View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12085_low_4 (Length: 540)

Name: NF12085_low_4
Description: NF12085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12085_low_4
NF12085_low_4
[»] chr7 (21 HSPs)
chr7 (18-525)||(31103026-31103533)
chr7 (18-523)||(31140387-31140892)
chr7 (18-523)||(31058584-31059089)
chr7 (18-516)||(31184118-31184613)
chr7 (237-523)||(31153402-31153688)
chr7 (18-197)||(31159545-31159724)
chr7 (18-180)||(31241665-31241827)
chr7 (38-513)||(31215834-31216303)
chr7 (35-164)||(14606660-14606789)
chr7 (35-164)||(16025837-16025966)
chr7 (35-164)||(15664469-15664598)
chr7 (35-164)||(16173313-16173442)
chr7 (41-155)||(15676310-15676424)
chr7 (35-164)||(16103645-16103774)
chr7 (35-165)||(17849283-17849413)
chr7 (392-452)||(16173031-16173091)
chr7 (35-164)||(17825325-17825454)
chr7 (215-255)||(16103554-16103594)
chr7 (383-496)||(15664811-15664924)
chr7 (336-452)||(14606378-14606494)
chr7 (336-452)||(16025555-16025671)
[»] scaffold0289 (4 HSPs)
scaffold0289 (35-164)||(4795-4924)
scaffold0289 (35-164)||(13628-13757)
scaffold0289 (389-496)||(5143-5250)
scaffold0289 (389-496)||(13976-14083)
[»] chr1 (19 HSPs)
chr1 (43-154)||(15002873-15002984)
chr1 (43-154)||(14531980-14532091)
chr1 (43-154)||(15011766-15011877)
chr1 (354-496)||(15037449-15037591)
chr1 (40-125)||(14504777-14504862)
chr1 (356-437)||(14532287-14532368)
chr1 (332-452)||(15017589-15017709)
chr1 (362-437)||(14483240-14483315)
chr1 (43-154)||(15017881-15017992)
chr1 (43-154)||(15033218-15033329)
chr1 (362-496)||(14504412-14504546)
chr1 (43-93)||(14521859-14521909)
chr1 (43-95)||(15037844-15037896)
chr1 (43-167)||(15041340-15041464)
chr1 (362-437)||(14468292-14468367)
chr1 (334-465)||(15032913-15033044)
chr1 (40-125)||(14483546-14483631)
chr1 (356-437)||(15002596-15002677)
chr1 (356-437)||(15011489-15011570)
[»] scaffold0400 (3 HSPs)
scaffold0400 (332-437)||(13277-13382)
scaffold0400 (43-154)||(13554-13665)
scaffold0400 (43-125)||(7283-7365)
[»] scaffold0365 (3 HSPs)
scaffold0365 (332-437)||(13920-14025)
scaffold0365 (43-154)||(14197-14308)
scaffold0365 (43-125)||(7927-8009)
[»] chr5 (1 HSPs)
chr5 (435-497)||(37027196-37027258)
[»] chr8 (4 HSPs)
chr8 (387-443)||(17027372-17027428)
chr8 (43-95)||(17028665-17028717)
chr8 (387-443)||(17557864-17557920)
chr8 (43-95)||(17559101-17559153)


Alignment Details
Target: chr7 (Bit Score: 492; Significance: 0; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 18 - 525
Target Start/End: Complemental strand, 31103533 - 31103026
Alignment:
Q  18 cttcatagtcaagattgagaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31103533 cttcatagtcaagattgagaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgac 31103434  T
Q  118 acctttaacaacattcaccctcttttcccaatcaaatgcaatggcttgtttttcattgtttagtatttgatctaagcttccaccttccatgaacttgtaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31103433 acctttaacaacattcaccctcttttcccaatcaaatgcaatggcttgtttttcattgtttagtatttgatctaagcttccaccttccatgaacttgtaa 31103334  T
Q  218 accaaaaatgagaacttagaatgtgagcaaaatccatgaagctttatgatgttcctgtgtttgattcctgtcaaggtttcaatctcactcgtaaaagact 317  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31103333 actaaaaatgagaacttagaatgtgagcaaaatccatgaagctttatgatattcctgtgtttgattcctgtcaaggtttcaatctcactcgtaaaagact 31103234  T
Q  318 tcgaactgaaaaatgacatttcttcatctgttactaaatgaagcttcttcacagcaacaaccaaccctgtaggcaactctgccttgtaaacatttccttg 417  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31103233 tcgaactgaaaaatgacatttcttcatctcttactaaatgaagcttcttcacagcaacaaccaatcctgtaggcaactctgccttgtaaacatttccttg 31103134  T
Q  418 acttccaactccaatgagatatttgtcatcaaaattctcagtagcttcaatgatattttcaaacatcattttcccatcatggctccaaatcgaaaatagt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31103133 acttccaactccaatgagatatttgtcatcaaaattctcagtagcttcaatgatattttcaaacatcattttcccatcatggctccaaatcgaaaatagt 31103034  T
Q  518 actccctt 525  Q
    ||||||||    
T  31103033 actccctt 31103026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 523
Target Start/End: Complemental strand, 31140892 - 31140387
Alignment:
Q  18 cttcatagtcaagattgagaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgac 117  Q
    |||||||||||||||| ||||| | ||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||    
T  31140892 cttcatagtcaagattaagaaggacattcttgcttgatatatcacgatgaataataggaggagaacaatcatgatgcaagtaggacaaagcattggccac 31140793  T
Q  118 acctttaacaacattcaccctcttttcccaatcaaatgcaatggcttgtttttcattgtttagtatttgatctaagcttccaccttccatgaacttgtaa 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||||| |||||| |||||||||| ||||||| ||||||||||    
T  31140792 acctttaacaacattcaccctcttttcccaatcaaatgcagtggcttgtgtatcactgtttagcatttgacctaagcttcctccttccaagaacttgtaa 31140693  T
Q  218 accaaaaatgagaacttagaatgtgagcaaaatccatgaagctttatgatgttcctgtgtttgattcctgtcaaggtttcaatctcactcgtaaaagact 317  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||    
T  31140692 accaaaaatgagaatttagaatgtgagcaaaatccatgaagctttatgatgttcctgtgtctgattcctgacaaggtttcaatctcactcataaaagact 31140593  T
Q  318 tcgaactgaaaaatgacatttcttcatctgttactaaatgaagcttcttcacagcaacaaccaaccctgtaggcaactctgccttgtaaacatttccttg 417  Q
    |||||||||||  ||| |||||||||||||||| || ||| ||||||||||||||||||||||  |||| ||  ||||||||||||||||||||||||||    
T  31140592 tcgaactgaaatgtgagatttcttcatctgttattatatgtagcttcttcacagcaacaaccatacctgaagataactctgccttgtaaacatttccttg 31140493  T
Q  418 acttccaactccaatgagatatttgtcatcaaaattctcagtagcttcaatgatattttcaaacatcattttcccatcatggctccaaatcgaaaatagt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  31140492 acttccaactccaatgagatatttgtcatcaaaattctcagtagcttcaatgatattttcaaacatcattttcccatcatgactccaaatggaaaatagt 31140393  T
Q  518 actccc 523  Q
    ||||||    
T  31140392 actccc 31140387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 523
Target Start/End: Complemental strand, 31059089 - 31058584
Alignment:
Q  18 cttcatagtcaagattgagaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgac 117  Q
    |||||||||||||||| ||||||| ||||||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||    
T  31059089 cttcatagtcaagattaagaagaacattcttgcttgatatatcgcgatgaattataggaggcgagcaatcatgatgcaagtaggacaaagcattggccac 31058990  T
Q  118 acctttaacaacattcaccctcttttcccaatcaaatgcaatggcttgtttttcattgtttagtatttgatctaagcttccaccttccatgaacttgtaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31058989 acctttaacaacattcaccctcttttcccaatcaaatgcaacggcttgtgtgtcattgtttagtatttgatctaagcttccaccttccaagaacttgtaa 31058890  T
Q  218 accaaaaatgagaacttagaatgtgagcaaaatccatgaagctttatgatgttcctgtgtttgattcctgtcaaggtttcaatctcactcgtaaaagact 317  Q
    |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||    
T  31058889 accaaaaacgagaatttagaatgtgagcaaaatccatgaagttttatgatgttcctatgtttaattcctgtcaaggtttcaatctcactcataaaagact 31058790  T
Q  318 tcgaactgaaaaatgacatttcttcatctgttactaaatgaagcttcttcacagcaacaaccaaccctgtaggcaactctgccttgtaaacatttccttg 417  Q
    | ||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||   |  ||||||||||||||||||||||||||    
T  31058789 ttgaactgaaacatgacatttcttcatctgttactagatgtagcttcttcacagcaacaaccaaaccttctgataactctgccttgtaaacatttccttg 31058690  T
Q  418 acttccaactccaatgagatatttgtcatcaaaattctcagtagcttcaatgatattttcaaacatcattttcccatcatggctccaaatcgaaaatagt 517  Q
    |||||| ||||||| |||||||||||||||||||||  ||||||||||||| |||||||||||||||||||| |||||||| |||||||| |||||||||    
T  31058689 acttccgactccaacgagatatttgtcatcaaaatttgcagtagcttcaataatattttcaaacatcatttttccatcatgactccaaatggaaaatagt 31058590  T
Q  518 actccc 523  Q
    ||||||    
T  31058589 actccc 31058584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 516
Target Start/End: Complemental strand, 31184613 - 31184118
Alignment:
Q  18 cttcatagtcaagattgagaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgac 117  Q
    |||||||||||||||||| ||||| ||| || ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  31184613 cttcatagtcaagattgataagaacatttttactcgatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcgac 31184514  T
Q  118 acctttaacaacattcaccctcttttcccaatcaaatgcaatggcttgtttttcattgtttagtatttgatctaagcttccaccttccatgaacttgtaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31184513 acctttaacaacattcaccctcttttcccaatcaaatgcaatggcttgtttttcattgtttattatttgatctaagcttccaccttccatgaacttgtaa 31184414  T
Q  218 accaaaaatgagaacttagaatgtgagcaaaatccatgaagctttatgatgttcctgtgtttgattcctgtcaaggtttcaatctcactcgtaaaagact 317  Q
    ||||||||||||||||||||||||  |||| |||| ||||| || |||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  31184413 accaaaaatgagaacttagaatgttggcaatatccttgaaggttgatgatgttcctgtgtttgattcctctcaatgtttcaatctcactcgtaaaagact 31184314  T
Q  318 tcgaactgaaaaatgacatttcttcatctgttactaaatgaagcttcttcaca---------gcaacaaccaaccctgtaggcaactctgccttgtaaac 408  Q
    |            ||||||||| ||||||||||||||||||||||||||||||         ||| ||||| | ||  | | |||||||||||| |||||    
T  31184313 t------------tgacatttcatcatctgttactaaatgaagcttcttcacagcatagatggcaccaaccgaaccgctggacaactctgccttataaac 31184226  T
Q  409 atttccttgacttccaactccaatgagatatttgtcatcaaaattctcagtagcttcaatgatattttcaaacatcattttcccatcatggctccaaatc 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||| |||||||||||||||| |||||| |     
T  31184225 atttccttgacttccaactccaatgagatatttgtcatcaaaattctcagtagcttgaataatactttcaaacgtcattttcccatcatgactccaattt 31184126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 237 - 523
Target Start/End: Complemental strand, 31153688 - 31153402
Alignment:
Q  237 aatgtgagcaaaatccatgaagctttatgatgttcctgtgtttgattcctgtcaaggtttcaatctcactcgtaaaagacttcgaactgaaaaatgacat 336  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||  ||| ||    
T  31153688 aatgtgagcaaaatccatgaagctttatgatgttcctgtgtctgattcctgacaaggtttcaatctcactcataaaagacttcgaactgaaatgtgagat 31153589  T
Q  337 ttcttcatctgttactaaatgaagcttcttcacagcaacaaccaaccctgtaggcaactctgccttgtaaacatttccttgacttccaactccaatgaga 436  Q
    |||||||||||||| || ||| ||||||||||||||||||||||  |||| ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  31153588 ttcttcatctgttattatatgtagcttcttcacagcaacaaccatacctgaagataactctgccttgtaaacatttccttgacttccaactccaatgaga 31153489  T
Q  437 tatttgtcatcaaaattctcagtagcttcaatgatattttcaaacatcattttcccatcatggctccaaatcgaaaatagtactccc 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  31153488 tatttgtcatcaaaattctcagtagcttcaatgatattttcaaacatcattttcccatcatgactccaaatggaaaatagtactccc 31153402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 31159724 - 31159545
Alignment:
Q  18 cttcatagtcaagattgagaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgac 117  Q
    |||||||||||||||| ||||| | |||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||| ||    
T  31159724 cttcatagtcaagattaagaaggacattcttgctcgatatatcacgatgaacaataggaggagaacaatcatgatgcaagtaggacaaagcattggccac 31159625  T
Q  118 acctttaacaacattcaccctcttttcccaatcaaatgcaatggcttgtttttcattgtttagtatttgatctaagcttc 197  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||||| |||||| |||||||||    
T  31159624 acctttaacaacattcaccctcttttcccaatcaaatgcagtggcttgtgtatcactgtttagcatttgacctaagcttc 31159545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 31241827 - 31241665
Alignment:
Q  18 cttcatagtcaagattgagaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgac 117  Q
    |||||||||||||||| ||||| | |||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||| ||    
T  31241827 cttcatagtcaagattaagaaggacattcttgctcgatatatcacgatgaacaataggaggagaacaatcatgatgcaagtaggacaaagcattggccac 31241728  T
Q  118 acctttaacaacattcaccctcttttcccaatcaaatgcaatggcttgtttttcattgtttag 180  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| | ||| |||||||    
T  31241727 acctttaacaacattcaccctcttttcccaatcaaatgcagtggcttgtgtatcactgtttag 31241665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 38 - 513
Target Start/End: Complemental strand, 31216303 - 31215834
Alignment:
Q  38 agaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgacacctttaacaacattcaccc 137  Q
    |||| ||||||||| ||||| ||||| ||||  || ||||||  ||| |||||||||| ||||||||||||||  || |||||| |||||| ||||||||    
T  31216303 agaacattcttgcttgatatgtcacggtgaactattggaggtatgcagtcatgatgcatgtaggacaaagcatcagccacacctctaacaatattcaccc 31216204  T
Q  138 tcttttcccaatcaaatgcaatggcttgtttttcattgtttagtatttga-tctaagcttccaccttccatgaacttgtaaaccaaaaatgagaacttag 236  Q
    ||||||||||||||||||||||||||||| | ||||||||||  |||||| || ||| |||||||||||| |||||| |||||||||||||||||  | |    
T  31216203 tcttttcccaatcaaatgcaatggcttgtgtgtcattgtttaacatttgagtcaaag-ttccaccttccaagaacttataaaccaaaaatgagaatcttg 31216105  T
Q  237 aatgtgagcaaaatccatgaagctttatgatgttcctgtgtttgattcctgtcaaggtttcaatctcactcgtaaaagacttcgaactgaaaaatgacat 336  Q
    |||||  |||| ||||||  |||||||||||||| |  ||  ||||| ||||||| | || ||| ||| |  | |||| |||     ||| |   ||| |    
T  31216104 aatgtcggcaatatccatagagctttatgatgttacgatgcctgatttctgtcaaagcttgaatttca-ttttcaaaggctt-----tgatattggacct 31216011  T
Q  337 ttcttcatctgttactaaatgaagcttcttcacagcaacaaccaaccctgtaggcaactctgccttgtaaacatttccttgacttccaactccaatgaga 436  Q
    |||  ||||| ||    ||||||| |||||||| ||||||||||   ||| || |||||  ||||||||||||  |||||  | ||| |||||||||||     
T  31216010 ttccccatctattctcgaatgaagtttcttcactgcaacaaccatatctgcagacaacttagccttgtaaacagatccttcccctcccactccaatgagg 31215911  T
Q  437 tatttgtcatcaaaattctcagtagcttcaatgatattttcaaacatcattttcccatcatggctccaaatcgaaaa 513  Q
    ||||  ||||||||||| |  ||||||||||| |||||||||||||||||||| |||||||| ||||| || |||||    
T  31215910 tattcatcatcaaaattgttggtagcttcaattatattttcaaacatcatttttccatcatgactccatatggaaaa 31215834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 35 - 164
Target Start/End: Complemental strand, 14606789 - 14606660
Alignment:
Q  35 agaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgacacctttaacaacattca 134  Q
    ||||||||||||||||| |||||||| ||||||| ||| ||||| |||||||||||||||| |||| | ||||||||||| ||| ||||||  |||||||    
T  14606789 agaagaatattcttgcttgatatatctcgatgaacaattggaggcgagcaatcatgatgcatgtagcataaagcattggctacatctttaatgacattca 14606690  T
Q  135 ccctcttttcccaatcaaatgcaatggctt 164  Q
    ||||||| | ||||||||||||||| ||||    
T  14606689 ccctcttattccaatcaaatgcaattgctt 14606660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 35 - 164
Target Start/End: Complemental strand, 16025966 - 16025837
Alignment:
Q  35 agaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgacacctttaacaacattca 134  Q
    ||||||||||||||||| |||||||| ||||||| ||| ||||| |||||||||||||||| |||| | ||||||||||| ||| ||||||  |||||||    
T  16025966 agaagaatattcttgcttgatatatctcgatgaacaattggaggcgagcaatcatgatgcatgtagcataaagcattggctacatctttaatgacattca 16025867  T
Q  135 ccctcttttcccaatcaaatgcaatggctt 164  Q
    ||||||| | ||||||||||||||| ||||    
T  16025866 ccctcttattccaatcaaatgcaattgctt 16025837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 35 - 164
Target Start/End: Original strand, 15664469 - 15664598
Alignment:
Q  35 agaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgacacctttaacaacattca 134  Q
    ||||||||||||||||| |||||||| ||||||| ||| ||||| | ||||||||| ||||  ||| | |||||||| || | | |||||| ||||||||    
T  15664469 agaagaatattcttgcttgatatatctcgatgaacaattggaggggtgcaatcatggtgcatatagcataaagcattcgctatatctttaataacattca 15664568  T
Q  135 ccctcttttcccaatcaaatgcaatggctt 164  Q
    ||||||||| |||| |||||||||| ||||    
T  15664569 ccctctttttccaaccaaatgcaattgctt 15664598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 35 - 164
Target Start/End: Complemental strand, 16173442 - 16173313
Alignment:
Q  35 agaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgacacctttaacaacattca 134  Q
    ||||||||||||||||| |||||||| ||||||| ||| ||||| ||||||||||| ||||  ||| | |||||||| || ||| ||||||  |||||||    
T  16173442 agaagaatattcttgcttgatatatctcgatgaacaattggaggcgagcaatcatggtgcatatagcataaagcattagctacatctttaatgacattca 16173343  T
Q  135 ccctcttttcccaatcaaatgcaatggctt 164  Q
    ||| ||||| ||||| ||||||||| ||||    
T  16173342 cccgctttttccaattaaatgcaattgctt 16173313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 41 - 155
Target Start/End: Original strand, 15676310 - 15676424
Alignment:
Q  41 atattcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgacacctttaacaacattcaccctct 140  Q
    ||||||||||| |||||||| ||||||| ||| ||||||||||||||||| ||||  ||| | |||||||| || ||| |||||| ||||||||||| ||    
T  15676310 atattcttgcttgatatatctcgatgaacaattggaggtgagcaatcatggtgcatatagtataaagcattagctacatctttaataacattcacccgct 15676409  T
Q  141 tttcccaatcaaatg 155  Q
    | | |||||||||||    
T  15676410 tattccaatcaaatg 15676424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 164
Target Start/End: Complemental strand, 16103774 - 16103645
Alignment:
Q  35 agaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgacacctttaacaacattca 134  Q
    ||||||||||||||||| |||||||| |  |||| ||| ||||| |||||||||||||||| |||| | |||||||| || ||| ||||||  |||||||    
T  16103774 agaagaatattcttgcttgatatatctctgtgaacaattggaggcgagcaatcatgatgcatgtagcataaagcattagctacatctttaaggacattca 16103675  T
Q  135 ccctcttttcccaatcaaatgcaatggctt 164  Q
    | ||||| | ||||||||| ||||| ||||    
T  16103674 ctctcttgttccaatcaaacgcaattgctt 16103645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 35 - 165
Target Start/End: Complemental strand, 17849413 - 17849283
Alignment:
Q  35 agaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgacacctttaacaacattca 134  Q
    ||||| ||||||||||| |||||||| ||||||| ||| ||||||||||||| ||||||||  ||  | | |||||| || ||| ||||||  |||||||    
T  17849413 agaagtatattcttgcttgatatatctcgatgaacaatcggaggtgagcaatgatgatgcatataacatagagcattagctacatctttaatgacattca 17849314  T
Q  135 ccctcttttcccaatcaaatgcaatggcttg 165  Q
    ||| ||| | ||||||||||||||| |||||    
T  17849313 cccgcttattccaatcaaatgcaattgcttg 17849283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 452
Target Start/End: Complemental strand, 16173091 - 16173031
Alignment:
Q  392 aactctgccttgtaaacatttccttgacttccaactccaatgagatatttgtcatcaaaat 452  Q
    |||||||| ||||||||| ||||||| | |||||||||||| |||||||||||||||||||    
T  16173091 aactctgctttgtaaacacttccttgccctccaactccaataagatatttgtcatcaaaat 16173031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 164
Target Start/End: Original strand, 17825325 - 17825454
Alignment:
Q  35 agaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgacacctttaacaacattca 134  Q
    ||||| ||||||||||| |||||||| ||||||| ||| ||||||||||||| ||||||||  ||  | | |||||| || | | ||||||   ||||||    
T  17825325 agaagtatattcttgcttgatatatctcgatgaacaattggaggtgagcaatgatgatgcatataacatacagcattagctatatctttaatggcattca 17825424  T
Q  135 ccctcttttcccaatcaaatgcaatggctt 164  Q
    ||||||| | ||| ||||||||||| ||||    
T  17825425 ccctcttattccagtcaaatgcaattgctt 17825454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 16103594 - 16103554
Alignment:
Q  215 taaaccaaaaatgagaacttagaatgtgagcaaaatccatg 255  Q
    |||||||||||||| |||| |||||||||||||||||||||    
T  16103594 taaaccaaaaatgaaaactgagaatgtgagcaaaatccatg 16103554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 496
Target Start/End: Original strand, 15664811 - 15664924
Alignment:
Q  383 cctgtaggcaactctgccttgtaaacatttccttgacttccaactccaatgagatatttgtcatcaaaattctcagtagcttcaatgatattttcaaaca 482  Q
    ||||| ||||||| ||| ||||||||| |||||||   |||  ||||||||||||  ||||||||||| |  || || |||||||| || || ||| |||    
T  15664811 cctgtgggcaactttgctttgtaaacacttccttgcgctcctgctccaatgagatgcttgtcatcaaactcttccgttgcttcaataatgttctcataca 15664910  T
Q  483 tcattttcccatca 496  Q
     |||||||||||||    
T  15664911 ccattttcccatca 15664924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 336 - 452
Target Start/End: Complemental strand, 14606494 - 14606378
Alignment:
Q  336 tttcttcatctgttactaaatgaagcttcttcacagcaacaaccaaccctgtaggcaactctgccttgtaaacatttccttgacttccaactccaatgag 435  Q
    ||||| ||| || |||| |||| ||||| ||||||||||| ||    |||||  |||||| ||| ||||| ||| |||| || | |||||||||||||||    
T  14606494 tttctccatttgctactgaatggagctttttcacagcaactacttgacctgtgtgcaactttgctttgtagacacttccatgccctccaactccaatgag 14606395  T
Q  436 atatttgtcatcaaaat 452  Q
    || ||| ||||||||||    
T  14606394 atgtttttcatcaaaat 14606378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 336 - 452
Target Start/End: Complemental strand, 16025671 - 16025555
Alignment:
Q  336 tttcttcatctgttactaaatgaagcttcttcacagcaacaaccaaccctgtaggcaactctgccttgtaaacatttccttgacttccaactccaatgag 435  Q
    ||||| ||| || |||| |||| ||||| ||||||||||| ||    |||||  |||||| ||| ||||| ||| |||| || | |||||||||||||||    
T  16025671 tttctccatttgctactgaatggagctttttcacagcaactacttgacctgtgtgcaactttgctttgtagacacttccatgccctccaactccaatgag 16025572  T
Q  436 atatttgtcatcaaaat 452  Q
    || ||| ||||||||||    
T  16025571 atgtttttcatcaaaat 16025555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 54; Significance: 9e-22; HSPs: 4)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 35 - 164
Target Start/End: Original strand, 4795 - 4924
Alignment:
Q  35 agaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgacacctttaacaacattca 134  Q
    ||||||||||||||||| |||||||| ||||||| ||| ||||| | ||||||||| ||||  ||| | |||||||| || | | |||||| ||||||||    
T  4795 agaagaatattcttgcttgatatatctcgatgaacaattggaggggtgcaatcatggtgcatatagcataaagcattcgctatatctttaataacattca 4894  T
Q  135 ccctcttttcccaatcaaatgcaatggctt 164  Q
    ||||||||| |||| |||||||||| ||||    
T  4895 ccctctttttccaaccaaatgcaattgctt 4924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 35 - 164
Target Start/End: Original strand, 13628 - 13757
Alignment:
Q  35 agaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgacacctttaacaacattca 134  Q
    ||||||||||||||||| |||||||| ||||||| ||| ||||| | ||||||||| ||||  ||| | |||||||| || | | |||||| ||||||||    
T  13628 agaagaatattcttgcttgatatatctcgatgaacaattggaggggtgcaatcatggtgcatatagcataaagcattcgctatatctttaataacattca 13727  T
Q  135 ccctcttttcccaatcaaatgcaatggctt 164  Q
    ||||||||| |||| |||||||||| ||||    
T  13728 ccctctttttccaaccaaatgcaattgctt 13757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 496
Target Start/End: Original strand, 5143 - 5250
Alignment:
Q  389 ggcaactctgccttgtaaacatttccttgacttccaactccaatgagatatttgtcatcaaaattctcagtagcttcaatgatattttcaaacatcattt 488  Q
    ||||||||||| ||||||||| |||||||   ||| | |||||||||||  ||||||||||| |  || || |||||||| || || ||| ||| |||||    
T  5143 ggcaactctgctttgtaaacacttccttgcgctcctagtccaatgagatgcttgtcatcaaactcttctgtggcttcaataatgttctcatacaccattt 5242  T
Q  489 tcccatca 496  Q
    ||||||||    
T  5243 tcccatca 5250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 496
Target Start/End: Original strand, 13976 - 14083
Alignment:
Q  389 ggcaactctgccttgtaaacatttccttgacttccaactccaatgagatatttgtcatcaaaattctcagtagcttcaatgatattttcaaacatcattt 488  Q
    ||||||||||| ||||||||| |||||||   ||| | |||||||||||  ||||||||||| |  || || |||||||| || || ||| ||| |||||    
T  13976 ggcaactctgctttgtaaacacttccttgcgctcctagtccaatgagatgcttgtcatcaaactcttctgtggcttcaataatgttctcatacaccattt 14075  T
Q  489 tcccatca 496  Q
    ||||||||    
T  14076 tcccatca 14083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 43 - 154
Target Start/End: Complemental strand, 15002984 - 15002873
Alignment:
Q  43 attcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgacacctttaacaacattcaccctcttt 142  Q
    ||||||||| |||||||| ||||||| ||||||||| || |||||||||||||  ||| | |||||||| || ||| ||||||  | ||||||||||||     
T  15002984 attcttgctggatatatctcgatgaacaataggaggggaacaatcatgatgcagatagcataaagcattagctacatctttaatgatattcaccctctta 15002885  T
Q  143 tcccaatcaaat 154  Q
    | ||||||||||    
T  15002884 ttccaatcaaat 15002873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 154
Target Start/End: Original strand, 14531980 - 14532091
Alignment:
Q  43 attcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgacacctttaacaacattcaccctcttt 142  Q
    ||||||||| |||||||| ||||||| ||||||||||||||| |||||||| |  ||| | |||||||| || | | ||||||  |||||||||||| |     
T  14531980 attcttgctggatatatctcgatgaacaataggaggtgagcagtcatgatgtagatagcataaagcattagctatatctttaatgacattcaccctccta 14532079  T
Q  143 tcccaatcaaat 154  Q
    | ||||||||||    
T  14532080 ttccaatcaaat 14532091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 154
Target Start/End: Complemental strand, 15011877 - 15011766
Alignment:
Q  43 attcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgacacctttaacaacattcaccctcttt 142  Q
    ||||||||| |||||||| ||||||| ||||||||| ||||| ||||||||||  ||| | || ||||| || | | |||||| || ||||||||||||     
T  15011877 attcttgctggatatatctcgatgaacaataggaggcgagcagtcatgatgcagatagaataaggcattagctatatctttaataatattcaccctctta 15011778  T
Q  143 tcccaatcaaat 154  Q
    | ||||||||||    
T  15011777 ttccaatcaaat 15011766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 496
Target Start/End: Complemental strand, 15037591 - 15037449
Alignment:
Q  354 aatgaagcttcttcacagcaacaaccaaccctgtaggcaactctgccttgtaaacatttccttgacttccaactccaatgagatatttgtcatcaaaatt 453  Q
    ||||||| ||||||||||| |||||    ||||| ||||||||||| |||||||||||||| || | |||||| ||||||||||  ||||  |||||||     
T  15037591 aatgaagtttcttcacagctacaacttgacctgtgggcaactctgctttgtaaacatttccatgtcctccaaccccaatgagatgcttgttgtcaaaatc 15037492  T
Q  454 ctcagtagcttcaatgatattttcaaacatcattttcccatca 496  Q
     ||||| ||||| || || || ||| ||| |||||| ||||||    
T  15037491 ttcagtggcttcgataatgttctcatacaccattttgccatca 15037449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 14504862 - 14504777
Alignment:
Q  40 aatattcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgacacctttaa 125  Q
    ||||||||| ||||||||||| ||||||| ||| | |||||||| ||||||||||| |||| | |||||||| || ||| ||||||    
T  14504862 aatattcttactcgatatatcgcgatgaacaattgcaggtgagcgatcatgatgcatgtagtataaagcattagctacatctttaa 14504777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 437
Target Start/End: Original strand, 14532287 - 14532368
Alignment:
Q  356 tgaagcttcttcacagcaacaaccaaccctgtaggcaactctgccttgtaaacatttccttgacttccaactccaatgagat 437  Q
    ||||| |||||||||||||||||    ||||||||||||||||| ||||||||| |||| || | |||||| ||||||||||    
T  14532287 tgaagtttcttcacagcaacaacttgacctgtaggcaactctgctttgtaaacacttccatgccctccaaccccaatgagat 14532368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 452
Target Start/End: Complemental strand, 15017709 - 15017589
Alignment:
Q  332 gacatttcttcatctgttactaaatgaagcttcttcacagcaacaaccaaccctgtaggcaactctgccttgtaaacatttccttgacttccaactccaa 431  Q
    ||||||||||||| |  || ||||||||| ||||||||||| |||||    |||| |||||||||||| ||||||||| || | || | |||||| ||||    
T  15017709 gacatttcttcattttgtaataaatgaagtttcttcacagctacaacttgacctgaaggcaactctgctttgtaaacacttgcatgtcctccaaccccaa 15017610  T
Q  432 tgagatatttgtcatcaaaat 452  Q
    |||||| |||||  |||||||    
T  15017609 tgagatgtttgttgtcaaaat 15017589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 437
Target Start/End: Complemental strand, 14483315 - 14483240
Alignment:
Q  362 ttcttcacagcaacaaccaaccctgtaggcaactctgccttgtaaacatttccttgacttccaactccaatgagat 437  Q
    ||||||||||| ||||||   ||||||||||||||||| ||||||||| |||| || | |||||| ||||||||||    
T  14483315 ttcttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccaatgagat 14483240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 43 - 154
Target Start/End: Complemental strand, 15017992 - 15017881
Alignment:
Q  43 attcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgacacctttaacaacattcaccctcttt 142  Q
    ||||||||| |||||||| |||||||  |||||||| || |||||||||||||  ||| | || ||||| || | | |||||| || ||||||||||||     
T  15017992 attcttgctggatatatctcgatgaactataggaggggaacaatcatgatgcagatagcataaggcattagctatatctttaataatattcaccctctta 15017893  T
Q  143 tcccaatcaaat 154  Q
    | ||||||||||    
T  15017892 ttccaatcaaat 15017881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 43 - 154
Target Start/End: Complemental strand, 15033329 - 15033218
Alignment:
Q  43 attcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgacacctttaacaacattcaccctcttt 142  Q
    ||||||||| |||||||| ||||||| ||| | |||||| |||||||||||||  ||| | |||||||| || | | |||||| ||||| ||||||| |     
T  15033329 attcttgctggatatatcgcgatgaacaattgaaggtgaacaatcatgatgcatatagcataaagcattagctatatctttaataacatccaccctccta 15033230  T
Q  143 tcccaatcaaat 154  Q
    | ||||||||||    
T  15033229 ttccaatcaaat 15033218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 496
Target Start/End: Complemental strand, 14504546 - 14504412
Alignment:
Q  362 ttcttcacagcaacaaccaaccctgtaggcaactctgccttgtaaacatttccttgacttccaactccaatgagatatttgtcatcaaaattctcagtag 461  Q
    ||||||||||| ||||||   ||||||||||||||||| ||||||||| |||| || | |||||| || ||||||| |||||  ||||| |  || || |    
T  14504546 ttcttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgttgtcaaactcttctgtgg 14504447  T
Q  462 cttcaatgatattttcaaacatcattttcccatca 496  Q
    |||| |  ||||||||| ||| |||||| ||||||    
T  14504446 cttctacaatattttcatacaccatttttccatca 14504412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 14521859 - 14521909
Alignment:
Q  43 attcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatg 93  Q
    ||||||||| |||||||| ||||||| ||||||||||||||| ||||||||    
T  14521859 attcttgctggatatatctcgatgaacaataggaggtgagcagtcatgatg 14521909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 15037896 - 15037844
Alignment:
Q  43 attcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgca 95  Q
    ||||||||| |||||||| ||||||| ||||||||| || |||||||||||||    
T  15037896 attcttgctggatatatctcgatgaacaataggaggggaacaatcatgatgca 15037844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 15041464 - 15041340
Alignment:
Q  43 attcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgacacctttaacaacattcaccctcttt 142  Q
    ||||||||| |||||||| ||||||| ||||||||| || ||||||||||| |  ||| | |||||||| || | | ||||||  |||||||||||  |     
T  15041464 attcttgctggatatatctcgatgaacaataggaggggaacaatcatgatgtagatagcataaagcattagctatatctttaatgacattcacccttcta 15041365  T
Q  143 tcccaatcaaatgcaatggcttgtt 167  Q
    | |||||||||| || | |||||||    
T  15041364 ttccaatcaaattcactagcttgtt 15041340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 437
Target Start/End: Complemental strand, 14468367 - 14468292
Alignment:
Q  362 ttcttcacagcaacaaccaaccctgtaggcaactctgccttgtaaacatttccttgacttccaactccaatgagat 437  Q
    ||||||||||| |||||    ||||||||||||||||| ||||||||| |||| || | |||||| ||||||||||    
T  14468367 ttcttcacagctacaacttgacctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccaatgagat 14468292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 465
Target Start/End: Complemental strand, 15033044 - 15032913
Alignment:
Q  334 catttcttcatctgttactaaatgaagcttcttcacagcaacaaccaaccctgtaggcaactctgccttgtaaacatttccttgacttccaactccaatg 433  Q
    ||||||||||| |  || | ||||||| ||||||||||| |||||    ||||| ||||||||||| ||||||||| |||| || | |||||| |||| |    
T  15033044 catttcttcattttgtaatgaatgaagtttcttcacagctacaacttgacctgtgggcaactctgctttgtaaacacttccatgtcctccaaccccaagg 15032945  T
Q  434 agatatttgtcatcaaaattctcagtagcttc 465  Q
    ||||  ||||| |||||||  ||||| |||||    
T  15032944 agatgcttgtcgtcaaaatcttcagtggcttc 15032913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 14483631 - 14483546
Alignment:
Q  40 aatattcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgacacctttaa 125  Q
    ||||||||| || |||||||| |||||||  || | |||||||| ||||||||||| |||| | |||||||| || ||| ||||||    
T  14483631 aatattcttactggatatatcgcgatgaactattgaaggtgagcgatcatgatgcatgtagtataaagcattagctacatctttaa 14483546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 437
Target Start/End: Complemental strand, 15002677 - 15002596
Alignment:
Q  356 tgaagcttcttcacagcaacaaccaaccctgtaggcaactctgccttgtaaacatttccttgacttccaactccaatgagat 437  Q
    ||||| ||||||||||| |||||    ||||||||||  ||||| |||||||||||||| || | |||||| ||||||||||    
T  15002677 tgaagtttcttcacagctacaacttgacctgtaggcagttctgctttgtaaacatttccatgtcctccaaccccaatgagat 15002596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 437
Target Start/End: Complemental strand, 15011570 - 15011489
Alignment:
Q  356 tgaagcttcttcacagcaacaaccaaccctgtaggcaactctgccttgtaaacatttccttgacttccaactccaatgagat 437  Q
    ||||| ||||||||||| |||||    ||||||||||  ||||| |||||||||||||| || | |||||| ||||||||||    
T  15011570 tgaagtttcttcacagctacaacttgacctgtaggcagttctgctttgtaaacatttccatgtcctccaaccccaatgagat 15011489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 437
Target Start/End: Complemental strand, 13382 - 13277
Alignment:
Q  332 gacatttcttcatctgttactaaatgaagcttcttcacagcaacaaccaaccctgtaggcaactctgccttgtaaacatttccttgacttccaactccaa 431  Q
    ||||||||||||| |  || ||||||||| ||||||||||| |||||    |||| |||||||||||| |||||||||||||| || | |||||| ||||    
T  13382 gacatttcttcatgttctaataaatgaagtttcttcacagctacaacttgacctgaaggcaactctgctttgtaaacatttccatgtcctccaaccccaa 13283  T
Q  432 tgagat 437  Q
    ||||||    
T  13282 tgagat 13277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 43 - 154
Target Start/End: Complemental strand, 13665 - 13554
Alignment:
Q  43 attcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgacacctttaacaacattcaccctcttt 142  Q
    ||||||||| |||||||| ||||||| ||||||||| || |||||||||||||  ||| | || ||||| || | | ||||||  | ||||||||||||     
T  13665 attcttgctggatatatctcgatgaacaataggaggggaacaatcatgatgcagatagaataaggcattagctatatctttaatgatattcaccctctta 13566  T
Q  143 tcccaatcaaat 154  Q
    | ||||||||||    
T  13565 ttccaatcaaat 13554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 7365 - 7283
Alignment:
Q  43 attcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgacacctttaa 125  Q
    ||||||||| |||||||||||||||| ||| | |||||||||||  |||||||  ||| | |||||||| || ||||||||||    
T  7365 attcttgctggatatatcacgatgaacaattgaaggtgagcaattgtgatgcatatagcataaagcattagctacacctttaa 7283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 437
Target Start/End: Complemental strand, 14025 - 13920
Alignment:
Q  332 gacatttcttcatctgttactaaatgaagcttcttcacagcaacaaccaaccctgtaggcaactctgccttgtaaacatttccttgacttccaactccaa 431  Q
    ||||||||||||| |  || ||||||||| ||||||||||| |||||    |||| |||||||||||| |||||||||||||| || | |||||| ||||    
T  14025 gacatttcttcatgttctaataaatgaagtttcttcacagctacaacttgacctgaaggcaactctgctttgtaaacatttccatgtcctccaaccccaa 13926  T
Q  432 tgagat 437  Q
    ||||||    
T  13925 tgagat 13920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 43 - 154
Target Start/End: Complemental strand, 14308 - 14197
Alignment:
Q  43 attcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgacacctttaacaacattcaccctcttt 142  Q
    ||||||||| |||||||| ||||||| ||||||||| || |||||||||||||  ||| | || ||||| || | | ||||||  | ||||||||||||     
T  14308 attcttgctggatatatctcgatgaacaataggaggggaacaatcatgatgcagatagaataaggcattagctatatctttaatgatattcaccctctta 14209  T
Q  143 tcccaatcaaat 154  Q
    | ||||||||||    
T  14208 ttccaatcaaat 14197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 8009 - 7927
Alignment:
Q  43 attcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgacacctttaa 125  Q
    ||||||||| |||||||||||||||| ||| | |||||||||||  |||||||  ||| | |||||||| || ||||||||||    
T  8009 attcttgctggatatatcacgatgaacaattgaaggtgagcaattgtgatgcatatagcataaagcattagctacacctttaa 7927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 497
Target Start/End: Complemental strand, 37027258 - 37027196
Alignment:
Q  435 gatatttgtcatcaaaattctcagtagcttcaatgatattttcaaacatcattttcccatcat 497  Q
    |||||||||||||||||| ||| || |||||||||||||||||| | | |||||| |||||||    
T  37027258 gatatttgtcatcaaaatcctctgtggcttcaatgatattttcataaaccatttttccatcat 37027196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 17027428 - 17027372
Alignment:
Q  387 taggcaactctgccttgtaaacatttccttgacttccaactccaatgagatatttgt 443  Q
    ||||||||||||| | ||||||| |||| |||| |||||| ||||||||||| ||||    
T  17027428 taggcaactctgcttggtaaacacttccatgacctccaaccccaatgagatacttgt 17027372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 17028717 - 17028665
Alignment:
Q  43 attcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgca 95  Q
    |||||| || |||||||||||||||| ||| | |||||||||||||| |||||    
T  17028717 attcttactggatatatcacgatgaacaattgaaggtgagcaatcatcatgca 17028665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 17557920 - 17557864
Alignment:
Q  387 taggcaactctgccttgtaaacatttccttgacttccaactccaatgagatatttgt 443  Q
    ||||||||||||| | ||||||| |||| |||| |||||| ||||||||||| ||||    
T  17557920 taggcaactctgcttggtaaacacttccatgacctccaaccccaatgagatacttgt 17557864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 17559153 - 17559101
Alignment:
Q  43 attcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgca 95  Q
    |||||| || |||||||||||||||| ||| | |||||||||||||| |||||    
T  17559153 attcttactggatatatcacgatgaacaattgaaggtgagcaatcatcatgca 17559101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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