View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12085_low_18 (Length: 252)
Name: NF12085_low_18
Description: NF12085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12085_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 32267061 - 32266852
Alignment:
| Q |
1 |
aatgaggtttgtgcattctcatcatcatcattataatcatcannnnnnnnnnnnnnnnnnaaccacattggaacaaaatgaaatgatcaaattctgcaaa |
100 |
Q |
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| T |
32267061 |
aatgaggtttgtgcattctcatcatcatcattataatcatcatgctgctactgctgctgcaaccacattggaacaaaatgaaatgatcaaattctgcaaa |
32266962 |
T |
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| Q |
101 |
gaatgtgggaaaggttttccttcattgaaagcactttgtggacacatggcttctcattctgagaaagagaaaaagatcaacaaggctatgatggaggagg |
200 |
Q |
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| T |
32266961 |
gaatgtgggaaaggttttccttcattgaaagcactttgtggacacatggcttctcattctgagaaagagaaaaagatcaacaaggctatgatggaggagg |
32266862 |
T |
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| Q |
201 |
atactcaatc |
210 |
Q |
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|||||||||| |
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| T |
32266861 |
atactcaatc |
32266852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 19301476 - 19301397
Alignment:
| Q |
89 |
aaattctgcaaagaatgtgggaaaggttttccttcattgaaagcactttgtggacacatggcttctcattctgagaaaga |
168 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||| ||| ||||||||||| |
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| T |
19301476 |
aaattctgcaaagaatgtggaaaaggttttccatcattgaaagcactgtgtggtcacatggcttgtcactctgagaaaga |
19301397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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