View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12085_low_13 (Length: 371)
Name: NF12085_low_13
Description: NF12085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12085_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 358
Target Start/End: Complemental strand, 36290575 - 36290236
Alignment:
| Q |
19 |
cctttgacattgattgtcaagaagaacggtgttcctgatcttaccatggttgatcttccaggtatcacacgtgtacctgttcatggtcaacctgataata |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36290575 |
cctttgacattgattgtcaagaagaacggtgttcctgatcttaccatggttgatcttccaggtatcacacgtgtacctgttcatggtcaacctgataata |
36290476 |
T |
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| Q |
119 |
tctatgatcagattaaagatattattatggagtatataactcctgaagaaagtattatcttgaatgtcctttctgctactgttgattttacaacttgtga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36290475 |
tctatgatcagattaaagatattattatggagtatataactcctgaagaaagtattatctcgaatgtcctttctgctactgttgattttacaacttgtga |
36290376 |
T |
|
| Q |
219 |
gtctattaggatgtcacaaatggttgataaaactggtttgaggacacttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaaggtt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36290375 |
gtctattaggatgtcacaaatggttgataaaactggtttgaggacacttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaaggtt |
36290276 |
T |
|
| Q |
319 |
actgctgatgatgttaacatcggtctaggttatgtctgtg |
358 |
Q |
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| T |
36290275 |
accgctgatgatgttaacatcggtctaggttatgtctgtg |
36290236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 23 - 338
Target Start/End: Complemental strand, 36313054 - 36312739
Alignment:
| Q |
23 |
tgacattgattgtcaagaagaacggtgttcctgatcttaccatggttgatcttccaggtatcacacgtgtacctgttcatggtcaacctgataatatcta |
122 |
Q |
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|||| |||||||| |||||||| || |||||||| ||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||| || || |
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| T |
36313054 |
tgactttgattgtgaagaagaatggcgttcctgaccttacaatggttgatcttccaggtataactcgtgttcctgttcatggtcaacctgataacattta |
36312955 |
T |
|
| Q |
123 |
tgatcagattaaagatattattatggagtatataactcctgaagaaagtattatcttgaatgtcctttctgctactgttgattttacaacttgtgagtct |
222 |
Q |
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|||||||||||| |||||||| ||||| ||||||||||||||||| || |||||| ||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
36312954 |
tgatcagattaaggatattatcatggactatataactcctgaagagagcattatcctgaatgttctttctgctactgttgattttagtacttgtgagtct |
36312855 |
T |
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| Q |
223 |
attaggatgtcacaaatggttgataaaactggtttgaggacacttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaaggttactg |
322 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| | |||||||| ||||| || |||||||| |||||||| ||||||||||| || |||| |
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| T |
36312854 |
attaggatgtcacagatggttgataaaactggtttgaggacattagctgttgtaacaaaggctgataaatcacctgaaggtttgttggagaaagtaactg |
36312755 |
T |
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| Q |
323 |
ctgatgatgttaacat |
338 |
Q |
| |
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|||||||||||||||| |
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| T |
36312754 |
ctgatgatgttaacat |
36312739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 163 - 333
Target Start/End: Complemental strand, 33579845 - 33579675
Alignment:
| Q |
163 |
gaagaaagtattatcttgaatgtcctttctgctactgttgattttacaacttgtgagtctattaggatgtcacaaatggttgataaaactggtttgagga |
262 |
Q |
| |
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|||||||| |||||||||||||| |||||||||||| ||||||| | ||||||||||| | ||||||||| ||| ||||||||||||||||||||| |
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| T |
33579845 |
gaagaaagcattatcttgaatgttctttctgctactattgatttctctacttgtgagtcattaaggatgtcagaaactgttgataaaactggtttgaggt |
33579746 |
T |
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| Q |
263 |
cacttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaaggttactgctgatgatgtt |
333 |
Q |
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||||||||| | |||| || ||||||||| |||||||||||| ||||| |||||||||||||||||| |
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| T |
33579745 |
cacttgctgctacttcaaaggctcataaatctcttgaaggattgtttgagaaagttactgctgatgatgtt |
33579675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 33579949 - 33579866
Alignment:
| Q |
96 |
tgttcatggtcaacctgataatatctatgatcagattaaagatattattatggagtatataactcctgaagaaagtattatctt |
179 |
Q |
| |
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||||||| ||||| |||||||| |||||||| ||| |||||||||||||||||| |||| || |||||||| |||||||| |
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| T |
33579949 |
tgttcattttcaacatgataatagttatgatcaaattgaagatattattatggagtttatacctatggaagaaagcattatctt |
33579866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 163 - 333
Target Start/End: Original strand, 15997153 - 15997323
Alignment:
| Q |
163 |
gaagaaagtattatcttgaatgtcctttctgctactgttgattttacaacttgtgagtctattaggatgtcacaaatggttgataaaactggtttgagga |
262 |
Q |
| |
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|||||||| |||||||||||||| |||||||||||| ||||||| | ||||||||||| | ||||||||| ||| ||||||||||||| ||||||| |
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| T |
15997153 |
gaagaaagcattatcttgaatgttctttctgctactattgatttctctacttgtgagtcattaaggatgtcagaaactgttgataaaactgatttgaggt |
15997252 |
T |
|
| Q |
263 |
cacttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaaggttactgctgatgatgtt |
333 |
Q |
| |
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||||||||| | |||| || ||||||||| |||||||||||| ||||| |||||||||||||||||| |
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| T |
15997253 |
cacttgctgctacttcaaaggctcataaatctcttgaaggattgtttgagaaagttactgctgatgatgtt |
15997323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 15997057 - 15997118
Alignment:
| Q |
96 |
tgttcatggtcaacctgataatatctatgatcagattaaagatattattatggagtatataa |
157 |
Q |
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||||||| ||||| |||||||| |||||||| ||| |||||||||||||||||| ||||| |
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| T |
15997057 |
tgttcattttcaacatgataatagttatgatcaaattgaagatattattatggagtttataa |
15997118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 30575787 - 30575823
Alignment:
| Q |
297 |
tgaaggattgttggagaaggttactgctgatgatgtt |
333 |
Q |
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|||||||||||| ||||| |||||||||||||||||| |
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| T |
30575787 |
tgaaggattgtttgagaaagttactgctgatgatgtt |
30575823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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