View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12085_low_11 (Length: 386)
Name: NF12085_low_11
Description: NF12085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12085_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 43262408 - 43262777
Alignment:
| Q |
1 |
ccgttaatgtgaaggaaccatatgtgtcagccttgcaacatataggtgttaggtttctataatttgagtttgtagatgtgtcaaaatgattttaaattgc |
100 |
Q |
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| T |
43262408 |
ccgttaatgtgaaggaaccacatgtgtcagccttgcaacatataggtgttaggtttctataatttgagtttgtagatgtgtcgaagtgattttaaattgc |
43262507 |
T |
|
| Q |
101 |
tacgattacactggtaaaatattagtaaatgcagctgatgcagctacaattgccaattgcggttgcaaatgtgatgacctataacactattataatgttg |
200 |
Q |
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| T |
43262508 |
tacgattacactggtaaaatattagtaaatgcagctgatgcagctacaattgccaattgcggttgcaaatgtgatgacctataacactattataatgttg |
43262607 |
T |
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| Q |
201 |
ccgtaattgcgactgtagaatgcaatttagaactatggtgtcaaaaaatgttgttcatttggttatatttagcttcattgcagggaatcgaacaacgtcc |
300 |
Q |
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| T |
43262608 |
ccgtaattgcgactgtagaatgcaatttagaactatggtgtcaaaaaatgttgttcatttggttatatttagcttcattgcagggaatcgaacaacgtcc |
43262707 |
T |
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| Q |
301 |
caaaactgagcctgactcgggtgcacttgcggcggcaagaaccgcaagaggcgcgagagagggaattatt |
370 |
Q |
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| T |
43262708 |
caaaactgagcctgactcgggtgcacttgcggcggcaagaaccgcaagaggcgcgagagagggaattatt |
43262777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 239
Target Start/End: Original strand, 2620600 - 2620635
Alignment:
| Q |
204 |
taattgcgactgtagaatgcaatttagaactatggt |
239 |
Q |
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| T |
2620600 |
taattgcgactgtagagtgcaatttagaactatggt |
2620635 |
T |
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