View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12085_low_1 (Length: 1014)
Name: NF12085_low_1
Description: NF12085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12085_low_1 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 606; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 397 - 1014
Target Start/End: Original strand, 38814350 - 38814967
Alignment:
| Q |
397 |
gcagatatccatgagatatcaaaagggaattagcgttgaaatgctctcaatactttctagtgaattatagatcagcttgatattctcttttgtgcaagct |
496 |
Q |
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| T |
38814350 |
gcagatatccatgagatatcaaaagggaattagcgttgaaatgctctcaatactttctagtgaattatagatcagcttgatattctcttttgtgcaagct |
38814449 |
T |
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| Q |
497 |
catttcctcatcaacttatcatcactaactcaacatgctaagtagtaacggtattaaactaaatgaacatatacagatcatacaagaatccatttcagtg |
596 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38814450 |
catttcctcatcaacttatcatcactaactcaacatgctaagtagtaacggtattaaactaaatgaacatatacagatcatacaagaatgcatttcagtg |
38814549 |
T |
|
| Q |
597 |
attgaaaactagttaaaagttgatgaaaataggagcatacacttcttcaggctctcgaacatcaatcaactgtgcctcctccaagaaattgggatcttga |
696 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38814550 |
attgaaaactagttaaaagttgatgaaaataggagcatacacttcttcaggctctcgaacatcaatcaactgtgcctcctccaagaaattgggatcttga |
38814649 |
T |
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| Q |
697 |
aatttcacatgcagctcatcaggttgaatgtctagaagtactggttcttccctgacaattaatggagtaaatttacaaggcatgagaaactcattaaaac |
796 |
Q |
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| T |
38814650 |
aatttcacatgcagctcatcaggttgaatgtctagaagtactggttcttccctgacaattaatggagtaaatttacaaggcatgagaaactcattaaaac |
38814749 |
T |
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| Q |
797 |
aaacaactactatcatcccataaggtgatgttggctaattggatcaaacaatcaattagggttaataaatagccaaatattcaatgaatttcacattgga |
896 |
Q |
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| T |
38814750 |
aaacaactactatcatcccataaggtgatgttggctaattggatcaaacaatcaattagggttaataaatagccaaatattcaatgaatttcacattgga |
38814849 |
T |
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| Q |
897 |
actaaacacatcttatcattcaacttaagaagcatatgcctggaaatacctctcagataaaacttgcagcaagtgccatccaaattgggtcttgcacctt |
996 |
Q |
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| T |
38814850 |
actaaacacatcttatcatccaacttaaaaagcatatgcctggaaatacctctcagataaaacttgcagcaagtgccatccaaattgggtcttgcacctt |
38814949 |
T |
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| Q |
997 |
acaattttgtttaaaggt |
1014 |
Q |
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| T |
38814950 |
acaattttgtttaaaggt |
38814967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 39 - 281
Target Start/End: Original strand, 38813993 - 38814235
Alignment:
| Q |
39 |
gcagctaattcagcttcaatattgaaaatcaaaataaagatgaatgaactgaaacatcaaaaaacaaaggcttctaactattcaaacttagactgctaaa |
138 |
Q |
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| T |
38813993 |
gcagctaattcagcttcaatattgaaaatcaaaataaagatgaatgaactgaaacatcaaaaaacaaaggcttctaactattcaaacttggactgctaaa |
38814092 |
T |
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| Q |
139 |
gttgtgcttaccagaacatatgtatccttttgaagatcaaatttcgaatttatttcaggcccccaggttccaaattgtcgaaggggaagaactgtaaatc |
238 |
Q |
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| T |
38814093 |
gttgtgcttaccagaacatatgtatccttttgaagatcaaatttcgaatttatttcaggcccccaggttccaaattgtcgaaggggaagaactgtaaatc |
38814192 |
T |
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| Q |
239 |
ctggcaaagatgcggtggtcctgtgtatgatgcgagaatcatt |
281 |
Q |
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| T |
38814193 |
ctggcaaagatgcggtggtcctgtgtatgatgcgagaatcatt |
38814235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 621 - 749
Target Start/End: Original strand, 38821032 - 38821160
Alignment:
| Q |
621 |
gaaaataggagcatacacttcttcaggctctcgaacatcaatcaactgtgcctcctccaagaaattgggatcttgaaatttcacatgcagctcatcaggt |
720 |
Q |
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| T |
38821032 |
gaaaataggagcatacacttcttcaggctctcgaacatcaattaactgtgcctccttcgagaagttgggatcttgaagtttcacatgcagctcatcaggt |
38821131 |
T |
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| Q |
721 |
tgaatgtctagaagtactggttcttccct |
749 |
Q |
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||||||||| ||| ||| | ||||||||| |
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| T |
38821132 |
tgaatgtcttgaaatacagattcttccct |
38821160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 118 - 281
Target Start/End: Original strand, 38820573 - 38820736
Alignment:
| Q |
118 |
attcaaacttagactgctaaagttgtgcttaccagaacatatgtatccttttgaagatcaaatttcgaatttatttcaggcccccaggttccaaattgtc |
217 |
Q |
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| T |
38820573 |
attcaaacttggactgctaaagctgtacttacaagaacatatgtattcttttgaagatccaatttggtgtttatttcaggcacccaggttccaaattgaa |
38820672 |
T |
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| Q |
218 |
gaaggggaagaactgtaaatcctggcaaagatgcggtggtcctgtgtatgatgcgagaatcatt |
281 |
Q |
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| T |
38820673 |
ggaggggaagaaccataaatcctggcaaagacgctttgtccctgtgtataatgagagtatcatt |
38820736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 818 - 1014
Target Start/End: Original strand, 38821252 - 38821453
Alignment:
| Q |
818 |
aaggtgatgttggctaattggatcaaacaatcaattagggttaat--aaatagccaaatattcaatgaatttcacattggaactaaacacatcttatcat |
915 |
Q |
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| T |
38821252 |
aaggtggtgttggctaattagatcaaacaatcaataaggatttacgaaaataaccaaatattcaataaatttcccatccgaaagaaacacattttaccat |
38821351 |
T |
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| Q |
916 |
tcaactta---agaagcatatgcctggaaatacctctcagataaaacttgcagcaagtgccatccaaattgggtcttgcaccttacaattttgtttaaag |
1012 |
Q |
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| T |
38821352 |
ccaacttggagaaaaaaatatgtcttgaaatacctttcagataaaacctgcagcaggtgccatccaaattttgtcttgcacattacaactttgtttaaag |
38821451 |
T |
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| Q |
1013 |
gt |
1014 |
Q |
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|| |
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| T |
38821452 |
gt |
38821453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 462 - 522
Target Start/End: Original strand, 38820887 - 38820949
Alignment:
| Q |
462 |
tatagatcagcttgatattctct--tttgtgcaagctcatttcctcatcaacttatcatcact |
522 |
Q |
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| T |
38820887 |
tatagatcagcttgatattgtctattttgtgcaagctcttatcctcatcaacttatcaccact |
38820949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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