View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12085_low_6 (Length: 510)
Name: NF12085_low_6
Description: NF12085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12085_low_6 |
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| [»] scaffold0562 (1 HSPs) |
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Alignment Details
Target: scaffold0562 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: scaffold0562
Description:
Target: scaffold0562; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 66 - 490
Target Start/End: Complemental strand, 9099 - 8673
Alignment:
| Q |
66 |
gagcattttaattttattgggaagcaaatatcaaagacat--gaaatatattatcggtagcaatacactccttaaatgttgtcacttattaattagtact |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9099 |
gagcattttaattttattgggaagcaaatatcaaagacatatgaaatatattatcggtagcaatacactccttaaatgttgtcacttattaattagtact |
9000 |
T |
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| Q |
164 |
agcataggaattgtgacaaatcaagactaaatnnnnnnntatcactacagcttggacctattttcaacttttagaaccaaggtgtcaaagactttaagaa |
263 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8999 |
agcataggaattgtgacaaatcaagactaaataaaaaaatatcactacagcttggacctattttcaacttttagaaccaaggtgtcaaagactttgagaa |
8900 |
T |
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| Q |
264 |
aaaatcttgttcttggtatagataggttggattccaagattgtgccaatggtactgattagattcttcttcacttctgaattaatgccacccattgaaac |
363 |
Q |
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| T |
8899 |
aaaatcttgttcttggtatagataggttggattccaagattgtgccaatggtactgattagattcttcttcacttctgaattaatgccacccattgaaac |
8800 |
T |
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| Q |
364 |
tagttcaccatatgcagctggttctttgttactttcaaacgatattggaactgaccccttcaatataaccatcacaaactgcaaaattacattcacaaat |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8799 |
tagttcaccatatgcagctggttctttgttactttcaaacgatattggaactgaccccttcaatataaccatcacaaactgcaaaattacattcacaaat |
8700 |
T |
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| Q |
464 |
cttgaaattagaacacatcaaacaaaa |
490 |
Q |
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| T |
8699 |
cttgaaattagaacacatcaaacaaaa |
8673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 66 - 490
Target Start/End: Complemental strand, 3878263 - 3877837
Alignment:
| Q |
66 |
gagcattttaattttattgggaagcaaatatcaaagacat--gaaatatattatcggtagcaatacactccttaaatgttgtcacttattaattagtact |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3878263 |
gagcattttaattttattgggaagcaaatatcaaagacatatgaaatatattatcggtagcaatacactccttaaatgttgtcacttattaattagtact |
3878164 |
T |
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| Q |
164 |
agcataggaattgtgacaaatcaagactaaatnnnnnnntatcactacagcttggacctattttcaacttttagaaccaaggtgtcaaagactttaagaa |
263 |
Q |
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| T |
3878163 |
agcataggaattgtgacaaatcaagactaaataaaaaaatatcactacagcttggacctattttcaacttttagaaccaaggtgtcaaagactttgagaa |
3878064 |
T |
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| Q |
264 |
aaaatcttgttcttggtatagataggttggattccaagattgtgccaatggtactgattagattcttcttcacttctgaattaatgccacccattgaaac |
363 |
Q |
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| T |
3878063 |
aaaatcttgttcttggtatagataggttggattccaagattgtgccaatggtactgattagattcttcttcacttctgaattaatgccacccattgaaac |
3877964 |
T |
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| Q |
364 |
tagttcaccatatgcagctggttctttgttactttcaaacgatattggaactgaccccttcaatataaccatcacaaactgcaaaattacattcacaaat |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3877963 |
tagttcaccatatgcagctggttctttgttactttcaaacgatattggaactgaccccttcaatataaccatcacaaactgcaaaattacattcacaaat |
3877864 |
T |
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| Q |
464 |
cttgaaattagaacacatcaaacaaaa |
490 |
Q |
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| T |
3877863 |
cttgaaattagaacacatcaaacaaaa |
3877837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 248 - 450
Target Start/End: Original strand, 25918066 - 25918268
Alignment:
| Q |
248 |
tcaaagactttaagaaaaaatcttgttcttggtatagataggttggattccaagattgtgccaatggtactgattagattcttcttcacttctgaattaa |
347 |
Q |
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|||||||||||||| ||||| | ||||||||| ||||| || ||||| | ||| || || ||||||||| || |||||||||||||||||| || | |
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| T |
25918066 |
tcaaagactttaaggaaaaaacgtgttcttgggatagaaagcttggactgcaatatagtaccaatggtagcaataagattcttcttcacttctttgttta |
25918165 |
T |
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| Q |
348 |
tgccacccattgaaactagttcaccatatgcagctggttctttgttactttcaaacgatattggaactgaccccttcaatataaccatcacaaactgcaa |
447 |
Q |
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| ||||||||||| | || |||| |||| ||||||||||||||||||| |||||| |||||||| || || ||||||| ||||||||||||||||| |
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| T |
25918166 |
taccacccattgatattatttcagcataagcagctggttctttgttaccttcaaatgatattggcacagatgatttcaataggaccatcacaaactgcaa |
25918265 |
T |
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| Q |
448 |
aat |
450 |
Q |
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||| |
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| T |
25918266 |
aat |
25918268 |
T |
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