View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12085_low_15 (Length: 333)

Name: NF12085_low_15
Description: NF12085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12085_low_15
NF12085_low_15
[»] chr2 (3 HSPs)
chr2 (1-312)||(40996819-40997131)
chr2 (203-267)||(40996789-40996853)
chr2 (163-227)||(4653625-4653689)
[»] chr1 (2 HSPs)
chr1 (137-227)||(3621000-3621090)
chr1 (162-266)||(2887497-2887602)
[»] chr8 (2 HSPs)
chr8 (162-230)||(12563222-12563290)
chr8 (151-227)||(28932344-28932420)
[»] chr4 (5 HSPs)
chr4 (155-227)||(24015964-24016036)
chr4 (166-226)||(29969262-29969322)
chr4 (163-227)||(40656265-40656329)
chr4 (162-226)||(50945897-50945961)
chr4 (162-222)||(54259313-54259373)
[»] chr3 (3 HSPs)
chr3 (137-227)||(33460261-33460351)
chr3 (137-227)||(51160779-51160869)
chr3 (164-266)||(17508659-17508763)
[»] chr7 (1 HSPs)
chr7 (162-227)||(25828516-25828581)


Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 40997131 - 40996819
Alignment:
Q  1 ccacaaaaacattgtttttaagagcttttattttaagtgctttcaagttccatttctactaataggtttttctttctttcattccttcttgnnnnnnn-g 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |    
T  40997131 ccacaaaaacattgtttttaagagcttttattttaagtgctttcaagttccatttctactaataggtttttctttctttcattccttcttgttttttttg 40997032  T
Q  100 catgttttatccatcgaagctatgtcggacatactatatttttgtcacaacaaatgttataacaacattaattgtgagagtgattatttagaagcggttg 199  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40997031 catgttttatccatcgaagctatgtcgggcatactatatttttgtcacaacaaatgttataacaacattaattgtgagagtgattatttagaagcggttg 40996932  T
Q  200 aactgtttgttgttggtcgtgatcatactttcatgcttatgcttctggcatcattatattagagatgcggcggttgaatgtttgttgttggtcgcgatca 299  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40996931 aactgtttgttgttggtcgtgatcataccttcatgcttatgcttctggcatcattatattagagatgcggcagttgaatgtttgttgttggtcgcgatca 40996832  T
Q  300 taccttcatgctt 312  Q
    |||||||||||||    
T  40996831 taccttcatgctt 40996819  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 203 - 267
Target Start/End: Complemental strand, 40996853 - 40996789
Alignment:
Q  203 tgtttgttgttggtcgtgatcatactttcatgcttatgcttctggcatcattatattagagatgc 267  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||| ||||||    
T  40996853 tgtttgttgttggtcgcgatcataccttcatgcttatgcttctggcatcatcatattaaagatgc 40996789  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 4653625 - 4653689
Alignment:
Q  163 aacattaattgtgagagtgattatttagaagcggttgaactgtttgttgttggtcgtgatcatac 227  Q
    ||||||| |||||||||||||| ||| ||||| ||||| ||| || ||| |||||||||||||||    
T  4653625 aacattatttgtgagagtgattgtttggaagcagttgacctgattattgatggtcgtgatcatac 4653689  T

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Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 3621090 - 3621000
Alignment:
Q  137 atttttgtcacaacaaatgttataacaacattaattgtgagagtgattatttagaagcggttgaactgtttgttgttggtcgtgatcatac 227  Q
    ||||||||| ||||||| | ||||||||||||| ||||||||||| ||  || |||||| ||||  |||||||||||||||||||||||||    
T  3621090 atttttgtcgcaacaaaggctataacaacattatttgtgagagtggttgcttggaagcgtttgagatgtttgttgttggtcgtgatcatac 3621000  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 266
Target Start/End: Original strand, 2887497 - 2887602
Alignment:
Q  162 caacattaattgtgagagtgattatttagaagcggttgaactgtttgttgttggtcgtgatcatactttcatgcttatgcttctggcatcatt-atatta 260  Q
    |||||||| ||| ||||||| || ||| ||||| ||||| ||| || ||| || |||||||||||||| ||  |||||||| ||| |||| || ||||||    
T  2887497 caacattatttgcgagagtggttgtttggaagcagttgacctgattattgctgatcgtgatcatacttgcacacttatgctactgtcatccttcatatta 2887596  T
Q  261 gagatg 266  Q
    ||||||    
T  2887597 gagatg 2887602  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 12563222 - 12563290
Alignment:
Q  162 caacattaattgtgagagtgattatttagaagcggttgaactgtttgttgttggtcgtgatcatacttt 230  Q
    |||||||| |||||||||||||| ||| ||||  ||||| ||| || ||||||||||||||||||||||    
T  12563222 caacattatttgtgagagtgattgtttggaagtagttgacctgattattgttggtcgtgatcatacttt 12563290  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 28932420 - 28932344
Alignment:
Q  151 aaatgttataacaacattaattgtgagagtgattatttagaagcggttgaactgtttgttgttggtcgtgatcatac 227  Q
    |||||||||  |||||||| |||||||||||||| ||| ||||| ||||| ||| || ||| ||| |||||||||||    
T  28932420 aaatgttatgtcaacattatttgtgagagtgattgtttggaagcagttgacctgattattgctggccgtgatcatac 28932344  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 24015964 - 24016036
Alignment:
Q  155 gttataacaacattaattgtgagagtgattatttagaagcggttgaactgtttgttgttggtcgtgatcatac 227  Q
    ||||||||||||||| |||||||||||||| ||| ||||| |||||| | ||||||| | || ||||||||||    
T  24015964 gttataacaacattatttgtgagagtgattctttggaagcagttgaaatctttgttgcttgttgtgatcatac 24016036  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 29969322 - 29969262
Alignment:
Q  166 attaattgtgagagtgattatttagaagcggttgaactgtttgttgttggtcgtgatcata 226  Q
    |||| |||||||||||||| ||| ||||||||| || ||||||||| | ||||||||||||    
T  29969322 attatttgtgagagtgattgtttggaagcggttaaattgtttgttgctcgtcgtgatcata 29969262  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 40656329 - 40656265
Alignment:
Q  163 aacattaattgtgagagtgattatttagaagcggttgaactgtttgttgttggtcgtgatcatac 227  Q
    ||||||| |||||||||||||| |||  |||| ||||| ||| || ||| |||||||||||||||    
T  40656329 aacattatttgtgagagtgattgtttgaaagcagttgacctgattattgctggtcgtgatcatac 40656265  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 50945897 - 50945961
Alignment:
Q  162 caacattaattgtgagagtgattatttagaagcggttgaactgtttgttgttggtcgtgatcata 226  Q
    |||||||| |||||| ||||||| ||| ||| || |||| ||| || ||||||||||||||||||    
T  50945897 caacattatttgtgaaagtgattgtttggaaccgattgacctgattattgttggtcgtgatcata 50945961  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 54259313 - 54259373
Alignment:
Q  162 caacattaattgtgagagtgattatttagaagcggttgaactgtttgttgttggtcgtgat 222  Q
    |||||||| |||||||||||||| ||| ||||| ||||| |||||| ||| |||| |||||    
T  54259313 caacattatttgtgagagtgattgtttggaagcagttgacctgtttattgctggttgtgat 54259373  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 33460351 - 33460261
Alignment:
Q  137 atttttgtcacaacaaatgttataacaacattaattgtgagagtgattatttagaagcggttgaactgtttgttgttggtcgtgatcatac 227  Q
    ||||||||||||||||| | |||||| |||||| | || |||||||||  ||  ||| |||||| ||| ||||||||| ||||||||||||    
T  33460351 atttttgtcacaacaaaggctataaccacattattcgttagagtgattgcttgaaagtggttgacctgattgttgttgatcgtgatcatac 33460261  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 51160779 - 51160869
Alignment:
Q  137 atttttgtcacaacaaatgttataacaacattaattgtgagagtgattatttagaagcggttgaactgtttgttgttggtcgtgatcatac 227  Q
    ||||||||| |||| || | ||||||||||||| |||||||||  |||  ||  ||||||||||  |||||||||||||| ||||||||||    
T  51160779 atttttgtcgcaaccaaggctataacaacattatttgtgagagatatttcttgaaagcggttgagttgtttgttgttggttgtgatcatac 51160869  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 17508659 - 17508763
Alignment:
Q  164 acattaattgtgagagtgattatttagaagcggttgaactgtttgttgttggtcgtgatcatac-tttcatgcttatgcttctggcatcatt-atattag 261  Q
    |||||| ||||||||||| || ||| ||||| |||||  || || ||| ||||||||||||||| || ||| |||||||| ||| |||| || |||||||    
T  17508659 acattatttgtgagagtgcttgtttggaagcagttgacttgattattgatggtcgtgatcatacgttgcatacttatgctactgacatccttcatattag 17508758  T
Q  262 agatg 266  Q
    |||||    
T  17508759 agatg 17508763  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 25828581 - 25828516
Alignment:
Q  162 caacattaattgtgagagtgattatttagaagcggttgaactgtttgttgttggtcgtgatcatac 227  Q
    ||||||||  ||||||||||||| |||  |||| ||||| ||| ||||||||||||||||||||||    
T  25828581 caacattatatgtgagagtgattgtttgaaagcagttgacctgattgttgttggtcgtgatcatac 25828516  T

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