View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12085_low_16 (Length: 288)
Name: NF12085_low_16
Description: NF12085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12085_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 26 - 277
Target Start/End: Original strand, 4256669 - 4256920
Alignment:
| Q |
26 |
atatagaactatattcatcaatcatcgttgatgaattaagcaaatcaaaatacatcaaggtgaaacattatgccaaatagaaaatttgttaggagcattg |
125 |
Q |
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| T |
4256669 |
atatagaactatattcatcaatcatcgttgatgaattaagcaaatcaaaatacatcaaggtgaaacattatgccaaatagaaaatttgttaggagcattg |
4256768 |
T |
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| Q |
126 |
cgatgcagaatgtcaaattacaaacataatggcatatgctttttcaaagaagtttgaagtgttgagatcataacttaaagagttatgatgtctttttgat |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4256769 |
cgatgcagaatgtcaaattacaaacataatggcatatgctttttcaaagaagtttgaagtgttgagatcataacttaaagagttatgatgtctttttgat |
4256868 |
T |
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| Q |
226 |
ggttgtgtgtttcttaatttggctctgaaaaatgaataaaattacactattt |
277 |
Q |
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| T |
4256869 |
ggttgtgtgtttcttaatttggctctgaaaaatgaataaaattacactattt |
4256920 |
T |
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