View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12085_low_5 (Length: 511)
Name: NF12085_low_5
Description: NF12085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12085_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 11667710 - 11668095
Alignment:
| Q |
18 |
ctcttggcaagttattcaaactcatcaaacaaataactatttgaatctaaagagctagataatactttcaataatggctcaaataatggttcaagttttg |
117 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11667710 |
ctcttggcaagttattcaaactcatcaaaaaaataactatttcaatctaaagagctagataatactttcaataatggctcaaataatggttcaagttttg |
11667809 |
T |
|
| Q |
118 |
gtgtcaatcttgcttgtactagtggcagtggaagcagctactcctcctggaattgctaaagatcatgaatatggccatgcaagctgcaagataaagaaat |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
11667810 |
gtgtcaatcttgcttgtgctagtggcagtggaagcagctactcctcctggaattgctaaagatcatgagtatggccatgcaagctgtaagataaagaaat |
11667909 |
T |
|
| Q |
218 |
acaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattgtactgtggagtgtgcctcttgcaaacctatttgtgttgggggcac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11667910 |
acaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattgtactgtggagtgtgcctcttgcaaacctatttgtgttgggggcac |
11668009 |
T |
|
| Q |
318 |
aaataatccttcacatgattatcctaccccttctacacctactccttcacatgattaccctaccccttctactccccataacccac |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11668010 |
aaataatccttcacatgattatcctaccccttctacacctactccttcacatgattaccctaccccttctactccccataacccac |
11668095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 11653947 - 11654330
Alignment:
| Q |
18 |
ctcttggcaagttattcaaactcatcaaa-caaataactatttgaatctaaagagctagataatactttcaataatggctcaaataatggttcaagtttt |
116 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11653947 |
ctcttggcaagttattcaaactcattaaaacaaataactatttgaatctaaagagctagataatactttcaat---ggctcaaataatggttcaagtttt |
11654043 |
T |
|
| Q |
117 |
ggtgtcaatcttgcttgtactagtggcagtggaagcagctactcctcctggaattgctaaagatcatgaatatggccatgcaagctgcaagataaagaaa |
216 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11654044 |
ggtgtcaatcttgcttgtgctagtggcagtggaagcagctactcctcctggaattgctaaagatcatgaatatggccatgcaagctgcaagataaagaaa |
11654143 |
T |
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| Q |
217 |
tacaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattgtactgtggagtgtgcctcttgcaaacctatttgtgttgggggca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11654144 |
tacaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattgtactgtggagtgtgcctcttgcaaacctatttgtgttgggggca |
11654243 |
T |
|
| Q |
317 |
caaataatccttcacatgattatcctaccccttctacacctactccttcacatgattaccctaccccttctactccccataacccac |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11654244 |
caaataatccttcacatgattatcctaccccttctacacctactccttcacatgattaccctaccccttctactccccataacccac |
11654330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 90 - 305
Target Start/End: Original strand, 11663397 - 11663612
Alignment:
| Q |
90 |
aatggctcaaataatggttcaagttttggtgtcaatcttgcttgtactagtggcagtggaagcagctactcctcctggaattgctaaagatcatgaatat |
189 |
Q |
| |
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||||||| ||||| | |||||| ||||||||||||| |||||||| ||| |||||||||||||||||| ||||||||||| |||||||| || || || |
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| T |
11663397 |
aatggctaaaatattagttcaaattttggtgtcaattttgcttgtgctaatggcagtggaagcagctagtcctcctggaaatgctaaaggtcgtgggaat |
11663496 |
T |
|
| Q |
190 |
ggccatgcaagctgcaagataaagaaatacaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattgtactgtggagtgtgcct |
289 |
Q |
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|| |||||| ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| ||| ||| |||||||||||||||||||||||| |
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| T |
11663497 |
ggttatgcaacctgcaagataaagaagtacaaacattgctataattcggttcatgtatgtcctaagtcttgtccttatgattgtactgtggagtgtgcct |
11663596 |
T |
|
| Q |
290 |
cttgcaaacctatttg |
305 |
Q |
| |
|
|||||||||||||||| |
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| T |
11663597 |
cttgcaaacctatttg |
11663612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 90 - 305
Target Start/End: Complemental strand, 7345073 - 7344855
Alignment:
| Q |
90 |
aatggctcaaataatggttcaagttttggtgtcaatcttgct---tgtactagtggcagtggaagcagctactcctcctggaattgctaaagatcatgaa |
186 |
Q |
| |
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||||||| || ||||||||||| |||||||||||| | || ||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7345073 |
aatggctaaattaatggttcaaactttggtgtcaataattctccttgtgctagtggcagtggaagcagctactcctcctggaattgctaaagatcgtgag |
7344974 |
T |
|
| Q |
187 |
tatggccatgcaagctgcaagataaagaaatacaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattgtactgtggagtgtg |
286 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||| ||||||||| ||| ||||||| ||| ||| ||||||| ||||||||||||| |
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| T |
7344973 |
catggttatgcaagctgcaagataaagaagtacaaacattgctataatatggttcatgcatgtcctaagtcttgtccttatgattgcactgtggagtgtg |
7344874 |
T |
|
| Q |
287 |
cctcttgcaaacctatttg |
305 |
Q |
| |
|
| ||||||||||| ||||| |
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| T |
7344873 |
cttcttgcaaaccaatttg |
7344855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 448 - 511
Target Start/End: Original strand, 11654384 - 11654447
Alignment:
| Q |
448 |
cctaatagctcttctccaccacataaccaacataattcatcttctacaccatcttcatcgtctt |
511 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11654384 |
cctaatagctcttctccaccacataaccaacataattcatcttctacaccatcttcatcatctt |
11654447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 448 - 511
Target Start/End: Original strand, 11668149 - 11668212
Alignment:
| Q |
448 |
cctaatagctcttctccaccacataaccaacataattcatcttctacaccatcttcatcgtctt |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
11668149 |
cctaatagctcttctccaccacataaccaacataattcatcttctacaccatcttcatcatctt |
11668212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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