View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12085_low_12 (Length: 383)

Name: NF12085_low_12
Description: NF12085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12085_low_12
NF12085_low_12
[»] chr1 (2 HSPs)
chr1 (10-366)||(7100529-7100870)
chr1 (10-366)||(7580370-7580717)
[»] chr5 (23 HSPs)
chr5 (10-339)||(17984019-17984354)
chr5 (22-366)||(29854419-29854763)
chr5 (22-366)||(30476483-30476827)
chr5 (6-366)||(30520263-30520623)
chr5 (6-366)||(30560603-30560963)
chr5 (22-366)||(29873282-29873626)
chr5 (282-365)||(17417507-17417590)
chr5 (275-366)||(30061480-30061571)
chr5 (275-366)||(30337432-30337523)
chr5 (275-366)||(30750754-30750845)
chr5 (273-354)||(30207642-30207723)
chr5 (275-366)||(30676195-30676286)
chr5 (280-354)||(30241293-30241367)
chr5 (41-163)||(30401388-30401510)
chr5 (273-366)||(30401182-30401275)
chr5 (41-149)||(30207847-30207955)
chr5 (23-149)||(30329496-30329622)
chr5 (6-95)||(30241031-30241120)
chr5 (55-162)||(30675975-30676082)
chr5 (41-163)||(17417341-17417463)
chr5 (131-167)||(30061679-30061715)
chr5 (131-167)||(30484708-30484744)
chr5 (131-167)||(30750953-30750989)
[»] chr4 (3 HSPs)
chr4 (22-355)||(52353078-52353413)
chr4 (89-357)||(13617716-13617987)
chr4 (10-73)||(13617991-13618054)
[»] chr3 (1 HSPs)
chr3 (22-366)||(25292601-25292945)


Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 10 - 366
Target Start/End: Complemental strand, 7100870 - 7100529
Alignment:
Q  10 aagaagcaattaacagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaat 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||      
T  7100870 aagaagcaattaacagaccgctctattcaaatatggctgcagcaactcaaagatgcggtgtatgtgcttgatgatatccttgatgaatgttccatcaa-- 7100773  T
Q  110 ccgctcgacttaagggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatgaaattactagcagactcagtca 209  Q
                 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7100772 -------------gggcttatcctctttcaaaccaaagaatgtcatgtttcgccattacataggcagtaggttgaatgaaattactagcagactcagtca 7100686  T
Q  210 tattgcagaaggtaagaagaattttatgctacgagaaggtgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctttatt 309  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7100685 tattgccgaaggtaagaagaattttatgctacgagaaggtgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctttatt 7100586  T
Q  310 gctgaaccaaaggtgtttggacgagaagatgataaagagaagattgttgactttctt 366  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  7100585 gctgaaccaaagatgtttggacgagaagatgataaagagaagattgttgagtttctt 7100529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 10 - 366
Target Start/End: Original strand, 7580370 - 7580717
Alignment:
Q  10 aagaagcaattaacagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaat 109  Q
    |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||| ||||  |||||||    
T  7580370 aagaagcaattaactgaccgatctattcaaatatggttgcagcaactcaaagatgcggtgtatgtgcttgatgatatccttgatgagtgtttaatcaaat 7580469  T
Q  110 ccgctcgacttaagggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatgaaattactagcagactcagtca 209  Q
    ||  |||||| |||||         |||||||| |||||| ||||||||||| | |||  |||||| ||||||||| || ||| | ||||||||||  ||    
T  7580470 ccagtcgactcaaggg---------tttcaaactaaagaacgtcatgtttcgacgtgatttaggcactaggttgaaagagattgcaagcagactcaacca 7580560  T
Q  210 tattgcagaaggtaagaagaattttatgctacgagaaggtgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctttatt 309  Q
     ||||| |||  |||||| || ||| |  ||||||||||| ||  ||||||  || |||||| |||||||||||| |||||||||||||||||| |||||    
T  7580561 aattgctgaaaataagaacaagtttcttttacgagaaggtattgttgttacagaaaaaccaattgaagtggctgactggcgccaaaccagctccattatt 7580660  T
Q  310 gctgaaccaaaggtgtttggacgagaagatgataaagagaagattgttgactttctt 366  Q
    || ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  7580661 gccgaaccaaaggtgtttggacgagaagatgataaagagaggattgttgagtttctt 7580717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 10 - 339
Target Start/End: Complemental strand, 17984354 - 17984019
Alignment:
Q  10 aagaagcaattaacagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaat 109  Q
    |||||||| || ||||| || ||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||| ||||||||||| |||||||    
T  17984354 aagaagcatttgacagatcgttctattcaaatatggctgcagcaactcaaagatgcggtgtttgtgcttgatgatatcctagatgaatgttcgatcaaat 17984255  T
Q  110 ccgctcgacttaagggcttatcctctt---tcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatgaaattactagcagactcag 206  Q
    || ||| | ||||| | | ||||||||   |||| ||||||||  |||||||||||| ||||||||||||||||||||| || ||| | || ||||||      
T  17984254 ccactcaatttaagagttcatcctctttcatcaatccaaagaacttcatgtttcgccgtgacataggcagtaggttgaaagagattgcaagtagactcga 17984155  T
Q  207 tcatattgcagaaggtaagaagaattttatgctacgagaaggtgttactgttacgcaaca---accaactgaagtggctgaatggcgccaaaccagctcc 303  Q
    | ||||||| ||||||||||||||||||||||||||||||||| ||||||||||| || |   ||||| |||||||||||||||||||||||||||| ||    
T  17984154 ttatattgctgaaggtaagaagaattttatgctacgagaaggtattactgttacggaaaaattaccaagtgaagtggctgaatggcgccaaaccagcccc 17984055  T
Q  304 tttattgctgaaccaaaggtgtttggacgagaagat 339  Q
     ||||||||||| |||| ||||||||||||||||||    
T  17984054 gttattgctgaatcaaaagtgtttggacgagaagat 17984019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 22 - 366
Target Start/End: Complemental strand, 29854763 - 29854419
Alignment:
Q  22 acagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgactta 121  Q
    ||||||| ||||||| |  ||||||| || |||||||||||||| || ||||| || ||||||||||||||||| ||||| ||||| || | || |||||    
T  29854763 acagaccactctattaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaagtctggtcaactta 29854664  T
Q  122 agggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatgaaattactagcagactcagtcatattgcagaagg 221  Q
      || ||| |||||||||||||||||||  |||||||||||||||| || ||||  |||||||| || ||||| || | | |   | ||||||| ||  |    
T  29854663 gaggattaacctctttcaaaccaaagaacatcatgtttcgccatgagatcggcaacaggttgaaagagattacaaggaaattggatgatattgctgatag 29854564  T
Q  222 taagaagaattttatgctacgagaaggtgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctttattgctgaaccaaag 321  Q
    |||||| || ||| | ||||| || |||  || ||||| | ||    ||| |||||| ||||||||||| |||||||||||| ||||||||||||||||     
T  29854563 taagaacaagttttttctacgggagggtactattgttaaggaaagctcaaatgaagtagctgaatggcgtcaaaccagctccattattgctgaaccaaaa 29854464  T
Q  322 gtgtttggacgagaagatgataaagagaagattgttgactttctt 366  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||    
T  29854463 gtgtttggacgagaagatgataaagaaaagattgttgagtttctt 29854419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 22 - 366
Target Start/End: Complemental strand, 30476827 - 30476483
Alignment:
Q  22 acagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgactta 121  Q
    ||||||||||||||| |  ||||||| || |||||||||||||| || ||||| ||||||||||| |||||||||||||||||  ||||   | ||||||    
T  30476827 acagaccgctctattaaggtatggctccaacaactcaaagatgctgtatatgtgcttgatgatattcttgatgaatgttccattgaatctagtagactta 30476728  T
Q  122 agggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatgaaattactagcagactcagtcatattgcagaagg 221  Q
    | | ||  |||| |||||| | ||||||  |  ||||||||| |||||| ||||  |||||||| |||||||| || ||| ||  ||| ||||| ||| |    
T  30476727 aagcctcgtcctgtttcaacctaaagaacattgtgtttcgccgtgacatcggcaaaaggttgaaagaaattacaaggagattcgatcaaattgctgaaag 30476628  T
Q  222 taagaagaattttatgctacgagaaggtgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctttattgctgaaccaaag 321  Q
    |||  | || ||| |  ||||||| |||||   ||||| | ||   |||| |||||| ||||||||||||||||| |||||| ||||||||||||| ||     
T  30476627 taaagacaagtttcttttacgagagggtgtcgttgttagggaaaggccaaatgaagttgctgaatggcgccaaacaagctccattattgctgaacccaaa 30476528  T
Q  322 gtgtttggacgagaagatgataaagagaagattgttgactttctt 366  Q
    ||||||||||||| |||||||| ||||| |||||| || ||||||    
T  30476527 gtgtttggacgagtagatgatagagagaggattgtcgagtttctt 30476483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 6 - 366
Target Start/End: Original strand, 30520263 - 30520623
Alignment:
Q  6 tgagaagaagcaattaacagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatc 105  Q
    ||||||||| ||| ||||||||||||||||  |  ||||||| || ||||||||||||||| | ||  | || |||||||| |||||||| ||||||||     
T  30520263 tgagaagaaacaaataacagaccgctctataaaggtatggcttcaacaactcaaagatgcaatctacatactagatgatattcttgatgagtgttccatt 30520362  T
Q  106 aaatccgctcgacttaagggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatgaaattactagcagactca 205  Q
     ||||| ||||||  |||||| |||| ||||| | |  ||||||| |||||||||||||| | || |||| |||||| || |||||||| | |||| ||     
T  30520363 caatccactcgacaaaagggcatatcttcttttacattaaagaatatcatgtttcgccataaaattggcactaggtttaaagaaattacaaacagattcg 30520462  T
Q  206 gtcatattgcagaaggtaagaagaattttatgctacgagaaggtgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctt 305  Q
     | ||||||| ||| |||| || || ||| | |||| |||| ||||| |||||| | ||    |||   | |||||||||||||| ||||| |||||  |    
T  30520463 atgatattgctgaaagtaaaaacaagtttcttctacaagaatgtgttgctgttagggaaaggtcaatcaatgtggctgaatggcgtcaaactagctctat 30520562  T
Q  306 tattgctgaaccaaaggtgtttggacgagaagatgataaagagaagattgttgactttctt 366  Q
    ||||||||||||||| || | ||| |||||||||||||||||||||||||| || ||||||    
T  30520563 tattgctgaaccaaaagtatatggtcgagaagatgataaagagaagattgtcgagtttctt 30520623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 6 - 366
Target Start/End: Original strand, 30560603 - 30560963
Alignment:
Q  6 tgagaagaagcaattaacagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatc 105  Q
    ||||||||| ||| ||||||||||||||||  |  ||||||| || ||||||||||||||| | ||  | || |||||||| |||||||| ||||||||     
T  30560603 tgagaagaaacaaataacagaccgctctataaaggtatggcttcaacaactcaaagatgcaatctacatactagatgatattcttgatgagtgttccatt 30560702  T
Q  106 aaatccgctcgacttaagggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatgaaattactagcagactca 205  Q
     ||||| ||||||  |||||| |||| ||||| | |  ||||||| |||||||||||||| | || |||| |||||| || |||||||| | |||| ||     
T  30560703 caatccactcgacaaaagggcatatcttcttttacattaaagaatatcatgtttcgccataaaattggcactaggtttaaagaaattacaaacagattcg 30560802  T
Q  206 gtcatattgcagaaggtaagaagaattttatgctacgagaaggtgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctt 305  Q
     | ||||||| ||| |||| || || ||| | |||| |||| ||||| |||||| | ||    |||   | |||||||||||||| ||||| |||||  |    
T  30560803 atgatattgctgaaagtaaaaacaagtttcttctacaagaatgtgttgctgttagggaaaggtcaatcaatgtggctgaatggcgtcaaactagctctat 30560902  T
Q  306 tattgctgaaccaaaggtgtttggacgagaagatgataaagagaagattgttgactttctt 366  Q
    ||||||||||||||| || | ||| |||||||||||||||||||||||||| || ||||||    
T  30560903 tattgctgaaccaaaagtatatggtcgagaagatgataaagagaagattgtcgagtttctt 30560963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 22 - 366
Target Start/End: Complemental strand, 29873626 - 29873282
Alignment:
Q  22 acagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgactta 121  Q
    ||||||||||||||| |  ||||||| || |||||||||||||  || ||||| || ||||||||||||||||| || || ||||| || | || |||||    
T  29873626 acagaccgctctattaaggtatggctacaacaactcaaagatgttgtttatgtgctcgatgatatccttgatgagtgctcgatcaagtctggtcaactta 29873527  T
Q  122 agggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatgaaattactagcagactcagtcatattgcagaagg 221  Q
      || | |  |||||| |||||||| ||  |||||||||||| ||| || ||||  |||||||| || ||||| || ||| |   | ||||||| ||  |    
T  29873526 gaggatcaatctcttttaaaccaaataacatcatgtttcgccttgagatcggcaacaggttgaaagagattacaaggagattggatgatattgctgatag 29873427  T
Q  222 taagaagaattttatgctacgagaaggtgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctttattgctgaaccaaag 321  Q
    |||||| || ||| | ||||| || |||  || ||||| | ||    ||| |||||| ||||||||||| |||||||||||| |||||| |||||||||     
T  29873426 taagaacaagttttttctacgggagggtactattgttaaggaaagctcaaatgaagtagctgaatggcgtcaaaccagctccattattgttgaaccaaaa 29873327  T
Q  322 gtgtttggacgagaagatgataaagagaagattgttgactttctt 366  Q
    || ||||||||||||||||||||||| ||||||||||| ||||||    
T  29873326 gtatttggacgagaagatgataaagaaaagattgttgagtttctt 29873282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 282 - 365
Target Start/End: Original strand, 17417507 - 17417590
Alignment:
Q  282 tgaatggcgccaaaccagctcctttattgctgaaccaaaggtgtttggacgagaagatgataaagagaagattgttgactttct 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| |||||    
T  17417507 tgaatggcgccaaaccagctcctttattgctgaaccaaaggtgtttggacgggaagatgatacaaagaagattgttgagtttct 17417590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 275 - 366
Target Start/End: Complemental strand, 30061571 - 30061480
Alignment:
Q  275 aagtggctgaatggcgccaaaccagctcctttattgctgaaccaaaggtgtttggacgagaagatgataaagagaagattgttgactttctt 366  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| ||||||    
T  30061571 aagtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgagtttctt 30061480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 275 - 366
Target Start/End: Original strand, 30337432 - 30337523
Alignment:
Q  275 aagtggctgaatggcgccaaaccagctcctttattgctgaaccaaaggtgtttggacgagaagatgataaagagaagattgttgactttctt 366  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| ||||||    
T  30337432 aagtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgagtttctt 30337523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 275 - 366
Target Start/End: Complemental strand, 30750845 - 30750754
Alignment:
Q  275 aagtggctgaatggcgccaaaccagctcctttattgctgaaccaaaggtgtttggacgagaagatgataaagagaagattgttgactttctt 366  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||||| |||||||||||||||| ||||||||| ||||||| ||| ||||||    
T  30750845 aagtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgctgagtttctt 30750754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 354
Target Start/End: Complemental strand, 30207723 - 30207642
Alignment:
Q  273 tgaagtggctgaatggcgccaaaccagctcctttattgctgaaccaaaggtgtttggacgagaagatgataaagagaagatt 354  Q
    |||||| || |||||||| ||||| |||||  |||||||||||||||| || ||||| ||||||||||||||||||||||||    
T  30207723 tgaagtagcagaatggcgtcaaactagctctattattgctgaaccaaaagtatttgggcgagaagatgataaagagaagatt 30207642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 275 - 366
Target Start/End: Original strand, 30676195 - 30676286
Alignment:
Q  275 aagtggctgaatggcgccaaaccagctcctttattgctgaaccaaaggtgtttggacgagaagatgataaagagaagattgttgactttctt 366  Q
    |||| |||||| ||||||||||| ||||  ||||||||||| |||| |||||||||||||||| |||| |||| |||||||| || ||||||    
T  30676195 aagtagctgaagggcgccaaaccggctcaattattgctgaatcaaaagtgtttggacgagaagttgatcaagaaaagattgtcgagtttctt 30676286  T

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Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 354
Target Start/End: Original strand, 30241293 - 30241367
Alignment:
Q  280 gctgaatggcgccaaaccagctcctttattgctgaaccaaaggtgtttggacgagaagatgataaagagaagatt 354  Q
    ||||||||||| ||||||||| |  ||||| |||||||||| ||||||||||||||||| |||||| ||||||||    
T  30241293 gctgaatggcgtcaaaccagcgctattattactgaaccaaaagtgtttggacgagaagacgataaaaagaagatt 30241367  T

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Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 163
Target Start/End: Complemental strand, 30401510 - 30401388
Alignment:
Q  41 tatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgacttaagggcttatcctctttcaa 140  Q
    ||||||| || |||||||||||||| || ||||| || ||||||||||||||||| ||||| ||| | || |||||||||   |||| || |||||||||    
T  30401510 tatggctccaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcgatcgagtctgctcgacttggaggctcattctctttcaa 30401411  T
Q  141 accaaagaatgtcatgtttcgcc 163  Q
     ||||||||  || |||||||||    
T  30401410 cccaaagaacatcgtgtttcgcc 30401388  T

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Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 273 - 366
Target Start/End: Complemental strand, 30401275 - 30401182
Alignment:
Q  273 tgaagtggctgaatggcgccaaaccagctcctttattgctgaaccaaaggtgtttggacgagaagatgataaagagaagattgttgactttctt 366  Q
    |||||| | ||||||||| |||| || |||| |||||||| ||||| | |||||||||||| ||||||||||||| |||||| |||| ||||||    
T  30401275 tgaagtagatgaatggcgtcaaatcaactccattattgctaaaccagaagtgtttggacgaaaagatgataaagaaaagatttttgagtttctt 30401182  T

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Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 149
Target Start/End: Complemental strand, 30207955 - 30207847
Alignment:
Q  41 tatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgacttaagggcttatcctctttcaa 140  Q
    ||||||| || |||||||||||||| || ||||| || ||||||||||||||||| || || ||| | || ||||||||||  | || ||| ||||||||    
T  30207955 tatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgctcgatcgagtctgctcgacttattgcctcatcatctttcaa 30207856  T
Q  141 accaaagaa 149  Q
    |||||||||    
T  30207855 accaaagaa 30207847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 30329496 - 30329622
Alignment:
Q  23 cagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgacttaa 122  Q
    |||||||||||||| | |||||||| || ||| |||||||||   | ||||| |||||||||||||||||||| || |  ||| | || | |||| |||     
T  30329496 cagaccgctctattaagatatggcttcaacaaatcaaagatgatatatatgtgcttgatgatatccttgatgagtgcttgatcgagtctggtcgaattag 30329595  T
Q  123 gggcttatcctctttcaaaccaaagaa 149  Q
     |||| |||||||||||||||||||||    
T  30329596 aggctcatcctctttcaaaccaaagaa 30329622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 30241031 - 30241120
Alignment:
Q  6 tgagaagaagcaattaacagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatga 95  Q
    ||||||||| ||| | |||||| |||||||| |  |||||||||| |||||||||||||  || ||||| || |||||||||||||||||    
T  30241031 tgagaagaaacaagtcacagactgctctattaaggtatggctgcaacaactcaaagatgttgtttatgtgctcgatgatatccttgatga 30241120  T

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Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 162
Target Start/End: Original strand, 30675975 - 30676082
Alignment:
Q  55 ctcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgacttaagggcttatcctctttcaaaccaaagaatgtca 154  Q
    ||||||||||| || ||||| || ||||||||||||||||| | ||| ||||| || | || |||||  || | ||||||| |||||||||||||  |||    
T  30675975 ctcaaagatgctgtttatgtgctcgatgatatccttgatgagtattcaatcaagtctggtcaacttagaggatcatcctctctcaaaccaaagaacatca 30676074  T
Q  155 tgtttcgc 162  Q
    ||||||||    
T  30676075 tgtttcgc 30676082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 17417341 - 17417463
Alignment:
Q  41 tatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgacttaagggcttatcctctttcaa 140  Q
    ||||||| || |||||||||||||  || ||||| || |||||||| |||||||| || || ||| | || | ||| ||||  |||| ||||| ||||||    
T  17417341 tatggcttcaacaactcaaagatgttgtttatgtgctagatgatattcttgatgagtgctcaatcgagtctggtcggcttagaggctcatcctatttcaa 17417440  T
Q  141 accaaagaatgtcatgtttcgcc 163  Q
    |||||||||  |||| |||||||    
T  17417441 accaaagaacatcatatttcgcc 17417463  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 30061715 - 30061679
Alignment:
Q  131 cctctttcaaaccaaagaatgtcatgtttcgccatga 167  Q
    |||||||||||||||||||  ||||||||||||||||    
T  30061715 cctctttcaaaccaaagaacatcatgtttcgccatga 30061679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 30484744 - 30484708
Alignment:
Q  131 cctctttcaaaccaaagaatgtcatgtttcgccatga 167  Q
    |||||||||||||||||||  ||||||||||||||||    
T  30484744 cctctttcaaaccaaagaacatcatgtttcgccatga 30484708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 30750989 - 30750953
Alignment:
Q  131 cctctttcaaaccaaagaatgtcatgtttcgccatga 167  Q
    |||||||||||||||||||  ||||||||||||||||    
T  30750989 cctctttcaaaccaaagaacatcatgtttcgccatga 30750953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 22 - 355
Target Start/End: Complemental strand, 52353413 - 52353078
Alignment:
Q  22 acagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgactta 121  Q
    ||||||||||||||| || ||||||| ||||||||||||||||| || || ||||| ||||||||||||||||||||||| ||||||||   ||||||||    
T  52353413 acagaccgctctattaaagtatggcttcagcaactcaaagatgctgtttacgttctcgatgatatccttgatgaatgttcgatcaaatctagtcgactta 52353314  T
Q  122 agggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatgaaattactagcagactcagtcatattgcagaagg 221  Q
     ||| ||||| || ||||||||||| ||| |  ||||||| ||||| || || |  || ||||| |||||||| || ||| ||  |||  |||| ||| |    
T  52353313 tgggtttatcgtcattcaaaccaaaaaatattgtgtttcgtcatgatattggaaacagattgaaagaaattacaaggagattcgatcaagttgctgaaag 52353214  T
Q  222 taagaagaattttatgctacgagaagg---tgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctttattgctgaacca 318  Q
     ||||| || ||| | |||||||| ||   ||  ||||||| | ||    |||||||| | |||||||||||||||||||||||| || || |||||||     
T  52353213 gaagaacaagtttcttctacgagagggtactggaactgtta-ggaaagctcaactgaaatagctgaatggcgccaaaccagctccatttttactgaaccg 52353115  T
Q  319 aaggtgtttggacgagaagatgataaagagaagattg 355  Q
    ||  | ||||||||  |||| ||||||||||||||||    
T  52353114 aaaatctttggacggaaagaagataaagagaagattg 52353078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 89 - 357
Target Start/End: Complemental strand, 13617987 - 13617716
Alignment:
Q  89 ttgatgaatgttccatcaaatccgctcgacttaagggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatga 188  Q
    ||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| |||| |  ||| || |  |||||||||||| |||||||||||  |    
T  13617987 ttgatgaatgttccatcaaatccactcgacttaagggcttgtccactttcaaactaaaggacatcaagtatttccatgacataggaagtaggttgaaaaa 13617888  T
Q  189 aattactagcagactcagtcatattgcagaaggtaagaagaattttatg-ctacgagaaggtgttactgttacgcaaca--accaactgaagtggctgaa 285  Q
     ||| | |||| | |   ||| |||||  || ||||||| || ||| |  ||| |||||||| |||||||||   || |  ||||| |||||||| ||||    
T  13617887 gattgcaagcaaaattgatcaaattgctaaaagtaagaacaagtttctttctatgagaaggtattactgttagagaaaattaccaattgaagtggttgaa 13617788  T
Q  286 tggcgccaaaccagctcctttattgctgaaccaaaggtgtttggacgagaagatgataaagagaagattgtt 357  Q
    ||| ||||||| | ||||  |||||||||| ||||||||||||||||| ||||| |||||||||||||||||    
T  13617787 tggtgccaaacgatctccactattgctgaatcaaaggtgtttggacgataagataataaagagaagattgtt 13617716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 13618054 - 13617991
Alignment:
Q  10 aagaagcaattaacagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatg 73  Q
    ||||||||||||| || | |||||||| |||||||||| || |||||| |||||||| ||||||    
T  13618054 aagaagcaattaagagtctgctctattaaaatatggctccaacaactcgaagatgcaatgtatg 13617991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 22 - 366
Target Start/End: Original strand, 25292601 - 25292945
Alignment:
Q  22 acagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgactta 121  Q
    ||||| ||||||||| |  ||||||| || |||||||||||||  || ||||| || ||||||||||||||||| || |  ||||||||   ||||||||    
T  25292601 acagatcgctctattaaggtatggctacaacaactcaaagatgttgtatatgtgctcgatgatatccttgatgagtgattgatcaaatctagtcgactta 25292700  T
Q  122 agggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatgaaattactagcagactcagtcatattgcagaagg 221  Q
      |||| |||||||||||||||||||||  ||||||||| |||| |||| ||||  | |||||| || ||||| || ||| |   | ||||||| | |      
T  25292701 gaggctcatcctctttcaaaccaaagaacatcatgtttcaccattacattggcaacaagttgaaagagattacaaggagattggatgatattgctgcaac 25292800  T
Q  222 taagaagaattttatgctacgagaaggtgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctttattgctgaaccaaag 321  Q
    |||||| || ||| | || ||| | ||||  ||||||| | ||    |||||||||| ||||||| ||||||||| || ||  ||||||| ||||||||     
T  25292801 taagaacaagtttcttcttcgacagggtggaactgttagggaaagctcaactgaagtagctgaatagcgccaaactagttctattattgccgaaccaaaa 25292900  T
Q  322 gtgtttggacgagaagatgataaagagaagattgttgactttctt 366  Q
    || |||||||||||||||||||||||||||| ||| || ||||||    
T  25292901 gtatttggacgagaagatgataaagagaagactgtcgagtttctt 25292945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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