattgttggatcacggagggatctattgtagcttataatgaacaacaaccacctaatt 48207556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 38419063 - 38418929
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||||||||| |||  ||  ||||||  |||| |||||| | |||||||||| || |||||||| |||| |||||||  ||||| |||||||||||||    
T  38419063 ttggtctcataagtcttctgccgtttactgttttagtcatctccgttagtttttaacattaaacgtttaagatgaaccatatttataggtggtccaccat 38418964  T
Q  124 agaccttattaaatcttttatttttaaccgtttga 158  Q
    |  ||||| ||||| ||||  |||||||| |||||    
T  38418963 atgccttactaaatttttttattttaaccatttga 38418929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 43419377 - 43419288
Alignment:
Q  68 gttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    |||||||||| ||| |||| || |||||||||||||| |||| |||||||||||||||| |||| || || ||||| |||||||| |||||    
T  43419377 gttagtttttaaccataaatgtataaggtgaaccaacattataggtggtccaccatagatcttaatagat-ttttaattttaaccctttga 43419288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 158
Target Start/End: Complemental strand, 3533633 - 3533520
Alignment:
Q  45 tgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttat 144  Q
    ||||||||||||||||| |  | || ||||||| ||  |||| |||||||||  |||||| |||| || |||||||||||||||||| ||| | |||||     
T  3533633 tgtttaccattttggtcctttccgtcagtttttaacactaaatgtctaaggtcgaccaacattataggcggtccaccatagaccttactaagttttttaa 3533534  T
Q  145 ttttaaccgtttga 158  Q
    |||||||| |||||    
T  3533533 ttttaaccatttga 3533520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 1794556 - 1794620
Alignment:
Q  94 ggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    |||| |||||| ||| | |||||||||||||||||||||||||| ||||| ||| ||||||||||    
T  1794556 ggtggaccaaccttaagagtggtccaccatagaccttattaaattttttaatttaaaccgtttga 1794620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 152
Target Start/End: Original strand, 35787866 - 35787994
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||| ||||| |||  ||| ||||||| |||||||| || | |||||||||| || | ||| ||||||||| || ||  ||||  |||||||||||||    
T  35787866 ttggtcccataaatcttctgtcgtttaccgttttggtcctctccgttagtttttaacatcaaatgtctaaggtaaatcatgtttaaaggtggtccaccat 35787965  T
Q  124 agaccttattaaatcttttatttttaacc 152  Q
    |||| ||||||||| ||| | ||||||||    
T  35787966 agactttattaaatttttaaattttaacc 35787994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 158
Target Start/End: Original strand, 44302820 - 44302924
Alignment:
Q  54 ttttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccg 153  Q
    |||||||| || | |||||||||| || ||||| | ||||||||||| |  ||||  |||||| ||||||||||| |||||||| ||||| ||||||||     
T  44302820 ttttggtcctctccgttagtttttaacattaaaagactaaggtgaactatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacca 44302919  T
Q  154 tttga 158  Q
    |||||    
T  44302920 tttga 44302924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 56000379 - 56000491
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    |||||||||||||||| |  |  | ||||||| ||  |||| |||||||||| |||||| |||| ||||||||||| ||||||||| ||| | ||||| |    
T  56000379 gtttaccattttggtcttttccatcagtttttaacactaaatgtctaaggtggaccaacattataggtggtccaccgtagaccttactaagttttttaat 56000478  T
Q  146 tttaaccgtttga 158  Q
    ||||||| |||||    
T  56000479 tttaaccatttga 56000491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 29663770 - 29663840
Alignment:
Q  82 ttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaacc 152  Q
    ||||| ||||||||||||||||| |||| |||||||||||||| |||||| |||   ||||| ||||||||    
T  29663770 ttaaatgtctaaggtgaaccaacattataggtggtccaccataaaccttactaagatttttaattttaacc 29663840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 34438498 - 34438587
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaa 135  Q
    |||||| ||||||||  || |||||||||||| |||| ||| ||||| |||| || ||| |||| | | |||||||||||||||||||||    
T  34438498 gtttactattttggttctctctgttagtttttaacctcaaatgtctatggtggactaacattatagatagtccaccatagaccttattaa 34438587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 155
Target Start/End: Complemental strand, 42810182 - 42810115
Alignment:
Q  88 gtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtt 155  Q
    ||||| ||||||||||  ||| | || ||||||||||||||||||||||| ||||| ||| |||||||    
T  42810182 gtctatggtgaaccaatcttaagagtagtccaccatagaccttattaaattttttaatttaaaccgtt 42810115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 44159184 - 44159262
Alignment:
Q  53 attttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagacctta 131  Q
    |||||||||||| | |||||||||| | | ||||  ||||||||||| |||  |||| |||||||||||||||| ||||    
T  44159184 attttggtcatctccgttagtttttaatcctaaatatctaaggtgaaacaatattataggtggtccaccatagatctta 44159262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 53432199 - 53432269
Alignment:
Q  88 gtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    ||||| ||||||||||||||| | ||||  ||||||| |||||||||| | ||| | ||||||||||||||    
T  53432199 gtctatggtgaaccaactttaagagtggctcaccatacaccttattaattttttcaattttaaccgtttga 53432269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 6139067 - 6139116
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagt 73  Q
    ||||||||||||||||  |||||||||  |||||||||||| ||||||||    
T  6139067 ttggtctcataactcttatgttgtttattattttggtcatctctgttagt 6139116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 17494219 - 17494308
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaa 135  Q
    |||||| || ||||| ||| | |||| ||||| |||||||| |||||| ||||| |||| |||   || |||||||||||||||||||||    
T  17494219 gtttactatattggttatctccgttactttttaaccttaaatgtctaacgtgaaacaacgttaaaagtagtccaccatagaccttattaa 17494308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 158
Target Start/End: Original strand, 40144655 - 40144740
Alignment:
Q  73 tttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    ||||| |||||||| || ||||||||||||||||||| | | ||| || || ||| ||||||||  || || ||||||||||||||    
T  40144655 tttttaaccttaaatgtttaaggtgaaccaactttatagatagtctactatggactttattaaaatttgtaattttaaccgtttga 40144740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 29687994 - 29687890
Alignment:
Q  54 ttttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccg 153  Q
    ||||||||||| |  ||||||||| || | ||| ||||| || ||||||  ||||  ||||||||||| || |||||||||||| ||| | ||||||||     
T  29687994 ttttggtcatctcctttagtttttaacatcaaatgtctacggcgaaccatatttaaaggtggtccaccgtaaaccttattaaatttttaagttttaacca 29687895  T
Q  154 tttga 158  Q
    |||||    
T  29687894 tttga 29687890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 35350064 - 35350024
Alignment:
Q  112 gtggtccaccatagaccttattaaatcttttatttttaacc 152  Q
    ||||||||||||||| |||||||| ||||||| ||||||||    
T  35350064 gtggtccaccatagatcttattaattcttttaattttaacc 35350024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 39057723 - 39057683
Alignment:
Q  112 gtggtccaccatagaccttattaaatcttttatttttaacc 152  Q
    ||||||||||||||| |||||||| ||||||| ||||||||    
T  39057723 gtggtccaccatagatcttattaattcttttaattttaacc 39057683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 24 - 283
Target Start/End: Complemental strand, 293686 - 293426
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||||||||| |||  ||| |||||||||||||||| || | |||  ||||| |||||||| |||||||||||||||||||||| |||||||||||||    
T  293686 ttggtctcataagtcttctgtcgtttaccattttggtcctctccgtttatttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccat 293587  T
Q  124 agaccttattaaatcttttatttttaaccgtttgannnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaa 223  Q
    ||||||||||||||    ||||||||||| |||||         ||||| |||||||||||||||| || | ||||||||||||||||||||| ||||||    
T  293586 agaccttattaaataacatatttttaaccatttgatctttttttaaatggagatcgttggatcatggagagatctattgtagcttataatgaaccacaaa 293487  T
Q  224 caccta-attttttccctccatc-tcttccctatctttcttcttcatccccaaataaaactc 283  Q
    ||||||  ||||||  ||| ||| |||||||| |  ||||||||||||| ||||||||||||    
T  293486 cacctatttttttttactctatcttcttccctgt-gttcttcttcatcctcaaataaaactc 293426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 46 - 272
Target Start/End: Original strand, 31738455 - 31738682
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    |||||||||||||||| || | |||||||||| |||||||| |||||| ||||||||||||||| |  |||||||||||||  ||||||||||    |||    
T  31738455 gtttaccattttggtcctctccgttagtttttaaccttaaatgtctaatgtgaaccaactttatagacggtccaccatagattttattaaatcacaaatt 31738554  T
Q  146 tttaaccgtttgannnnnnnnn--aaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaattttttccctcca 243  Q
    ||||||| |||||           ||||| ||| |||||||||||| || | ||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  31738555 tttaaccatttgatattttttttaaaatggagaccgttggatcatggagagatctattgtagcttataatgaaccacaaacacctaatttttt-cctcca 31738653  T
Q  244 tc-tcttccctatctttcttcttcatcccc 272  Q
    || ||||||||||  |||||||||||||||    
T  31738654 tcttcttccctat-gttcttcttcatcccc 31738682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 14328820 - 14328704
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||||||||| ||| |||| |||||| ||||||||| || | |||| ||||| |||||||| |||||||||||||||||||||| |||||||||||||    
T  14328820 ttggtctcataattcttttgtcgtttactattttggtcctctccgttactttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccat 14328721  T
Q  124 agaccttattaaatctt 140  Q
    |||||||||||||||||    
T  14328720 agaccttattaaatctt 14328704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 14421830 - 14421714
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||||||||| ||| |||| |||||| ||||||||| || | |||| ||||| |||||||| |||||||||||||||||||||| |||||||||||||    
T  14421830 ttggtctcataattcttttgtcgtttactattttggtcctctccgttactttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccat 14421731  T
Q  124 agaccttattaaatctt 140  Q
    |||||||||||||||||    
T  14421730 agaccttattaaatctt 14421714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 68 - 236
Target Start/End: Original strand, 16268655 - 16268824
Alignment:
Q  68 gttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga-nnnnnnnn 166  Q
    ||||||| || |||||||| |||||| ||||||||||||| |  |||||| ||||||||| ||||||||| ||||| ||||| ||||||||             
T  16268655 gttagttattaaccttaaatgtctaacgtgaaccaactttgtatgtggtctaccatagactttattaaattttttaattttatccgtttgattttttctt 16268754  T
Q  167 naaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaatttttt 236  Q
      |||| |||| ||||||||||| |||| |||||| |||||||||||||| ||||| |||||||||||||    
T  16268755 tgaatgaagattgttggatcatggagggatctattttagcttataatgaaccacaaccacctaatttttt 16268824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 46 - 236
Target Start/End: Original strand, 9927697 - 9927889
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    |||||| |||||||||||| | |||| ||||| |||||||| ||||||| |||||||||||| | ||||||| |||| |||| |||||| || ||||| |    
T  9927697 gtttactattttggtcatctccgttaatttttaaccttaaatgtctaagatgaaccaactttgtaggtggtctacca-agactttattacattttttaat 9927795  T
Q  146 tttaaccg-tttga--nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaatttttt 236  Q
    |||||||| |||||           ||||| |||| ||||||||||| |||  ||||||||||| |||||||||  |||| |||||||||||||    
T  9927796 tttaaccgttttgattttatttcttaaatgaagattgttggatcatggaggtatctattgtagcatataatgaactacaaccacctaatttttt 9927889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 27440199 - 27440087
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    |||||| ||||||||| || | |||| ||||| || ||||| ||||||||||||  |||||| | ||||||| |||||| || ||||||||| ||||| |    
T  27440199 gtttactattttggtcctctccgttaatttttaactttaaatgtctaaggtgaattaactttgtaggtggtctaccataaactttattaaattttttaat 27440100  T
Q  146 tttaaccgtttga 158  Q
    |||||||||||||    
T  27440099 tttaaccgtttga 27440087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 246
Target Start/End: Complemental strand, 14327317 - 14327248
Alignment:
Q  177 tcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaattttttccctccatct 246  Q
    ||||||||||| | || | | || |||||||||||||||| ||||||||||||||||||| |||||||||    
T  14327317 tcgttggatcaaggagagatatactgtagcttataatgaaccacaaacacctaatttttttcctccatct 14327248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 246
Target Start/End: Complemental strand, 14420327 - 14420258
Alignment:
Q  177 tcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaattttttccctccatct 246  Q
    ||||||||||| | || | | || |||||||||||||||| ||||||||||||||||||| |||||||||    
T  14420327 tcgttggatcaaggagagatatactgtagcttataatgaaccacaaacacctaatttttttcctccatct 14420258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 126
Target Start/End: Original strand, 2130877 - 2130955
Alignment:
Q  48 ttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccataga 126  Q
    |||| ||||||||| || |  ||||| ||| ||||||||  |||||||||||||| |||||| |||||| |||||||||    
T  2130877 ttactattttggtcctctcccttagtatttaaccttaaatatctaaggtgaaccacctttataggtggttcaccataga 2130955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 22298827 - 22298869
Alignment:
Q  180 ttggatcatgaaggggtctattgtagcttataatgaagcacaa 222  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||    
T  22298827 ttggatcattaagggatctattgtagcttataatgaaccacaa 22298869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 46 - 238
Target Start/End: Complemental strand, 13367074 - 13366882
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    |||||| ||||||||| || | |||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  13367074 gtttactattttggtcctctccgttagtttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaaaccttttatt 13366975  T
Q  146 tttaaccgtttgannnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaattttttcc 238  Q
    |||||||||||||         || || |||  ||||||||| | || | ||||||||||||| ||||||| |||||||||||||||||||||    
T  13366974 tttaaccgtttgatatttttttaattggagactgttggatcaagtagagatctattgtagcttgtaatgaaccacaaacacctaattttttcc 13366882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 68 - 304
Target Start/End: Complemental strand, 37324690 - 37324459
Alignment:
Q  68 gttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttgannnnnnnnn 167  Q
    |||| |||||||| ||||| |||||||||||||||||||||| |||||||||||||| | |||||||||||||||||| ||| ||||||||             
T  37324690 gttaatttttcactttaaatgtctaaggtgaaccaactttataggtggtccaccataaatcttattaaatcttttattcttagccgtttgatcttttttt 37324591  T
Q  168 aaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaattttttccctccatc-tcttccctatctttcttcttc 266  Q
    ||||| ||||| ||| |||||| |||| ||||||||||||||||| ||| |||||||||| |||||||| |||||||| ||||||||||  |||||||||    
T  37324590 aaatggagatcattgaatcatggagggatctattgtagcttataacgaaccacaaacaccgaatttttt-cctccatcttcttccctat-gttcttcttc 37324493  T
Q  267 atccccaaataaaactccctttcatctttattcatcat 304  Q
    |||||||| |||||    ||||||| ||||||||||||    
T  37324492 atccccaattaaaa----ctttcatttttattcatcat 37324459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 69 - 304
Target Start/End: Original strand, 44606254 - 44606485
Alignment:
Q  69 ttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga-nnnnnnnnn 167  Q
    ||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||              
T  44606254 ttagtttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttgttaaatcttttatttttaaccgtttgatctttttttt 44606353  T
Q  168 aaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaattttttccctccatc-tcttccctatctttcttcttc 266  Q
    ||||| | || ||| |||||||||| | |||||| || || |||||||| ||||||||||| ||||||| | |||||| ||||||| ||  |||||||||    
T  44606354 aaatggatattgttagatcatgaagagatctattttacctaataatgaaccacaaacacctgatttttt-catccatcttcttccccat-gttcttcttc 44606451  T
Q  267 atccccaaataaaactccctttcatctttattcatcat 304  Q
    |||||||||||||||||    |||||||||||||||||    
T  44606452 atccccaaataaaactc----tcatctttattcatcat 44606485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 46 - 236
Target Start/End: Original strand, 35944000 - 35944191
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    |||||| |||||||||||| | |||||||||| || ||||| |||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||    
T  35944000 gtttactattttggtcatctccgttagtttttaactttaaatgtctaaggtgaaccaactttataggtgatccaccatagatcttattaaatcttttatt 35944099  T
Q  146 tttaaccgtttga-nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaatttttt 236  Q
    |||||| ||||||          ||||| | ||||||||||||||||||||||||||||| ||||||||||| | | |||| ||||||||||    
T  35944100 tttaactgtttgatctttattttaaatggaaatcgttggatcatgaaggggtctattgtaacttataatgaaccgctaacaactaatttttt 35944191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 53 - 238
Target Start/End: Complemental strand, 2421310 - 2421123
Alignment:
Q  53 attttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaacc 152  Q
    ||||||||| ||  ||||||||||| |||||||| |||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||    
T  2421310 attttggtcctctttgttagtttttaaccttaaatgtctaaggtgaaccaactttatagatggtccatcatagaccttattaaatcttttatttttaacc 2421211  T
Q  153 gtttga--nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaattttttcc 238  Q
    ||||||           ||||| ||| | ||||||||   || | |||||||||| |||||||||| |||||||||||||||||||||    
T  2421210 gtttgatctttttctttaaatggagaccattggatcaatgagagatctattgtagtttataatgaaccacaaacacctaattttttcc 2421123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 46 - 273
Target Start/End: Original strand, 19913584 - 19913810
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    ||||| |||||||||| || | |||||||||| ||||||||  ||||||||||||||||||||| | ||||||||||||||| ||||||||||   | ||    
T  19913584 gtttatcattttggtcctctccgttagtttttaaccttaaatttctaaggtgaaccaactttatagatggtccaccatagactttattaaatcacatgtt 19913683  T
Q  146 tttaaccgtttgannnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaattttttccctccatc 245  Q
    ||||||| |||||         ||||| ||| |||||||||| | |||| ||||| ||||||||||||||| |||||||||| |||||||| ||||||||    
T  19913684 tttaaccatttgatatttttttaaatggagaccgttggatcaaggagggatctatcgtagcttataatgaaccacaaacaccaaatttttt-cctccatc 19913782  T
Q  246 -tcttccctatctttcttcttcatcccca 273  Q
     |||||| |||  ||||||||||||||||    
T  19913783 ttcttccttat-gttcttcttcatcccca 19913810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 20308675 - 20308801
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    ||||||||||||||||  ||| |||||| |||||||||||  |  ||| ||||| |||||||| |||||||||||||||||||||| | | |||| ||||    
T  20308675 ttggtctcataactcttctgtcgtttactattttggtcatttccattaatttttaaccttaaatgtctaaggtgaaccaactttatagatagtccgccat 20308774  T
Q  124 agaccttattaaatcttttatttttaa 150  Q
    |||||||||||||||||||||||||||    
T  20308775 agaccttattaaatcttttatttttaa 20308801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 21095308 - 21095434
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    ||||||||||||||||  ||| |||||| |||||||||||  |  ||| ||||| |||||||| |||||||||||||||||||||| | | |||| ||||    
T  21095308 ttggtctcataactcttctgtcgtttactattttggtcatttccattaatttttaaccttaaatgtctaaggtgaaccaactttatagatagtccgccat 21095407  T
Q  124 agaccttattaaatcttttatttttaa 150  Q
    |||||||||||||||||||||||||||    
T  21095408 agaccttattaaatcttttatttttaa 21095434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 36070270 - 36070372
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    |||||| ||||||||| || | |||||| ||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  36070270 gtttactattttggtcctccccgttagtctttgaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaaatattttatt 36070369  T
Q  146 ttt 148  Q
    |||    
T  36070370 ttt 36070372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 196 - 308
Target Start/End: Original strand, 36070425 - 36070537
Alignment:
Q  196 tctattgtagcttataatgaagcacaaacacctaattttttccctccatc-tcttccctatctttcttcttcatccccaaataaaactccctttcatctt 294  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||||| ||| | | || |||    
T  36070425 tctattgtagcttataatgaaccacaaacacctaatttttt-cctccatcttcttccctattgttcttcttcatccccaaataaatctctcatccaactt 36070523  T
Q  295 tattcatcatcttg 308  Q
    ||||||||||||||    
T  36070524 tattcatcatcttg 36070537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 222 - 308
Target Start/End: Original strand, 37472645 - 37472732
Alignment:
Q  222 aacacctaattttttccctccatct-cttccctatctttcttcttcatccccaaataaaactccctttcatctttattcatcatcttg 308  Q
    |||||||| ||||||| |||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37472645 aacacctagttttttctctccatcttcttccctatcattcttcttcatccccaaataaaactctctttcatctttattcatcatcttg 37472732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 24 - 238
Target Start/End: Original strand, 8095416 - 8095633
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||| ||| ||||| |||| |||||| ||||||||| |  | |||||||||| | |||||| |||||||||||||||||||||| |||| | ||||||    
T  8095416 ttggtcccattactcttttgtcgtttactattttggtcctttccgttagtttttaatcttaaatgtctaaggtgaaccaactttataggtgatgcaccat 8095515  T
Q  124 agaccttattaaatcttttatttttaaccgtttga---nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcac 220  Q
    | ||||||||||||||| ||| ||||||| |||||            ||||| ||| ||||||||||   || | |||||||||| ||||||| || |||    
T  8095516 ataccttattaaatcttgtatctttaaccatttgattttttttcttcaaatggagaccgttggatcaaagagagatctattgtaggttataataaaccac 8095615  T
Q  221 aaacacctaattttttcc 238  Q
    ||||||||||||||||||    
T  8095616 aaacacctaattttttcc 8095633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 237
Target Start/End: Original strand, 8395087 - 8395279
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    |||||||||||||||| || | |||||||||| |||||||| |  |||  |||||||||||| | |||||||||||||| || ||||||||   |||| |    
T  8395087 gtttaccattttggtcctctccgttagtttttaaccttaaatggttaaaatgaaccaactttgtaggtggtccaccatacactttattaaaaaatttaat 8395186  T
Q  146 tttaaccgtttga-nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaattttttc 237  Q
    |||||||||||||          ||||| | |||||| ||||||| |||  ||||| |||||||||  |||| ||||| ||||||||||||||    
T  8395187 tttaaccgtttgatcgtttttttaaatgaaaatcgtttgatcatggaggaatctatcgtagcttatggtgaaccacaaccacctaattttttc 8395279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 31871494 - 31871592
Alignment:
Q  53 attttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaacc 152  Q
    ||||||||| |  |||||||||||| ||||||||||||||||||| |||||| |       |||||| |||| ||||||| |||||||||||||||||||    
T  31871494 attttggtcctttctgttagtttttaaccttaaacgtctaaggtggaccaacat-------ggtccatcataaaccttataaaatcttttatttttaacc 31871586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 24069492 - 24069358
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||| |||||||||  ||  |||||||||||||||| |  | ||  |||||| ||  |||| |||||||||| |||||| |||| |||||||||||||    
T  24069492 ttggtcccataactcttctgccgtttaccattttggtcctttccgtctgtttttaacactaaatgtctaaggtggaccaacattataggtggtccaccat 24069393  T
Q  124 agaccttattaaatcttttatttttaaccgtttga 158  Q
    |||||||| ||| | ||||| |||||||| |||||    
T  24069392 agaccttactaagttttttaattttaaccatttga 24069358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 158
Target Start/End: Original strand, 10052204 - 10052308
Alignment:
Q  54 ttttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccg 153  Q
    ||||||||||| |  ||||||||| || ||||| ||||||| |||||||  ||||  |||||||||||||| |||||||||||| ||| | ||||||||     
T  10052204 ttttggtcatctcctttagtttttaacattaaatgtctaagatgaaccatatttaaaggtggtccaccataaaccttattaaatttttaagttttaaccc 10052303  T
Q  154 tttga 158  Q
    |||||    
T  10052304 tttga 10052308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 34617219 - 34617107
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    ||||| ||||||||||||  | || ||||||| ||| |||| || ||||||| |||||| |||  ||||||||||| ||||||||| ||||| ||||| |    
T  34617219 gtttatcattttggtcatttccgtcagtttttaaccctaaatgtataaggtggaccaacattacaggtggtccaccgtagaccttactaaattttttaat 34617120  T
Q  146 tttaaccgtttga 158  Q
    ||||||| |||||    
T  34617119 tttaaccatttga 34617107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 7486147 - 7486281
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||| ||||| ||| ||| ||||||| ||||||||| || | |||||||||| || | ||| |||||| ||||||||  ||||   || |||||||||    
T  7486147 ttggtcccataaatcttttgctgtttactattttggtcctctccgttagtttttaacatcaaatgtctaaagtgaaccatgtttaaatgttgtccaccat 7486246  T
Q  124 agaccttattaaatcttttatttttaaccgtttga 158  Q
    |||||||||||||| ||| | ||||| || |||||    
T  7486247 agaccttattaaatttttaaattttagccttttga 7486281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 158
Target Start/End: Complemental strand, 37276257 - 37276155
Alignment:
Q  56 ttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtt 155  Q
    |||||| || |||||||||||| || | ||| |||||||||||||||  ||||  |||||| ||| ||||||| |||||||| ||||| |||||||| ||    
T  37276257 ttggtcctctctgttagtttttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcactatagaccatattaaattttttaattttaaccatt 37276158  T
Q  156 tga 158  Q
    |||    
T  37276157 tga 37276155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 29738518 - 29738573
Alignment:
Q  200 ttgtagcttataatgaagcacaaacacctaattttttccctccatc-tcttccctat 255  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||    
T  29738518 ttgtagcttataatgaatcacaaacacctaatttttt-cctccatcttcttccctat 29738573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 7770885 - 7770810
Alignment:
Q  83 taaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    |||| |||||||||| |||||| |||| |||||||| |||||||||||| ||| | ||||| |||||||| |||||    
T  7770885 taaatgtctaaggtggaccaacattataggtggtcctccatagaccttactaagttttttaattttaaccatttga 7770810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 7796795 - 7796720
Alignment:
Q  83 taaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    |||| |||||||||| |||||| |||| |||||||| |||||||||||| ||| | ||||| |||||||| |||||    
T  7796795 taaatgtctaaggtggaccaacattataggtggtcctccatagaccttactaagttttttaattttaaccatttga 7796720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 7816076 - 7816001
Alignment:
Q  83 taaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    |||| |||||||||| |||||| |||| |||||||| |||||||||||| ||| | ||||| |||||||| |||||    
T  7816076 taaatgtctaaggtggaccaacattataggtggtcctccatagaccttactaagttttttaattttaaccatttga 7816001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 37472473 - 37472606
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||| ||||| ||| |||| |||||||||||||||| |  |  ||  ||||| |||||||| ||||   ||||| |||||||||  ||||||||| ||    
T  37472473 ttggtcccataagtcttttgtcgtttaccattttggtcctttccatttatttttaaccttaaatgtctgttgtgaaacaactttatatgtggtccac-at 37472571  T
Q  124 agaccttattaaatcttttatttttaaccgtttga 158  Q
    |||||||||||||||   ||||||||||| |||||    
T  37472572 agaccttattaaatcacatatttttaaccatttga 37472606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 39515269 - 39515403
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||||||||||||| |||   |||||| ||||||||||  | ||   ||||| ||  |||| |||||||||| |||||| |||| ||||||||| |||    
T  39515269 ttggtctcataactcttttgccatttacctttttggtcatttccgtctatttttaacactaaatgtctaaggtggaccaacattataggtggtccatcat 39515368  T
Q  124 agaccttattaaatcttttatttttaaccgtttga 158  Q
    |||||||| ||| | || || |||||||| |||||    
T  39515369 agaccttactaagttttataattttaaccatttga 39515403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 32552457 - 32552502
Alignment:
Q  113 tggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    |||||||||||| |||||||||| ||||||| ||||||||||||||    
T  32552457 tggtccaccataaaccttattaattcttttaattttaaccgtttga 32552502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 39173277 - 39173322
Alignment:
Q  113 tggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    |||||||||||| |||||||||| ||||||| ||||||||||||||    
T  39173277 tggtccaccataaaccttattaattcttttaattttaaccgtttga 39173322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 39220771 - 39220860
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaa 135  Q
    |||||| ||||| || ||| |||||||||||| |||||||| |||||||||||| |||  |||   || ||| |||||||||||||||||    
T  39220771 gtttactattttcgttatctctgttagtttttaaccttaaatgtctaaggtgaaacaatattaaaagtagtctaccatagaccttattaa 39220860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 158
Target Start/End: Original strand, 21961923 - 21962027
Alignment:
Q  54 ttttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccg 153  Q
    |||||||| || | |||||||||| || | ||| |||| ||||||||||  ||||  ||||||||||||||  ||||| ||||| ||||| ||||||||     
T  21961923 ttttggtcctctccgttagtttttaacatcaaatgtcttaggtgaaccatgtttaaaggtggtccaccatatgccttactaaattttttaattttaacca 21962022  T
Q  154 tttga 158  Q
    |||||    
T  21962023 tttga 21962027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 10669433 - 10669354
Alignment:
Q  79 accttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    |||| ||| ||||| ||||||||||| ||| | ||||||||||||||| | |||||||| ||||| ||| ||||| ||||    
T  10669433 acctcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcctattaaatattttaatttaaaccgattga 10669354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 16363837 - 16363774
Alignment:
Q  45 tgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaacttta 108  Q
    ||||||| ||||||||| || | ||||||| || || ||||| |||||||||||||||||||||    
T  16363837 tgtttactattttggtcctctccgttagttattaactttaaatgtctaaggtgaaccaacttta 16363774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 152
Target Start/End: Original strand, 36756135 - 36756262
Alignment:
Q  25 tggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccata 124  Q
    ||||| ||||| |||  ||| |||||| |||||||||||| | |||||||||| || | |||  ||||||||||| ||  ||||  |||||| |||||||    
T  36756135 tggtcacataaatcttatgtcgtttactattttggtcatctccgttagtttttaacatcaaatttctaaggtgaatcatatttaaaggtggttcaccata 36756234  T
Q  125 gaccttattaaatcttttatttttaacc 152  Q
      ||||||||||| ||| | ||||||||    
T  36756235 agccttattaaatttttaaattttaacc 36756262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 36070567 - 36070612
Alignment:
Q  335 ctctcattcattatttttaattaattcatctttaaatcactaataaa 381  Q
    ||||||||||||||||||||| |||| ||||||||| ||||||||||    
T  36070567 ctctcattcattatttttaatcaattaatctttaaa-cactaataaa 36070612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 39546701 - 39546611
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaa 136  Q
    ||||||| ||||||||||| | |||||||||| || | ||| || |||| |||||||  ||||  ||||||||||||| ||||||| ||||    
T  39546701 gtttaccgttttggtcatctccgttagtttttaacatcaaatgtttaagatgaaccatgtttaaaggtggtccaccatggaccttagtaaa 39546611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 40250159 - 40250248
Alignment:
Q  68 gttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    |||||||||| ||| ||||  |||||| |||| |||| ||||  ||||||||||||| |||||||||||  ||||| |||||||| |||||    
T  40250159 gttagtttttaaccctaaatatctaagatgaatcaacattatatgtggtccaccatataccttattaaa-attttaattttaaccctttga 40250248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 35800934 - 35800889
Alignment:
Q  113 tggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    |||||||||||| ||||||| || ||||||| ||||||||||||||    
T  35800934 tggtccaccataaaccttatcaattcttttaattttaaccgtttga 35800889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 135
Target Start/End: Complemental strand, 44103312 - 44103231
Alignment:
Q  54 ttttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaa 135  Q
    |||||||| || | |||||||||| || | ||| |||||||||||||||  ||||  ||||||||||||||  |||||||||    
T  44103312 ttttggtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatatgccttattaa 44103231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 32553864 - 32553820
Alignment:
Q  111 ggtggtccaccatagaccttattaaatcttttatttttaaccgtt 155  Q
    |||||||||||||| |||||||||| |||||||  ||||||||||    
T  32553864 ggtggtccaccataaaccttattaattcttttaaatttaaccgtt 32553820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 35799610 - 35799654
Alignment:
Q  111 ggtggtccaccatagaccttattaaatcttttatttttaaccgtt 155  Q
    |||||||||||||| |||||||||| |||||||  ||||||||||    
T  35799610 ggtggtccaccataaaccttattaattcttttaaatttaaccgtt 35799654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 27 - 255
Target Start/End: Complemental strand, 37869083 - 37868852
Alignment:
Q  27 gtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccataga 126  Q
    ||||||||| |||  ||| ||||||| |||||||| || | ||| |||||| |||||||| ||||||||||| |||||||||| |||||||||| |||||    
T  37869083 gtctcataagtcttctgtcgtttacctttttggtcttctccgtttgtttttaaccttaaatgtctaaggtgagccaactttataggtggtccacaataga 37868984  T
Q  127 ccttattaaatcttttatttttaaccgtttga--nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaac 224  Q
    ||||||||||||   || ||||||||||||||           ||| | |||| |||||||||||||||| ||||||||||||||||||||| |||||||    
T  37868983 ccttattaaatcacatacttttaaccgtttgatcttttttgttaaacggagattgttggatcatgaagggatctattgtagcttataatgaatcacaaac 37868884  T
Q  225 acctaattttttccctccatc-tcttccctat 255  Q
    |||||||||||| |||||||| ||||||||||    
T  37868883 acctaatttttttcctccatcttcttccctat 37868852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 46 - 255
Target Start/End: Original strand, 10367331 - 10367542
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    ||||||| |||| ||| || | ||| |||||| |||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||   || |    
T  10367331 gtttacctttttagtcgtctccgtttgtttttaaccttaaatgtctaaggtgaaccaactttataggtggtccacaatagaccttattaaatcacatact 10367430  T
Q  146 tttaaccgtttga--nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaattttttccctcca 243  Q
    |||||||||||||           ||| | ||| ||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  10367431 tttaaccgtttgatcttttttgttaaacggagaccgttggatcatgaaggaatctattgtagcttataatgaatcacaaacacctaatttttt-cctcca 10367529  T
Q  244 tc-tcttccctat 255  Q
    || ||||||||||    
T  10367530 tcttcttccctat 10367542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 46 - 254
Target Start/End: Original strand, 14509301 - 14509510
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    |||||| ||||||||| || | |||| ||||| |||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||    
T  14509301 gtttactattttggtcctctccgttaatttttaaccttaaatgtctaaggtaaaccaactttataggtggtccaccatagaccttattaaaccttttatt 14509400  T
Q  146 tttaaccgtttga-nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaattttttccctccat 244  Q
    |||||||||||||          || || |||  ||||||||| | || | |||| |||||||| ||||||| ||||||||||||||||||| |||||||    
T  14509401 tttaaccgtttgatattttttttaattggagactgttggatcaagtagagatctactgtagcttgtaatgaaccacaaacacctaatttttt-cctccat 14509499  T
Q  245 c-tcttcccta 254  Q
    | |||||||||    
T  14509500 cttcttcccta 14509510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 72 - 230
Target Start/End: Complemental strand, 11575484 - 11575326
Alignment:
Q  72 gtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttgannnnnnnnnaaat 171  Q
    |||||| |||||||| |||||||||||| ||||||||| |||| ||||||||| |||||||||||||||| |||| |||||||||||         ||||    
T  11575484 gtttttaaccttaaatgtctaaggtgaatcaactttataggtgatccaccataaaccttattaaatctttcatttctaaccgtttgatctttttttaaat 11575385  T
Q  172 gtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaa 230  Q
    | |||  |||||||||||||||| |||||||||||||||||| || |||||| ||||||    
T  11575384 ggagacagttggatcatgaagggatctattgtagcttataataaaccacaaatacctaa 11575326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 46 - 238
Target Start/End: Complemental strand, 12959729 - 12959535
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    ||||||| ||||| || || | ||| || ||| |||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||   ||||    
T  12959729 gtttacctttttgatcctctccgtttgtctttaaccttaaatgtctaaggtgaaccaactttataggtggtccacaatagaccttattaaatcacatatt 12959630  T
Q  146 tttaaccgtttga--nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaattttttcc 238  Q
    ||||||| |||||           ||| | |||  |||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||    
T  12959629 tttaaccttttgatcttttttgttaaacggagactgttggatcatgaagggatctattgtaccttataatgaatcacaaacacctaattttttcc 12959535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 46 - 307
Target Start/End: Original strand, 7037058 - 7037314
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    ||||||||||||||||||  | |||  ||||| ||||||||  ||||||||||| ||||||||| |||| |||||| || |||||||||||||||| |||    
T  7037058 gtttaccattttggtcatttccgtttatttttaaccttaaatatctaaggtgaatcaactttataggtgatccaccgtaaaccttattaaatctttcatt 7037157  T
Q  146 tttaaccgtttga-nnnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaattttttccctccat 244  Q
    |||||||||||||          ||| | ||| |||||||||||| || | |||||||||| |||| || || |||| |||||||||||||| ||||| |    
T  7037158 tttaaccgtttgatcttttttttaaaaggagaccgttggatcatggagagatctattgtaggttattataaaccacacacacctaatttttttcctcctt 7037257  T
Q  245 c-tcttccctatctttcttcttcatccccaaataaaactccctttcatctttattcatcatctt 307  Q
    | ||||| || |  |||||||||||| |||||||||||      ||||||||||||||||||||    
T  7037258 cttcttctctgt-gttcttcttcatcaccaaataaaac------tcatctttattcatcatctt 7037314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 68 - 150
Target Start/End: Complemental strand, 25570872 - 25570790
Alignment:
Q  68 gttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaa 150  Q
    |||||||||| | |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  25570872 gttagtttttaaacttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaaatattttatttttaa 25570790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 28109915 - 28109781
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||| ||||||| |  ||| |||||||||||||||| || | |||| ||||| |||||||| |||||||||||||||||||| | |||||||||||||    
T  28109915 ttggtcccataacttttctgtagtttaccattttggtcctctccgttattttttaaccttaaatgtctaaggtgaaccaactttgtaggtggtccaccat 28109816  T
Q  124 agaccttattaaatcttttatttttaaccgtttga 158  Q
     || ||||| || || |||| |||||||| |||||    
T  28109815 ggatcttataaattcatttaattttaaccctttga 28109781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 53 - 232
Target Start/End: Original strand, 8537111 - 8537289
Alignment:
Q  53 attttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaacc 152  Q
    |||||||||||| | |||||||||| |||||||| ||||||| || ||||||||| |  ||||| |||||||||| ||||||||   |||| ||||||||    
T  8537111 attttggtcatctccgttagtttttaaccttaaatgtctaagatgtaccaactttttaagtggttcaccatagactttattaaaaaatttaattttaacc 8537210  T
Q  153 gtttgannnnnnnnnaaatgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaatt 232  Q
     |||||         ||||| |||||||| |||||| ||||| |||||| | |||||||||||| ||||| |||||||||    
T  8537211 atttgatctttttttaaatgaagatcgttagatcataaagggatctatt-ttgcttataatgaaccacaatcacctaatt 8537289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 4829539 - 4829640
Alignment:
Q  28 tctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagac 127  Q
    |||||||| |||  ||| |||||| ||||||||| || |||||||| ||| ||||||||  |||||||| |||||||||||| |||||||||||||||||    
T  4829539 tctcataaatcttatgtcgtttactattttggtcctctctgttagtgtttaaccttaaatatctaaggtaaaccaactttataggtggtccaccatagac 4829638  T
Q  128 ct 129  Q
    ||    
T  4829639 ct 4829640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 35799604 - 35799716
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    |||||||  ||||||| || | ||||| |||| |||||||| |||||||||||| |||||||||  |||||| ||||||||| ||||||||| || || |    
T  35799604 gtttacctctttggtcctctccgttagcttttaaccttaaatgtctaaggtgaatcaactttataagtggtctaccatagactttattaaatgttataat 35799703  T
Q  146 tttaaccgtttga 158  Q
    |||||||||||||    
T  35799704 tttaaccgtttga 35799716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 339 - 400
Target Start/End: Original strand, 29077047 - 29077108
Alignment:
Q  339 cattcattatttttaattaattcatctttaaatcactaataaactctcagatcaatctcatt 400  Q
    ||||||||||||||||| ||||||||||||||||||||||||| || || ||||||||||||    
T  29077047 cattcattatttttaatcaattcatctttaaatcactaataaattcccaaatcaatctcatt 29077108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 7490241 - 7490109
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||| ||||| ||| || |||||||| ||||||||| |  | |||||||||| |||||||| ||||||||||||| ||||||||  |||  |||||||    
T  7490241 ttggtcccataaatcttttattgtttactattttggtcttatccgttagtttttaaccttaaatgtctaaggtgaacaaactttataagtgacccaccat 7490142  T
Q  124 agaccttattaaatcttttatttttaaccgtttga 158  Q
    | ||||| || |||||||  |||||||| ||||||    
T  7490141 aaaccttgttgaatcttt--tttttaacggtttga 7490109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 15850661 - 15850572
Alignment:
Q  68 gttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    |||||||||| ||| |||| ||||||||||||||||| |||| |||||||||||||||| |||| || || ||||| |||||||| |||||    
T  15850661 gttagtttttaaccctaaatgtctaaggtgaaccaacattataggtggtccaccatagatcttaatagat-ttttaattttaaccctttga 15850572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 12852978 - 12853090
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    |||||| |||||||||||| | ||||| |||| || | |||  ||||||||||||||  ||||  |||||| ||||||||||| |||||||| ||| | |    
T  12852978 gtttactattttggtcatctccgttagattttaacatcaaaaatctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaatttttgaat 12853077  T
Q  146 tttaaccgtttga 158  Q
    ||||||| |||||    
T  12853078 tttaaccatttga 12853090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 232
Target Start/End: Complemental strand, 42249786 - 42249621
Alignment:
Q  66 ctgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttgannnnnnn 165  Q
    |||||| ||||| |||||||| ||||||||||||||||||| ||  | | || ||||||||  ||||||||| ||||| ||||||||||||||           
T  42249786 ctgttattttttaaccttaaatgtctaaggtgaaccaactt-ataag-gatctaccatagattttattaaattttttaattttaaccgtttgatcttttt 42249689  T
Q  166 nnaaa-tgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaatt 232  Q
      ||| || |||| ||||||||| | |||  |||||||||||||||||||||  |||| |||||||||    
T  42249688 taaaaatgaagattgttggatcacggaggaatctattgtagcttataatgaacaacaaccacctaatt 42249621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 5850495 - 5850536
Alignment:
Q  340 attcattatttttaattaattcatctttaaatcactaataaa 381  Q
    ||||||||||||||||||||| |||||||||||| |||||||    
T  5850495 attcattatttttaattaattaatctttaaatcattaataaa 5850536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 23232330 - 23232375
Alignment:
Q  113 tggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    |||||||||||| |||||||||| ||||||| ||||||||||||||    
T  23232330 tggtccaccataaaccttattaattcttttaattttaaccgtttga 23232375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 3528247 - 3528183
Alignment:
Q  88 gtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaacc 152  Q
    |||||||||||||||  ||||  |||||| ||||||||||| |||||||| ||||| ||||||||    
T  3528247 gtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacc 3528183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 29076940 - 29076992
Alignment:
Q  231 ttttttccctccatct-cttccctatctttcttcttcatccccaaataaaact 282  Q
    |||||| ||||||||| ||||| |||| |||||||||||||||||||||||||    
T  29076940 tttttttcctccatcttcttccttatcgttcttcttcatccccaaataaaact 29076992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 29424628 - 29424524
Alignment:
Q  54 ttttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccg 153  Q
    |||||||| || |||||||||  | || | ||| ||||||| |||||||  ||||  ||||||||| ||||||||||||||||| ||| | ||||||||     
T  29424628 ttttggtcctctctgttagttactaacatcaaatgtctaagatgaaccatgtttaaaggtggtccatcatagaccttattaaatttttaaattttaacct 29424529  T
Q  154 tttga 158  Q
    |||||    
T  29424528 tttga 29424524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 7983677 - 7983628
Alignment:
Q  88 gtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaat 137  Q
    |||||||||||||||  ||||  |||||||||||||||| ||||||||||    
T  7983677 gtctaaggtgaaccatgtttaaaggtggtccaccatagatcttattaaat 7983628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 14714592 - 14714673
Alignment:
Q  54 ttttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaa 135  Q
    |||||||| || | |||||||||| || | ||| |||||||||||||||  ||||  ||||||||||||||  |||||||||    
T  14714592 ttttggtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccatacgccttattaa 14714673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 3532264 - 3532364
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||| ||||| ||| ||||  ||||| ||||| |||||| |||||  ||||| || ||||| || ||||||||||||  ||||  |||||||||||||    
T  3532264 ttggtcacataagtcttttgtcatttactattttagtcatctctgttgatttttaacattaaatgtttaaggtgaaccatatttaaaggtggtccaccat 3532363  T
Q  124 a 124  Q
    |    
T  3532364 a 3532364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 23177766 - 23177878
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    |||||||||||||||| || | |||||||||| || | |||  |||||| |||||||  ||||  | |||| |||| |||| |||||||||| || || |    
T  23177766 gtttaccattttggtcctctccgttagtttttaacataaaaaatctaagatgaaccatatttaaagatggttcaccgtagatcttattaaattttctaat 23177865  T
Q  146 tttaaccgtttga 158  Q
    ||||||| |||||    
T  23177866 tttaaccatttga 23177878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 23589023 - 23589135
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    |||||||||||||||| || | |||||||||| || | |||  |||||| |||||||  ||||  | |||| |||| |||| |||||||||| || || |    
T  23589023 gtttaccattttggtcctctccgttagtttttaacataaaaaatctaagatgaaccatatttaaagatggttcaccgtagatcttattaaattttctaat 23589122  T
Q  146 tttaaccgtttga 158  Q
    ||||||| |||||    
T  23589123 tttaaccatttga 23589135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 46 - 254
Target Start/End: Original strand, 16037 - 16247
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    |||||| ||||| ||| || | |||||||||| |||||||| ||||||| |||||||||||||| | |||||||||||||||||||||||| ||||||||    
T  16037 gtttactattttagtcctctccgttagtttttaaccttaaatgtctaagatgaaccaactttatagatggtccaccatagaccttattaaaccttttatt 16136  T
Q  146 tttaaccgtttgannnnnnnnnaaa-tgtagatcgttggatcatgaaggggtctattgtagcttataatgaagcacaaacacctaattttttccctccat 244  Q
    |||||||||||||         ||| || |||  ||||||||| | || | ||||||||||||| ||||||| ||||||||||||||||||| |||||||    
T  16137 tttaaccgtttgatatttttttaaattggagactgttggatcaagtagagatctattgtagcttgtaatgaaccacaaacacctaatttttttcctccat 16236  T
Q  245 c-tcttcccta 254  Q
    | |||||||||    
T  16237 cttcttcccta 16247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 4117 - 4180
Alignment:
Q  95 gtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    ||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||| ||||||    
T  4117 gtgaaccaactttataggtggtccaccataaaccgtattaaatcttttatttttaactgtttga 4180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 47162 - 47274
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    |||||| ||||||||| || | |||| ||||| || ||||| ||||||||||||  |||||| | ||||||| |||||| || ||||||||| ||||| |    
T  47162 gtttactattttggtcctctccgttaatttttaactttaaatgtctaaggtgaattaactttgtaggtggtctaccataaactttattaaattttttaat 47261  T
Q  146 tttaaccgtttga 158  Q
    |||||||||||||    
T  47262 tttaaccgtttga 47274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1974 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 652 - 540
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    ||||||||||||||||||| | |||||||||| || | |||  ||||||||||||||  ||||  | |||| |||| |||| |||||||||| || || |    
T  652 gtttaccattttggtcatctccgttagtttttaacataaaaaatctaaggtgaaccatatttaaagatggttcaccgtagatcttattaaattttctaat 553  T
Q  146 tttaaccgtttga 158  Q
    ||||||| |||||    
T  552 tttaaccatttga 540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1878 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 622 - 734
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    ||||||||||||||||||| | |||||||||| || | |||  ||||||||||||||  ||||  | |||| |||| |||| |||||||||| || || |    
T  622 gtttaccattttggtcatctccgttagtttttaacataaaaaatctaaggtgaaccatatttaaagatggttcaccgtagatcttattaaattttctaat 721  T
Q  146 tttaaccgtttga 158  Q
    ||||||| |||||    
T  722 tttaaccatttga 734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 9502 - 9390
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    ||||||||||||||||||| | |||||||||| || | |||  ||||||||||||||  ||||  | |||| |||| |||| |||||||||| || || |    
T  9502 gtttaccattttggtcatctccgttagtttttaacataaaaaatctaaggtgaaccatatttaaagatggttcaccgtagatcttattaaattttctaat 9403  T
Q  146 tttaaccgtttga 158  Q
    ||||||| |||||    
T  9402 tttaaccatttga 9390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 39917 - 39813
Alignment:
Q  54 ttttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccg 153  Q
    |||||||| || |||||||||||| || | ||| |||||||||||| ||  ||||  |||||| |||||| |||| |||||||| ||||| ||||||||     
T  39917 ttttggtcctctctgttagtttttaacatcaaaagtctaaggtgaatcatatttaaaggtggttcaccatggaccgtattaaattttttaattttaacca 39818  T
Q  154 tttga 158  Q
    |||||    
T  39817 tttga 39813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2071 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 649 - 590
Alignment:
Q  99 accaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccgtttga 158  Q
    |||||| ||| | |||||||||||||||||||||||||| ||||| ||| ||||||||||    
T  649 accaaccttaagagtggtccaccatagaccttattaaattttttaatttaaaccgtttga 590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 40978 - 41112
Alignment:
Q  24 ttggtctcataactctattgttgtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccat 123  Q
    |||||||||||| |||  ||| ||||||  |||| ||  || |||||||||||| || | ||| |||||||||||||||  ||||  |||||||||||||    
T  40978 ttggtctcataagtcttctgtcgtttactgttttagttctctctgttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccat 41077  T
Q  124 agaccttattaaatcttttatttttaaccgtttga 158  Q
    |  ||||| ||||| ||||  |||||||| |||||    
T  41078 atgccttactaaatttttttattttaaccatttga 41112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 1303 - 1413
Alignment:
Q  46 gtttaccattttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatt 145  Q
    |||||| ||| ||||| || | |||| ||||| |||||||| || |||||||||||||||||||  | | || ||||||||| ||||| ||| ||||| |    
T  1303 gtttacaattgtggtcctctccgttattttttaaccttaaatgtttaaggtgaaccaactttataag-gatctaccatagactttatt-aattttttaat 1400  T
Q  146 tttaaccgtttga 158  Q
    |||||||||||||    
T  1401 tttaaccgtttga 1413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 207814 - 207710
Alignment:
Q  54 ttttggtcatcactgttagtttttcaccttaaacgtctaaggtgaaccaactttatgggtggtccaccatagaccttattaaatcttttatttttaaccg 153  Q
    |||||||| || | |||||||||| || | ||| |||| ||||||||||  ||||  ||||||||||||||  ||||| ||||| ||||| ||||||||     
T  207814 ttttggtcctctccgttagtttttaacatcaaatgtcttaggtgaaccatgtttaaaggtggtccaccatatgccttactaaattttttaattttaacca 207715  T
Q  154 tttga 158  Q
    |||||    
T  207714 tttga 207710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University