View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12085_low_14 (Length: 341)
Name: NF12085_low_14
Description: NF12085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12085_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 5465289 - 5465531
Alignment:
| Q |
19 |
atgttgttattttcaatccacactttcatacattcagatcattggtggtggtgatgcatgacattgcggttgttcaatcaaatagttcacattcacgcgt |
118 |
Q |
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| T |
5465289 |
atgttgttattttcaatccacactttcatacattcagatcattggt---ggtgatgcatgacattgcggttgttcaatcaaatagttcacattcacgcgt |
5465385 |
T |
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| Q |
119 |
tctgaacatttgcgacaactcattgatgacattgttgttgttcatcaagtcatcgatgttccgaatgcgtgatcacgtggacataatattcgtggtcaac |
218 |
Q |
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| T |
5465386 |
tctgaacatttccgacaactcattgttgactttgctgttgttcatcaagtcatcgatgttccgaatgcgtgatcacgtggacataatattcgtggtcaac |
5465485 |
T |
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| Q |
219 |
tgttaacttcattcctcccataaaaagaggcctgcctgcccctaac |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5465486 |
tgttaacttcattcctcccataaaaagaggcctgcctgcccctaac |
5465531 |
T |
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