View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12085_high_9 (Length: 395)
Name: NF12085_high_9
Description: NF12085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12085_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 1007903 - 1007526
Alignment:
| Q |
1 |
tcagaattgatccataaataaaacttaagttcatctgaacaattcgttttttagtgaagctcgttaaccacttgaacacaattactgtaaagagaaaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1007903 |
tcagaattgatccataaataaaacttaagttcttctaaacaattcgttttttagtgaagctcgttaaccacttaaacacaattactgtaaagagaaaagt |
1007804 |
T |
|
| Q |
101 |
gtttttcattattcaagttgtgaaatacaagtagtagtcacctatttataaacaaggtaacaaaacaactaagctagcttgcaccacaagcaattgtgca |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1007803 |
gtttttcattattcaagttgtgaaatacaagcagtagtcacctatttataaacaaggtaacaaaacaactaagctagcttgcaccacaagcaactgtgca |
1007704 |
T |
|
| Q |
201 |
aagactaactttaaaaacactaaaacatgattaagcttgcatattaacaaactacttaaccctatgaatctctcccttaaactgagcagtctctaaaaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
1007703 |
aagactaactttaaaaacactaaaacatgattaagcttgcatattaacaaactacttaaccctatgaatccctcgcttaaactgagcagtctctaaaaca |
1007604 |
T |
|
| Q |
301 |
gtttatacatggagttagtttggttctttcaagctatccataatgccaagcttagatctcagtctgccacatgcttcc |
378 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1007603 |
atttatacagggagttagtttggttctttcaagctatccataatgccaagcttagatctcagtctgccacatgcttcc |
1007526 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 88 - 378
Target Start/End: Complemental strand, 20545848 - 20545558
Alignment:
| Q |
88 |
taaagagaaaagtgtttttcattattcaagttgtgaaatacaagtagtagtcacctatttataaacaaggtaacaaaacaactaagctagcttgcaccac |
187 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
20545848 |
taaagagaaaagtgtttttcattattcaagttgtgaaatacaagtaatagtcacctatttatagacaaggtaacaaaacaactaagctagtttgcaccac |
20545749 |
T |
|
| Q |
188 |
aagcaattgtgcaaagactaactttaaaaacactaaaacatgattaagcttgcatattaacaaactacttaaccctatgaatctctcccttaaactgagc |
287 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||| |
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| T |
20545748 |
aagcaaatgtgcaaagactaactctaaaaacactaaaacatgattaagcttgcatattaacaaactacttaaccataacaatccctcccttaaactgagc |
20545649 |
T |
|
| Q |
288 |
agtctctaaaacagtttatacatggagttagtttggttctttcaagctatccataatgccaagcttagatctcagtctgccacatgcttcc |
378 |
Q |
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| T |
20545648 |
agtctctaaaacagtttatacaaggagttagtttggttctttcaagctatccataatgccaagcttagatctcagtttgccaaatgcttcc |
20545558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 88 - 264
Target Start/End: Complemental strand, 20541510 - 20541334
Alignment:
| Q |
88 |
taaagagaaaagtgtttttcattattcaagttgtgaaatacaagtagtagtcacctatttataaacaaggtaacaaaacaactaagctagcttgcaccac |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20541510 |
taaagagaaaagtgtttttcattattcaagttgtgaaatacaagtagtagtcacctatttatagacaaggtaacaaaacaactaagctagcttgcaccag |
20541411 |
T |
|
| Q |
188 |
aagcaattgtgcaaagactaactttaaaaacactaaaacatgattaagcttgcatattaacaaactacttaacccta |
264 |
Q |
| |
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|||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20541410 |
aagcaactgtgcaaagacaaactctaaaaacactaaaacatgattaagcttgcatattaacaaactacttaacccta |
20541334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 86 - 378
Target Start/End: Original strand, 40609469 - 40609759
Alignment:
| Q |
86 |
tgtaaagagaaaagtgtttttcattattcaagttgtgaaatacaagtagtagtcacctatttataaacaaggtaacaaaacaactaagctagcttgcacc |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| |||||||||||||||||||| |
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| T |
40609469 |
tgtaaagagaaaagtgtttttcattattcaagttgtgaaatacaagtaatagtcacctatttataga-aaggtaacaaagcaactaagctagcttgcacc |
40609567 |
T |
|
| Q |
186 |
acaagcaattgtgcaaagactaactttaaaaacactaaaacatgattaagcttgcatattaacaaactacttaaccctatgaatctctcccttaaactga |
285 |
Q |
| |
|
||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||| |||||||| |
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| T |
40609568 |
acaagcaattgtgcaaagattaacct-aaaagcactaaaacatgattaagcttgcatattatcaaactacttaaccctaacaatccctcccctaaactga |
40609666 |
T |
|
| Q |
286 |
gcagtctctaaaacagtttatacatggagttagtttggttctttcaagctatccataatgccaagcttagatctcagtctgccacatgcttcc |
378 |
Q |
| |
|
||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
40609667 |
gcaatctctgaaacagtttatacaaggagttagtttggttctttcaagctatccataatgccaagcttagatctcagtttgccaaatgcttcc |
40609759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 86 - 264
Target Start/End: Original strand, 40613800 - 40613971
Alignment:
| Q |
86 |
tgtaaagagaaaagtgtttttcattattcaagttgtgaaatacaagtagtagtcacctatttataaacaaggtaacaaaacaactaagctagcttgcacc |
185 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||||| |||||||||||||||||||| |
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| T |
40613800 |
tgtaaagagaaaagtgtttttcattcttcaagttgtgaaatacaa----tagtcacctatttacgga-aaggtaacaaagcaactaagctagcttgcacc |
40613894 |
T |
|
| Q |
186 |
acaagcaattgtgcaaagactaactttaaaaacactaaaacatgattaagcttgcatattaacaaactacttaacccta |
264 |
Q |
| |
|
||||||||||||||||||| |||| | | |||||||||||||||||||||||| | |||| ||||||||||||||||| |
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| T |
40613895 |
acaagcaattgtgcaaagattaacct--acaacactaaaacatgattaagcttgtacattatcaaactacttaacccta |
40613971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 122 - 264
Target Start/End: Complemental strand, 13754705 - 13754563
Alignment:
| Q |
122 |
gaaatacaagtagtagtcacctatttataaacaaggtaacaaaacaactaagctagcttgcaccacaagcaattgtgcaaagactaactttaaaaacact |
221 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
13754705 |
gaaatacaagtagtagtcacctatttatagacaaggtaacaaaacaactaagctagcttgcaccacaagcaactgtgcaaagactaactttaaaaacact |
13754606 |
T |
|
| Q |
222 |
aaaacatgattaagcttgcatattaacaaactacttaacccta |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13754605 |
aaaacatgattaagcttgcatattaacaaactacttaacccta |
13754563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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