View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12085_low_8 (Length: 404)
Name: NF12085_low_8
Description: NF12085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12085_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 35682466 - 35682095
Alignment:
| Q |
18 |
catataagatataaactatgaaatataagctcaaaaatgtgtcttgccaaatagattcataaccaattttacaaatgatctgttttggaaaatgcttagc |
117 |
Q |
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| T |
35682466 |
catataagatataaactatgaaatataagctcaaaaatgtgtcttgccaaatagattcataaccaattttacaaatgatctgttttggaaaatgcttagc |
35682367 |
T |
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| Q |
118 |
agtttcgaaaatagtgtagttaatttttgttacaattcaattnnnnnnnttattattgataaagcaaattaattacttttgaattatgctacgatacaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35682366 |
agtttcgaaaatagtgtagttaatttttgttacaattcaattaaaaaaattattattgataaagcaaattaattacttttgaattatgctacgatacaaa |
35682267 |
T |
|
| Q |
218 |
tcaaatgtgttgcattgcaggtgaagaaagctatagtagaagggaagcaagtagtgtttacagggcactcttcaggggctgttttggccattctagcaac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35682266 |
tcaaatgtgttgcattgcaggtgaagaaagctatagcagaagggaagcaagtagtgtttacagggcactcttcaggggctgttttggccattctagcaac |
35682167 |
T |
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| Q |
318 |
attttgggcattggaagagtatctttacccaaccaaaatccaaattcagcacaagtcacctatgtgtgtcac |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35682166 |
attttgggcattggaagagtatctttacccaaccaaaatccaaattcagcacaagtcacctatgtgtgtcac |
35682095 |
T |
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